Glyma08g05570 - SoyBase

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Report for Sequence Feature Glyma08g05570

Feature Type:	gene_model
Chromosome:	Gm08
Start:	3975603
stop:	3987041
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g05570

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G18070	AT	Annotation by Michelle Graham. TAIR10: Translation elongation factor EF1A/initiation factor IF2gamma family protein \| chr1:6214236-6218211 REVERSE LENGTH=532	SoyBase	E_val: 0	ISS
GO:0006415	GO-bp	Annotation by Michelle Graham. GO Biological Process: translational termination	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003747	GO-mf	Annotation by Michelle Graham. GO Molecular Function: translation release factor activity	SoyBase	N/A	ISS
GO:0003924	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTPase activity	SoyBase	N/A	ISS
GO:0005525	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP binding	SoyBase	N/A	ISS
GO:0008135	GO-mf	Annotation by Michelle Graham. GO Molecular Function: translation factor activity, nucleic acid binding	SoyBase	N/A	ISS
KOG0459	KOG	Polypeptide release factor 3	JGI		ISS
PTHR23115	Panther	TRANSLATION FACTOR	JGI		ISS
PTHR23115:SF36	Panther	EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR GTP-BINDING SUBUNIT (ERF2) (TRANSLATION RELEASE FACTOR 3) (ERF3) (ERF-3)	JGI		ISS
PF00009	PFAM	Elongation factor Tu GTP binding domain	JGI		ISS
PF03143	PFAM	Elongation factor Tu C-terminal domain	JGI		ISS
PF03144	PFAM	Elongation factor Tu domain 2	JGI		ISS
UniRef100_G7LD89	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Eukaryotic peptide chain release factor GTP-binding subunit n=1 Tax=Medicago truncatula RepID=G7LD89_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KQH1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KQH1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g05570

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g05570

Paralog	Evidence	Comments
Glyma05g34120	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g05570 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g051200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g05570

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g05570

Limit To All Plant Sequences

>Glyma08g05570.2   sequence type=transcript   gene model=Glyma08g05570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGTATTTATACTTTAAAGAAATAGGTCGAACCCAACCCAACCCAATAACAGAAGACAGTGGCAGACAGATAAATACTAAAGAGTGGCTTACTAGTCCCAAACCTCACACGACTCCTTTGTTGCGTTGTATTGCCTCTCTCGCCGAAACCCTCGTTTCCAACTTCTACAGAATCCATTTCTTCGCCATGGATATTGAGGAGGACATCCGTTCTTTGCAGCTCGATTCGGCAGAAGACAATAATGGGGTGGTAAATCCAGAGGATGGAAAGCCAGAAGAAGTTGAGAAATATGATAAGATGGATGAAGATCCAAAGCAGGAGGTTGAGGCTGAGCCAAAGGCTGTTGAGGCTGAGCCAAAAGTGAAAGATAAGGAGATTCCTTCTGTTCAAGATGAAGAAGATGTGCCTGAGATGACAAAAAGACACTTGAATGTTGTGTTTATTGGTCATGTTGATGCTGGTAAGTCTACAACTGGAGGCCAGATACTTTTCCTTAGTGGTCAAGTTGATGAACGGACTATCCAAAAATACGAGAAAGAGGCTAAGGACAAAAGTCGAGAAAGCTGGTATATGGCTTATATAATGGACACAAATGAGGAAGAGAGGGTAAAGGGAAAAACAGTTGAAGTTGGAAGAGCACATTTTGAGACTGAAACTACGAGGTTTACTATTTTGGATGCACCTGGTCACAAAAGTTATGTTCCCAACATGATTAGTGGTGCATCTCAAGCTGATATTGGGGTGTTGGTTATTTCTGCTCGGAAGGGAGAGTTTGAAACTGGATACGAGAGAGGTGGACAAACTCGTGAACATGTCCAGCTTGCAAAAACGCTGGGTGTGTCTAAGCTTCTTGTTGTTGTCAATAAAATGGATGAGCCTACAGTGCAATGGTCAAAAGAAAGGTATGATGAAATTGAGTCAAAGATGGTTCCATTTCTAAAGCAATCTGGATACAACGTAAAAAAAGATGTCTTGTTTTTACCAATTTCTGGTCTAATGGGTGCAAACATGAAAACAAGAGTGGATAAAAGTGTTTGTCCATGGTGGAACGGGCCTTGCTTATTTGAGGCACTTGACGCTATTGAAGTTCCACTGCGAGATCCCAAAGGTCCTTTCAGGATGCCTATTATTGACAAATTCAAAGACATGGGAACTGTTGTTATGGGCAAAGTTGAATCTGGCAGTGTTCGTGAGGGAGATTCCTTGTTGGTCATGCCAAATAAGGATCAAGTGAAAGTTGTTGCCATCTTTATTGATGAAGATCGTGTTAAACGTGCTGGACCTGGTGAAAATTTACGGATTAGATTATCTGGTGTTGAAGATGAAGACATTTTATCTGGGTTTGTTCTATCTAGTGTTGCTAATCCAATACCAGCAGTTACTGAGTTTGTTGCTCAGTTGGTGATCCTTGAACTGCTAGACAATGCTATTTTTACTGCTGGGTACAAGGCTGTTCTGCACATCCACTCTGTGGTTGAGGAATGTGAGATTGTTGAACTCTTGCAGCAAATCGATACAAAGACAAAGAAGCCTATGAAAAAGAAAGTTCTGTTTGTGAAGAATGGTGCTGTTGTAATGTGCCGTGTTCAGGTGCATTATTTTGCATTGTGAATCTAGAAGCTAATTTTTCTTTCTTTTTTATCTTCTATATTGTATTGCTGTACATTATTAAAAAACATGTTTGGAGTTGTCATCATGTGACCAGGAGGTCATAGGTTTGAGTGTTGGAATCAGCCTCTTACAAGGTGAGGCTGTGTTCTAAATTCTAATGATCTACATGGTGGTTGACCCTGTCCTGCACATGGCAGGAGCTTTATGGTGCTGGACTGCCCTTATTGTGTTGCTGTATATGGGTTTCCTAGGGCTATGAAATG

