Glyma08g05480 - SoyBase

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Report for Sequence Feature Glyma08g05480

Feature Type:	gene_model
Chromosome:	Gm08
Start:	3926853
stop:	3936263
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g05480

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G48650	AT	Annotation by Michelle Graham. TAIR10: DEA(D/H)-box RNA helicase family protein \| chr1:17989670-17995169 REVERSE LENGTH=1197	SoyBase	E_val: 0	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
GO:0003725	GO-mf	Annotation by Michelle Graham. GO Molecular Function: double-stranded RNA binding	SoyBase	N/A	ISS
GO:0004386	GO-mf	Annotation by Michelle Graham. GO Molecular Function: helicase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0008026	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity	SoyBase	N/A	ISS
KOG0920	KOG	ATP-dependent RNA helicase A	JGI		ISS
PTHR18934	Panther	ATP-DEPENDENT RNA HELICASE	JGI		ISS
PTHR18934:SF68	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00035	PFAM	Double-stranded RNA binding motif	JGI		ISS
PF00270	PFAM	DEAD/DEAH box helicase	JGI		ISS
PF00271	PFAM	Helicase conserved C-terminal domain	JGI		ISS
PF04408	PFAM	Helicase associated domain (HA2)	JGI		ISS
PF07717	PFAM	Domain of unknown function (DUF1605)	JGI		ISS
UniRef100_G7LCG1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ATP-dependent RNA helicase A-like protein n=1 Tax=Medicago truncatula RepID=G7LCG1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KQG1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KQG1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g05480

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g05480

Paralog	Evidence	Comments
Glyma05g34180	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g05480 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g050200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g05480

