Glyma08g05540 - SoyBase

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Report for Sequence Feature Glyma08g05540

Feature Type:	gene_model
Chromosome:	Gm08
Start:	3959923
stop:	3964267
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g05540

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G73690	AT	Annotation by Michelle Graham. TAIR10: cyclin-dependent kinase D1;1 \| chr1:27715113-27717018 FORWARD LENGTH=398	SoyBase	E_val: 0	ISS
GO:0000278	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitotic cell cycle	SoyBase	N/A	ISS
GO:0000394	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation	SoyBase	N/A	ISS
GO:0006366	GO-bp	Annotation by Michelle Graham. GO Biological Process: transcription from RNA polymerase II promoter	SoyBase	N/A	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0010440	GO-bp	Annotation by Michelle Graham. GO Biological Process: stomatal lineage progression	SoyBase	N/A	ISS
GO:0030154	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell differentiation	SoyBase	N/A	ISS
GO:0042023	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication	SoyBase	N/A	ISS
GO:0045736	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of cyclin-dependent protein kinase activity	SoyBase	N/A	ISS
GO:0051726	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG0659	KOG	Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7	JGI		ISS
PTHR24056	Panther	CELL DIVISION PROTEIN KINASE	JGI		ISS
PTHR24056:SF93	Panther	SERINE/THREONINE-PROTEIN KINASE SSN	JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_I1KQG7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KQG7_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q947K6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CDK-activating kinase n=1 Tax=Medicago sativa subsp. x varia RepID=Q947K6_MEDSV	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g05540

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g05540

Paralog	Evidence	Comments
Glyma05g34150	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g05540 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g050900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g05540

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g05540

Limit To All Plant Sequences

>Glyma08g05540.4   sequence type=transcript   gene model=Glyma08g05540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CATTCGTCAACGGCTTATTCGCTTTATGACGCTCTCTCACGATGCTCCCTTATTCGCTTTTACTTTCAGGTTTCAGCCACAGCTGCTGTTTATATTCACTTCTTCAACCCTCATTTCTGGTTAAATCAGTACTCACTCTCTACCCGTTTCCTGATAATCCCTAATTTGATCCAAATGACTCACTTGTAATTTCTTATAAAAAAAAATTCAATTCTAATCACTTCAATCAACCCCAATATCTTGAACACGAATGTCAGACATGGATCCGTCCAAAAAAGTGGCCGATAGATATCTGAAGCGTGAAGTCCTTGGTGAAGGTACCTATGGAGTTGTGTACAAAGCTATTGATACCCATACAGGGCAGACGGTTGCAATTAAGAAAATTCGGCTTGGCAAACAGAAAGAAGGGGTAAATTTTACAGCTCTTAGAGAAATTAAGCTGCTAAAAGAGCTCAAAGATCCAAACATTGTTGAATTGATTGATGCATTCCCACATAAAGGGAATTTGCATCTTGTTTTTGAATTCATGGAGACGGACCTAGAAGCCGTCATACGAGACCGAAATATTTTTCTTTCACCATCTGATACAAAATCCTACCTGCAAATGACACTAAAAGGTCTTGCTTATTGCCACAAGAAATGGGTTTTGCATAGGGACATGAAGCCAAATAATTTATTGATAGGATCTAATGGACAGCTGAAACTTGCAGATTTTGGTTTAGCACGGATGTTTGGAAGCCCAGATAGAAGGTTCACTCATCAGGTTTTTGCTCGGTGGTATAGAGCTCCTGAGCTATTATTTGGTGCCAAGCAATATGGTCCTGGAGTTGATGTTTGGGCTGCAGGCTGTATATTTGCTGAACTTCTTCTTCGTCGACCTTTTTTGCAGGGTACAAGTGACATTGATCAATTAGGAAAGATTTTTTCAGCATTTGGCACTCCAACGGCTTCTCAGTGGCCTGATATGGTATACCTGCCTGATTATGTCGAATACCAATATGTTCCTGCCCCCCCTCTGCGTTCTTTATTTCCGATGGTAACTGATGATGCTTTAGATCTGTTGTCAAAGATGTTTACATATGATCCAAAAGCTAGAATTTCAGTGCAGCAGGCACTAGAGCATAGGTACTTTTCTTCTGCTCCTCTGCCTTCGGATCCAGACAAGCTCCCTAGACCTGCTCCCAAGAGGGAATCTAGGACTTCTGATTTCAATTTACAGGAGGGTCCTACTGTATTATCACCTCCAAGGAAGTCTAGGAGAGTGATGCCAGGACGTGATGGGTTTGAAGGAAGTTCTCTGCAAGCAGATAAGGTTGATGCCAGTTTTGGTGATTTCAACTGATGATAATACAGTGCTGACAGATCATATTTGAAACGAAAATTAGATCTAGAATTTCAACAGCCAGAATGAATATTCTGTGGCCGACACATTCATACAAACTTATGGAGGGCAAAATACATTTGAAGAAAAGTGGTGAATCCTCAAAGGCTTGCTAGTATGTCATTCTCTATCCCTGTTTCTCAGTGTGAAGCTACAACAAATATGTAACTGAAGAAGTCACTGAAGATTAGTTGCAGTTCAGATACCTTAAAGTAACTTCTATAGAAAAAAAAATTAAAAACTTATATCACACACTCACTCTGGTCCCCCCTTGTACATTTTTGTTCTGTACGTTTTCAGAGAACTAGTATACTCGAGTTCATGGAAAACATGGAGTGTGAGGACATTTTCTCGAGCCGTTGCTGTATATGGCGCTTGAAAAAAAAAACTTTAGGGGAACTTAATTTGAATACAAATTTGTTATTGAACATAAGAAATTTTTTTATATGCATATGGACTTGTAGAGTGTGTATTGTATGTACTTTATTGGGAACTTCAGACATGTGAATTCCAATTTTAATTGGTTGAATGATTTTTTTCTTTCGGTGTTTTTAT

