Glyma08g05550 - SoyBase

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Report for Sequence Feature Glyma08g05550

Feature Type:	gene_model
Chromosome:	Gm08
Start:	3967674
stop:	3970310
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g05550

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G42550	AT	Annotation by Michelle Graham. TAIR10: plastid movement impaired1 \| chr1:15977131-15979734 FORWARD LENGTH=843	SoyBase	E_val: 0	ISS
GO:0006364	GO-bp	Annotation by Michelle Graham. GO Biological Process: rRNA processing	SoyBase	N/A	ISS
GO:0009902	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast relocation	SoyBase	N/A	ISS
GO:0010027	GO-bp	Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization	SoyBase	N/A	ISS
GO:0010207	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosystem II assembly	SoyBase	N/A	ISS
GO:0034660	GO-bp	Annotation by Michelle Graham. GO Biological Process: ncRNA metabolic process	SoyBase	N/A	ISS
GO:0035304	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation	SoyBase	N/A	ISS
GO:0042793	GO-bp	Annotation by Michelle Graham. GO Biological Process: transcription from plastid promoter	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_Q9C8E6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Plastid movement impaired1 n=3 Tax=Arabidopsis thaliana RepID=Q9C8E6_ARATH	SoyBase	E_val: 0	ISS
UniRef100_UPI0002338B4C	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338B4C related cluster n=1 Tax=unknown RepID=UPI0002338B4C	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g05550

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g05550

Paralog	Evidence	Comments
Glyma05g34140	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g05550 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g051000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g05550

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g05550

Limit To All Plant Sequences

>Glyma08g05550.2   sequence type=CDS   gene model=Glyma08g05550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGATGCCAAGAGCAACCCCAATGCACAACTCCTTGAAGAACTGGAAGCTTTGAGCGAATCCCTTTACAAACAACACACCTCCACTACCACAGCCAGAAGAACAACTTCCCTTGTGTTGCCACGAACTTCAGCTCCGCCTATCGAAGATGCCAAACATGATGATGGAAACAGCAACAAAACTCGGCGGCGCATGTCCATGTCCCCATGGCGATCAAGGCCAAAGCCTGATGATGATGCCACTGCCAAGGCAGAAACCAAAAAGCTTGATGACAACACATCAACAATTTCTTCAGGTGAAAGTAACAAGAAAGGGATTTGGAAGTGGAAGCCTATTCGGGCTTTGTCTCACATTGGAATGCAGAAACTAAGCTGCTTGTTTTCTGTTGAAGTGGTCATAGCTCAAGGCCTTCCTTCTTCCATGAATGGACTTAGACTATCCGTTTGTGTTAGAAAGAAGGAAACAAAGGATGGAGCGGTTAAGACAATGCCATCAAGGGTTGCACTAGGAGCTGCAGATTTTGAAGAGACCCTTTTCATCAGGTGTCATGTTTATCATACCTCCAACCAAGGCACTGCTGCAAAGCACATCAAGTTTGAGCCGCGCCTCTTTTGGATATACCTTTTTTCTGTTGATGCTAAGGAGCTTGATTTTGGAAGAAGCTCTGTGGACTTGACTGAGTTGATAAGAGAATCCATTGAGAAAAACCAACAAGGCATGCGGCTGAGGCAATGGGACACAAGCTTTGGCCTGTCTGGGAAGGCAAAAGGAGGAGAACTTGTTCTCAAACTGGGCTTCCAGATAATGGAGAAAGATGGAGGAGTTGATATATATAATAATAATAATAATAATCATAATAATCAAGTGGAGAATTCAAAGTCCAGCTTTGGCAAGCTTAGTAGCTTCTCTTCTTCTTTTGCTCGTAAACAATCCAAGACATCATTCAGCATGTCTAGTCCTAGAATGACAAGTAGAAATGATGCATGGACTCCTTCACAATCAGGAATAGGAGAGGATATTCAAGGAATGGATGATTTGAACCTTGATGATGACCCAAATCCGGTGCCGGCTCAGGATTCCTCTTCCTCTACACAGAAAGTTGATGAACCACGTAGTAAGGAACAGGTGGAGGATTTTGATCTTCCAGATTTCGAGGTTGTGGATAAAGGGGTTGAGGTTCAAGAGAAGGAAGAAGATGGAGGAGAGGAAGCTGAGGAACCTGTCCAACAAGAGGAATCAACTTCAAGTGAGGTTGTCAAGGAAGTAGTGCTTGATCATGTGCACCTTACTAGATTGTCTGAGCTTGATTCAATTGCTCAGCAGATAAAAGCTCTTGAGTCTATAATGGGAGAAGATGATAATAAGTTTACGAATATAGAAGAAGAGACAGAACCACAGAGGCTAGATGCAGATGAAGAAACTGTGACTAAGGAGTTTCTTCAGATGCTTGAGGATCAAGAAAACAGTGATTACTACTTGTTCAATCAACCTGAAATTCCACCTCTAAAGCTTGAAGGACACGATGATGCTTCTTCTGCTGAAGATGGAGAATCCAAAGTGTATCTTCCTGACCTTGGAAAGGGCTTGGGTTGTGTAATTCAAACAAAGGATGGAGGCTACTTGGCATCTATGAACCCTTTTGATATCGCTGTGGCTAGAAAAGATGCTCCAAAGCTAGCTATGCAGATATCAAGGCCTTTTGTGTTGGCAATGGCATCACACCAATCCTTGACAGGGTTCGAGTTGTTTCAGAAATTGGCTGACATTGGCTTTGATGAACTCAGCTCCAAGGTTTTGTCCTTAATGCCAATAGATGAAATGGTAGGCAAAACTGCAGAACAGGTTGCTTTCGAAGGCATTGCCAATGCCATCATACAAGGTAGGAACAAGGAAGGAGCAAGTTCCAGTGCTGCTAGAATAGTTTCTTACTTGAAAAGCATGGGAAGTGCCATGAGTTCAGGAAGAAGAGAGAGAATAACAACAGGACTTTGGAATGTTGAAGAGGAGCCACTCACAGCAGAAAAGCTTCTGGCGTTTGCCATGCAGAAGGTTGAATCCATGACAGTTGAAGCATTGAAAATTCAAGCTGACATGGCCGAGGAATTAGAAGCCCCATTTGATATTTCTGCAAAGAAAGGAGAGGCTGGGAAGGATCTTTTGGCTTCGGCTATTCCACTTGAGGAATGGATCAGAGACCAAAGCTATACTAAAACTGCTGGCGCAGGATGTTCTGATGGGGAACCTGAAAAAGTGACACTGGTATTGGTTGTCCAATTGAGGGATCCAATGAGACGCTATGAAGCAGTTGGAGGACCTGTGATGGTGCTGATTCATGTAACAAGTGCCGCTGAGACAAAGAGGAAAGAGAAAAGGTTCAAGGTAGCAAGCATGCATGTGGGGGGTTTCAAGTTGACAAGTGTCATAAAGAAGAATGCATTGGACAGTGGGAAGCAAAGACTCACTGCAATGCAATGGTTGGTTGCATATGGTTTGGGAAAGGCAGGGAACAAGAAAGGGAAGCAAACATTGGCAAAGGGACAACAGCAAGACCTGTTGTGGAGCATTTCATCACGAATAGTTGCTGACATGTGGCTCAAAACCATGAGAAATCCAGATATCAATCTTGGAAAGTAG

