Glyma08g05490 - SoyBase

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Report for Sequence Feature Glyma08g05490

Feature Type:	gene_model
Chromosome:	Gm08
Start:	3937332
stop:	3939992
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g05490

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G18180	AT	Annotation by Michelle Graham. TAIR10: Glycosyltransferase family 61 protein \| chr3:6230270-6231878 FORWARD LENGTH=470	SoyBase	E_val: 5.00E-157	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
KOG4698	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR20961	Panther	GLYCOSYLTRANSFERASE	JGI		ISS
PF04577	PFAM	Protein of unknown function (DUF563)	JGI		ISS
UniRef100_G7LCG2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glycosyltransferase, putative n=1 Tax=Medicago truncatula RepID=G7LCG2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KQG2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KQG2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g05490

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g05490

Paralog	Evidence	Comments
Glyma05g34170	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g05490 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g050300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g05490

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g05490

Limit To All Plant Sequences

>Glyma08g05490.1   sequence type=CDS   gene model=Glyma08g05490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTTACGACACGGTACTAGCCAAAAGCTTTAGTCGTTATGATCAGAAAAGGTTGGGATATGGAGCATTTGTGAGCTGCTTGTTCATAATTTTGAGTCTTTGCACTGTGTTTAAGCCTTACTTGGGTCCTGTGCATGTTTTGAGCCTGAAACTCTTCATCGATGTTGACACTAAAATGCTGATCACCAGCAGCTCTTTACAAATAGCCAAAGTGAAAGGAAAAGAAACAAAGAAAGAGGAGCTACTATGTACTTCAGAAGAAAGAACAGAATTTTGCCAAGCAAGGGGAGACATCAGAGTCCATGGAAAATCCTCCACCGTATCCATTGTTTCATCTAAGACAACTATGTTGGAAAAAACCATGTCACGGAGTTTAAAGCCTTATGCACGGAGGGGCGATATAGATGCAATGAATCGTGTAAGAGAATGGTCAGTGAAGGCAGTAAATGCTAGCCAGAAAGCTCCCCAATGCACCCAAAGTCACAACATTACGGCTGTATTATTTTCTACTGGAGGGTATTCTGGTAACCACTTCCATGAATTCACTGACATTGTTATTCCACTGTTTTTGACTGCTAGACAATTCAATGGAGAAGTACAATTTATCATAACTGATAAACGTCCTTGGTGGATTTCAAAGCACAAACCACTTCTTAAGAAGCTATCCAACTATGAGACTATGGACATTGATGGAGATGATCAAGTTCATTGCTTCCCAAGTGTGACTGTGGGTCTCAAACGGTATCAGAAAGAGCTAAGCATTGACCCTCAAAAGTATTCCTATTCTATGAAAGACTTCAGGGATCTTTTGAGAAGTTCCTATGCATTGAAGAGAGTTGAAGCAATGAAAATCAGAGATGGTCTACGTGGGAAGCCTAGGCTCATGATTCTTTCAAGAAAAAGATCAAGATCCTTCACTAATACAGATGAAATAGCAAAAATGGCTGCGAGTTTGGGCTTTGATGTCATTGTTAAGGAAGCAGGGTGGAGCATGTGGGGCTTTGCAAATGTTGTGAATTCTTGTGATGTGTTATTGGGAGTTCATGGTGCTGGTCTCACTAACATACTTTTCCTTCCGGAAAATGCAGTTTTCATCCAAGTTGTGCCTTACGGAGGGTTTACATTGGATTGGCTTGCTACAAATGACTTTGGAAAGCCCTCTAAGGATATGAACTTAAAGTACTTGGAATACAAAATAGGCTTGAAAGAAAGCACTCTTATACAACAATACCCGCTAGATCACATTTTTATAAAGGATCCCCCATTGGTTGAGAAAATTGGATGGGAAGAATTTAAGTCTGTGTATTTGGACAAACAAAATGTAAAGCTTGATGTTGATAGGTTTAGGCCTACATTGCAGAAAGCCTTTGAGCTATTGCATCAATAA

Predicted protein sequences of Glyma08g05490

Limit To All Plant Sequences

>Glyma08g05490.1   sequence type=predicted peptide   gene model=Glyma08g05490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIYDTVLAKSFSRYDQKRLGYGAFVSCLFIILSLCTVFKPYLGPVHVLSLKLFIDVDTKMLITSSSLQIAKVKGKETKKEELLCTSEERTEFCQARGDIRVHGKSSTVSIVSSKTTMLEKTMSRSLKPYARRGDIDAMNRVREWSVKAVNASQKAPQCTQSHNITAVLFSTGGYSGNHFHEFTDIVIPLFLTARQFNGEVQFIITDKRPWWISKHKPLLKKLSNYETMDIDGDDQVHCFPSVTVGLKRYQKELSIDPQKYSYSMKDFRDLLRSSYALKRVEAMKIRDGLRGKPRLMILSRKRSRSFTNTDEIAKMAASLGFDVIVKEAGWSMWGFANVVNSCDVLLGVHGAGLTNILFLPENAVFIQVVPYGGFTLDWLATNDFGKPSKDMNLKYLEYKIGLKESTLIQQYPLDHIFIKDPPLVEKIGWEEFKSVYLDKQNVKLDVDRFRPTLQKAFELLHQ*

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