Coding sequences of Glyma08g05540

Limit To All Plant Sequences

>Glyma08g05540.3   sequence type=CDS   gene model=Glyma08g05540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGACATGGATCCGTCCAAAAAAGTGGCCGATAGATATCTGAAGCGTGAAGTCCTTGGTGAAGGTACCTATGGAGTTGTGTACAAAGCTATTGATACCCATACAGGGCAGACGGTTGCAATTAAGAAAATTCGGCTTGGCAAACAGAAAGAAGGGGTAAATTTTACAGCTCTTAGAGAAATTAAGCTGCTAAAAGAGCTCAAAGATCCAAACATTGTTGAATTGATTGATGCATTCCCACATAAAGGGAATTTGCATCTTGTTTTTGAATTCATGGAGACGGACCTAGAAGCCGTCATACGAGACCGAAATATTTTTCTTTCACCATCTGATACAAAATCCTACCTGCAAATGACACTAAAAGGTCTTGCTTATTGCCACAAGAAATGGGTTTTGCATAGGGACATGAAGCCAAATAATTTATTGATAGGATCTAATGGACAGCTGAAACTTGCAGATTTTGGTTTAGCACGGATGTTTGGAAGCCCAGATAGAAGGTTCACTCATCAGGTTTTTGCTCGGTGGTATAGAGCTCCTGAGCTATTATTTGGTGCCAAGCAATATGGTCCTGGAGTTGATGTTTGGGCTGCAGGCTGTATATTTGCTGAACTTCTTCTTCGTCGACCTTTTTTGCAGGGTACAAGTGACATTGATCAATTAGGAAAGATTTTTTCAGCATTTGGCACTCCAACGGCTTCTCAGTGGCCTGATATGGTATACCTGCCTGATTATGTCGAATACCAATATGTTCCTGCCCCCCCTCTGCGTTCTTTATTTCCGATGGTAACTGATGATGCTTTAGATCTGTTGTCAAAGATGTTTACATATGATCCAAAAGCTAGAATTTCAGTGCAGCAGGCACTAGAGCATAGGTACTTTTCTTCTGCTCCTCTGCCTTCGGATCCAGACAAGCTCCCTAGACCTGCTCCCAAGAGGGAATCTAGGACTTCTGATTTCAATTTACAGGAGGGTCCTACTGTATTATCACCTCCAAGGAAGTCTAGGAGAGTGATGCCAGGACGTGATGGGTTTGAAGGAAGTTCTCTGCAAGCAGATAAGGTTGATGCCAGTTTTGGTGATTTCAACTGA