Coding sequences of Glyma08g05570

Limit To All Plant Sequences

>Glyma08g05570.1   sequence type=CDS   gene model=Glyma08g05570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATATTGAGGAGGACATCCGTTCTTTGCAGCTCGATTCGGCAGAAGACAATAATGGGGTGGTAAATCCAGAGGATGGAAAGCCAGAAGAAGTTGAGAAATATGATAAGATGGATGAAGATCCAAAGCAGGAGGTTGAGGCTGAGCCAAAGGCTGTTGAGGCTGAGCCAAAAGTGAAAGATAAGGAGATTCCTTCTGTTCAAGATGAAGAAGATGTGCCTGAGATGACAAAAAGACACTTGAATGTTGTGTTTATTGGTCATGTTGATGCTGGTAAGTCTACAACTGGAGGCCAGATACTTTTCCTTAGTGGTCAAGTTGATGAACGGACTATCCAAAAATACGAGAAAGAGGCTAAGGACAAAAGTCGAGAAAGCTGGTATATGGCTTATATAATGGACACAAATGAGGAAGAGAGGGTAAAGGGAAAAACAGTTGAAGTTGGAAGAGCACATTTTGAGACTGAAACTACGAGGTTTACTATTTTGGATGCACCTGGTCACAAAAGTTATGTTCCCAACATGATTAGTGGTGCATCTCAAGCTGATATTGGGGTGTTGGTTATTTCTGCTCGGAAGGGAGAGTTTGAAACTGGATACGAGAGAGGTGGACAAACTCGTGAACATGTCCAGCTTGCAAAAACGCTGGGTGTGTCTAAGCTTCTTGTTGTTGTCAATAAAATGGATGAGCCTACAGTGCAATGGTCAAAAGAAAGGTATGATGAAATTGAGTCAAAGATGGTTCCATTTCTAAAGCAATCTGGATACAACGTAAAAAAAGATGTCTTGTTTTTACCAATTTCTGGTCTAATGGGTGCAAACATGAAAACAAGAGTGGATAAAAGTGTTTGTCCATGGTGGAACGGGCCTTGCTTATTTGAGGCACTTGACGCTATTGAAGTTCCACTGCGAGATCCCAAAGGTCCTTTCAGGATGCCTATTATTGACAAATTCAAAGACATGGGAACTGTTGTTATGGGCAAAGTTGAATCTGGCAGTGTTCGTGAGGGAGATTCCTTGTTGGTCATGCCAAATAAGGATCAAGTGAAAGTTGTTGCCATCTTTATTGATGAAGATCGTGTTAAACGTGCTGGACCTGGTGAAAATTTACGGATTAGATTATCTGGTGTTGAAGATGAAGACATTTTATCTGGGTTTGTTCTATCTAGTGTTGCTAATCCAATACCAGCAGTTACTGAGTTTGTTGCTCAGTTGGTGATCCTTGAACTGCTAGACAATGCTATTTTTACTGCTGGGTACAAGGCTGTTCTGCACATCCACTCTGTGGTTGAGGAATGTGAGATTGTTGAACTCTTGCAGCAAATCGATACAAAGACAAAGAAGCCTATGAAAAAGAAAGTTCTGTTTGTGAAGAATGGTGCTGTTGTAATGTGCCGTGTTCAGGTTAATAACTCTATTTGCATTGAGAAGTTCTCTGATTTTCCCCAACTTGGGAGGTTCACTCTTCGCACTGAAGGAAAAACTGTTGCTGTGGGAAAAGTCACTGGTCTGTGA