Predicted protein sequences of Glyma08g05550

Limit To All Plant Sequences

>Glyma08g05550.2   sequence type=predicted peptide   gene model=Glyma08g05550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADAKSNPNAQLLEELEALSESLYKQHTSTTTARRTTSLVLPRTSAPPIEDAKHDDGNSNKTRRRMSMSPWRSRPKPDDDATAKAETKKLDDNTSTISSGESNKKGIWKWKPIRALSHIGMQKLSCLFSVEVVIAQGLPSSMNGLRLSVCVRKKETKDGAVKTMPSRVALGAADFEETLFIRCHVYHTSNQGTAAKHIKFEPRLFWIYLFSVDAKELDFGRSSVDLTELIRESIEKNQQGMRLRQWDTSFGLSGKAKGGELVLKLGFQIMEKDGGVDIYNNNNNNHNNQVENSKSSFGKLSSFSSSFARKQSKTSFSMSSPRMTSRNDAWTPSQSGIGEDIQGMDDLNLDDDPNPVPAQDSSSSTQKVDEPRSKEQVEDFDLPDFEVVDKGVEVQEKEEDGGEEAEEPVQQEESTSSEVVKEVVLDHVHLTRLSELDSIAQQIKALESIMGEDDNKFTNIEEETEPQRLDADEETVTKEFLQMLEDQENSDYYLFNQPEIPPLKLEGHDDASSAEDGESKVYLPDLGKGLGCVIQTKDGGYLASMNPFDIAVARKDAPKLAMQISRPFVLAMASHQSLTGFELFQKLADIGFDELSSKVLSLMPIDEMVGKTAEQVAFEGIANAIIQGRNKEGASSSAARIVSYLKSMGSAMSSGRRERITTGLWNVEEEPLTAEKLLAFAMQKVESMTVEALKIQADMAEELEAPFDISAKKGEAGKDLLASAIPLEEWIRDQSYTKTAGAGCSDGEPEKVTLVLVVQLRDPMRRYEAVGGPVMVLIHVTSAAETKRKEKRFKVASMHVGGFKLTSVIKKNALDSGKQRLTAMQWLVAYGLGKAGNKKGKQTLAKGQQQDLLWSISSRIVADMWLKTMRNPDINLGK*

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