>Glyma08g05540.4   sequence type=CDS   gene model=Glyma08g05540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGACATGGATCCGTCCAAAAAAGTGGCCGATAGATATCTGAAGCGTGAAGTCCTTGGTGAAGGTACCTATGGAGTTGTGTACAAAGCTATTGATACCCATACAGGGCAGACGGTTGCAATTAAGAAAATTCGGCTTGGCAAACAGAAAGAAGGGGTAAATTTTACAGCTCTTAGAGAAATTAAGCTGCTAAAAGAGCTCAAAGATCCAAACATTGTTGAATTGATTGATGCATTCCCACATAAAGGGAATTTGCATCTTGTTTTTGAATTCATGGAGACGGACCTAGAAGCCGTCATACGAGACCGAAATATTTTTCTTTCACCATCTGATACAAAATCCTACCTGCAAATGACACTAAAAGGTCTTGCTTATTGCCACAAGAAATGGGTTTTGCATAGGGACATGAAGCCAAATAATTTATTGATAGGATCTAATGGACAGCTGAAACTTGCAGATTTTGGTTTAGCACGGATGTTTGGAAGCCCAGATAGAAGGTTCACTCATCAGGTTTTTGCTCGGTGGTATAGAGCTCCTGAGCTATTATTTGGTGCCAAGCAATATGGTCCTGGAGTTGATGTTTGGGCTGCAGGCTGTATATTTGCTGAACTTCTTCTTCGTCGACCTTTTTTGCAGGGTACAAGTGACATTGATCAATTAGGAAAGATTTTTTCAGCATTTGGCACTCCAACGGCTTCTCAGTGGCCTGATATGGTATACCTGCCTGATTATGTCGAATACCAATATGTTCCTGCCCCCCCTCTGCGTTCTTTATTTCCGATGGTAACTGATGATGCTTTAGATCTGTTGTCAAAGATGTTTACATATGATCCAAAAGCTAGAATTTCAGTGCAGCAGGCACTAGAGCATAGGTACTTTTCTTCTGCTCCTCTGCCTTCGGATCCAGACAAGCTCCCTAGACCTGCTCCCAAGAGGGAATCTAGGACTTCTGATTTCAATTTACAGGAGGGTCCTACTGTATTATCACCTCCAAGGAAGTCTAGGAGAGTGATGCCAGGACGTGATGGGTTTGAAGGAAGTTCTCTGCAAGCAGATAAGGTTGATGCCAGTTTTGGTGATTTCAACTGA

Predicted protein sequences of Glyma08g05540

Limit To All Plant Sequences

>Glyma08g05540.3   sequence type=predicted peptide   gene model=Glyma08g05540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSDMDPSKKVADRYLKREVLGEGTYGVVYKAIDTHTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDPNIVELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPSDTKSYLQMTLKGLAYCHKKWVLHRDMKPNNLLIGSNGQLKLADFGLARMFGSPDRRFTHQVFARWYRAPELLFGAKQYGPGVDVWAAGCIFAELLLRRPFLQGTSDIDQLGKIFSAFGTPTASQWPDMVYLPDYVEYQYVPAPPLRSLFPMVTDDALDLLSKMFTYDPKARISVQQALEHRYFSSAPLPSDPDKLPRPAPKRESRTSDFNLQEGPTVLSPPRKSRRVMPGRDGFEGSSLQADKVDASFGDFN*

>Glyma08g05540.4   sequence type=predicted peptide   gene model=Glyma08g05540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSDMDPSKKVADRYLKREVLGEGTYGVVYKAIDTHTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDPNIVELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPSDTKSYLQMTLKGLAYCHKKWVLHRDMKPNNLLIGSNGQLKLADFGLARMFGSPDRRFTHQVFARWYRAPELLFGAKQYGPGVDVWAAGCIFAELLLRRPFLQGTSDIDQLGKIFSAFGTPTASQWPDMVYLPDYVEYQYVPAPPLRSLFPMVTDDALDLLSKMFTYDPKARISVQQALEHRYFSSAPLPSDPDKLPRPAPKRESRTSDFNLQEGPTVLSPPRKSRRVMPGRDGFEGSSLQADKVDASFGDFN*

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