>Glyma08g05570.2   sequence type=CDS   gene model=Glyma08g05570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATATTGAGGAGGACATCCGTTCTTTGCAGCTCGATTCGGCAGAAGACAATAATGGGGTGGTAAATCCAGAGGATGGAAAGCCAGAAGAAGTTGAGAAATATGATAAGATGGATGAAGATCCAAAGCAGGAGGTTGAGGCTGAGCCAAAGGCTGTTGAGGCTGAGCCAAAAGTGAAAGATAAGGAGATTCCTTCTGTTCAAGATGAAGAAGATGTGCCTGAGATGACAAAAAGACACTTGAATGTTGTGTTTATTGGTCATGTTGATGCTGGTAAGTCTACAACTGGAGGCCAGATACTTTTCCTTAGTGGTCAAGTTGATGAACGGACTATCCAAAAATACGAGAAAGAGGCTAAGGACAAAAGTCGAGAAAGCTGGTATATGGCTTATATAATGGACACAAATGAGGAAGAGAGGGTAAAGGGAAAAACAGTTGAAGTTGGAAGAGCACATTTTGAGACTGAAACTACGAGGTTTACTATTTTGGATGCACCTGGTCACAAAAGTTATGTTCCCAACATGATTAGTGGTGCATCTCAAGCTGATATTGGGGTGTTGGTTATTTCTGCTCGGAAGGGAGAGTTTGAAACTGGATACGAGAGAGGTGGACAAACTCGTGAACATGTCCAGCTTGCAAAAACGCTGGGTGTGTCTAAGCTTCTTGTTGTTGTCAATAAAATGGATGAGCCTACAGTGCAATGGTCAAAAGAAAGGTATGATGAAATTGAGTCAAAGATGGTTCCATTTCTAAAGCAATCTGGATACAACGTAAAAAAAGATGTCTTGTTTTTACCAATTTCTGGTCTAATGGGTGCAAACATGAAAACAAGAGTGGATAAAAGTGTTTGTCCATGGTGGAACGGGCCTTGCTTATTTGAGGCACTTGACGCTATTGAAGTTCCACTGCGAGATCCCAAAGGTCCTTTCAGGATGCCTATTATTGACAAATTCAAAGACATGGGAACTGTTGTTATGGGCAAAGTTGAATCTGGCAGTGTTCGTGAGGGAGATTCCTTGTTGGTCATGCCAAATAAGGATCAAGTGAAAGTTGTTGCCATCTTTATTGATGAAGATCGTGTTAAACGTGCTGGACCTGGTGAAAATTTACGGATTAGATTATCTGGTGTTGAAGATGAAGACATTTTATCTGGGTTTGTTCTATCTAGTGTTGCTAATCCAATACCAGCAGTTACTGAGTTTGTTGCTCAGTTGGTGATCCTTGAACTGCTAGACAATGCTATTTTTACTGCTGGGTACAAGGCTGTTCTGCACATCCACTCTGTGGTTGAGGAATGTGAGATTGTTGAACTCTTGCAGCAAATCGATACAAAGACAAAGAAGCCTATGAAAAAGAAAGTTCTGTTTGTGAAGAATGGTGCTGTTGTAATGTGCCGTGTTCAGGTGCATTATTTTGCATTGTGA

Predicted protein sequences of Glyma08g05570

Limit To All Plant Sequences

>Glyma08g05570.1   sequence type=predicted peptide   gene model=Glyma08g05570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDIEEDIRSLQLDSAEDNNGVVNPEDGKPEEVEKYDKMDEDPKQEVEAEPKAVEAEPKVKDKEIPSVQDEEDVPEMTKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVSKLLVVVNKMDEPTVQWSKERYDEIESKMVPFLKQSGYNVKKDVLFLPISGLMGANMKTRVDKSVCPWWNGPCLFEALDAIEVPLRDPKGPFRMPIIDKFKDMGTVVMGKVESGSVREGDSLLVMPNKDQVKVVAIFIDEDRVKRAGPGENLRIRLSGVEDEDILSGFVLSSVANPIPAVTEFVAQLVILELLDNAIFTAGYKAVLHIHSVVEECEIVELLQQIDTKTKKPMKKKVLFVKNGAVVMCRVQVNNSICIEKFSDFPQLGRFTLRTEGKTVAVGKVTGL*

>Glyma08g05570.2   sequence type=predicted peptide   gene model=Glyma08g05570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDIEEDIRSLQLDSAEDNNGVVNPEDGKPEEVEKYDKMDEDPKQEVEAEPKAVEAEPKVKDKEIPSVQDEEDVPEMTKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVSKLLVVVNKMDEPTVQWSKERYDEIESKMVPFLKQSGYNVKKDVLFLPISGLMGANMKTRVDKSVCPWWNGPCLFEALDAIEVPLRDPKGPFRMPIIDKFKDMGTVVMGKVESGSVREGDSLLVMPNKDQVKVVAIFIDEDRVKRAGPGENLRIRLSGVEDEDILSGFVLSSVANPIPAVTEFVAQLVILELLDNAIFTAGYKAVLHIHSVVEECEIVELLQQIDTKTKKPMKKKVLFVKNGAVVMCRVQVHYFAL*

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