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g05480

Limit To All Plant Sequences

>Glyma08g05480.1   sequence type=CDS   gene model=Glyma08g05480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTATGGCATATTCCGGCATATTTCAGGGCTTCATCAGATTCAAAGCCATGTCGCGCCTTCGTTCCACTCCTCTCAGACCTTCTCTTCCCTCCATTCCTCTTCACCGCACCGCCATTCGCCTCCGCCATCACTCATGCTCCTTCGCGCTTCAAGTCGTCAAGAACACGCGCCAGAGGACCCTCAAGTTGCCGTTTTGGCACCAACGCAGCTCCACCTACGGTCGTTTCGCCTACCAGGATGTCTCCAGTGACGAATCCGATGTTGAATTCGCCTCTTCTCCCTCTCACAACCAACAACTGGGTGATTCAACTCACGAGAACATTGACGAGTGGAGATGGAAGCTCACCATGCTTATGCGCAACAAAGACGACCAAGAAGTGGTGTCCAGGGAGAAGAAGGACCGTCGCGATTTCGAGCAACTTTCCACTGTAGCTTCCAGGATGGGTTTGTATAGCCGGCAGTATGCAAGAGTTGTTGTGTTTAGCAAGGCGCCTTTGCCAAATTACCGCCCTGATTTGGATGATAAGCGTCCGCAAAGAGAGGTAGTCTTACCACTTGGTGTTCATAAAGAAGTAGACGCTCATCTCCTTGCCCATCTTTCACAAAAGGCTAGAAACAAGTGGGGTTCTTTGAGTGATTCCTTGCATAAATCAAGGGATTCTAGAAGCATCCCAGCCAATGAAGGAATGTATGAACAACCAGAGCCCATGACCCATAATAGTGTGGTCAAGGAGAAAATCCTTGATCGAAAAAGTTTGCAACTGCTTCATCGGCAACATGATTGGCAGGAGTCTCCTGAAGGGCAAAAGATGCTTGAATTTCGTAGAAGTCTTCCTGCTTTCAAAGAGAAGGATGCATTTCTGAGAGTTATTTCACAGAATCAGGTCGTTGTTGTCTCAGGTGAAACTGGTTGTGGTAAGACCACACAACTTCCTCAATACATATTAGAATCTGAGACTGAAGCGGCACGTGGAGCTGTATGTAACATCATTTGTACTCAGCCTAGAAGAATATCTGCTATGTCTGTTTCTGAAAGAGTTGCAGCAGAACGTGGGGAGAAATTGGGAGAATCTGTTGGATACAAAGTTCGTCTGGAGGGTATGAAAGGGAGAGATACTCGTCTTCTTTTTTGCACCACGGGTGTATTATTGCGGAGACTGCTTGTGGATAGGAATTTAAAAGGTGTAACTCATGTTATTGTTGATGAAATTCATGAACGTGGAATGAACGAAGATTTTCTTCTCATTGTCCTGAAGGAACTTCTCCCTCATCGCCCTGATTTGAGGTTGATTTTGATGAGTGCTACCTTAAATGCTGAGCTTTTTTCTTCATACTTTAATGGTGCTCCAACTATGCATATTCCTGGTTTTACATTTCCAGTTCGAGCACATTTTCTTGAGGATATTCTGGAAAGGACTGGATATCGGTTGACACCTTCTAATCAAATTGATGACTATGGTCAAGAGAAAACATGGAAAATGCAAAAGCAAGCTCAAGCTTTCAGAAAAAGAAAGAGCCAGATTGCTTCTGCTGTTGAGGATGCTTTAGAAGTTGCAGAATTTAAGGGGTATAGCCTACGCACTCGAGATTCGTTGTCCTGCTGGTGCCCTGACTCAATTGGTTTTAACCTTATTGAACATGTGCTTTGCCACATTGTTAAGAATGAAAGGCCAGGTGCTGTTTTGGTTTTTATGACTGGTTGGGATGATATAAACTCTTTGAAGGATCAACTTCAAGTTCATCCTTTGTTGGGTGATCATAGCCAAGTATTGATTCTTGCATGCCATGGCTCCATGGCCAGCTCTGAGCAGAGGTTGATATTTGAAAATCCTGAAGGAGGGGTGAGGAAAATTGTTCTAGCAACTAACATGGCTGAGACTAGTATTACCATCAATGATGTTGTCTTTGTGGTTGACATTGGAAAAGCAAAAGAAACATCATATGACGCCTTAAATAACACTCCTTGTTTGCTTCCATCTTGGATCTCAAAAGCTGCTGCCCGGCAGAGAAGAGGAAGGGCTGGTCGTGTTCAGCCTGGTGAATGCTACCATCTTTATCCCAGATGTGTTTATGATGCTTTTGCTGATTATCAATTGCCAGAGCTTTTGAGAACACCTTTGCAGTCCTTATGTCTGCAAATCAAAACTCTACAACTTGGAAGCATCTCTGAGTTTTTATCTAGAGCTCTACAGCCACCAGAGCCTCTATCGGTTCAAAATGCTATTGATTATTTGAAGATTATTGGGGCCTTAGACGAGAATGAAAATTTAACAGTTTTAGGGCACAAATTGGCAATGCTTCCTGTGGAGCCCAAACTTGGCAAGATGCTCATTTTGGGAGCAATCTTCAAGTGTTTGGATCCCATAATGACAGTTGTTGCTGGTCTTAGTGTAAGAGATCCATTTGTGATGCCGTCTGACAAGAAGGATCTTGCAGAGTCTGCCAAAGCCCAATTAGCTGCTCGTGGCTATAGTGATCATCTGGCACTCATCCGGGCTTACGAGGGTTGGAGAGATGCTGAAGCTCAGCAAGCTGGTTACGAGTACTGCTGGCGGAATTTTCTTTCTTCTCAAACACTTAGGGCCATTGACTCTCTTCGAAAGCAATTCTTTTATTTGCTCAAAGATATTGGTCTGGTCAATAACAATTCTGAAACCTACAATACATGGAGTCATGAAGAGCATCTACTCCGAGCAGTCATTTGTGCGGGTTTGTTTCCTGGAATATCCTCTGTTGTGAACAAAGATAAGTCAATAGCGCTGAAAACAATGGAGGATGGTCAGGTTCTTTTGTATTCTAGCTCTGTAAATGGTTGTGTCTCCCGAATTCCATTCCCATGGTTAGTGTTTAATGAAAAGGTGAAAGTGAATTCAGTATTTCTTAGGGATTCAACTGGAATATCAGATTCAGTGCTTCTCTTATTTGGTGGGAATGTATCCAGAGGTGGACTAGATGGTCACCTGAAAATGTTGGGAGGGTATTTGGAGTTTTTCATGAAACCAGAATTAGCCAAGACTTACTTGAGCTTAAAGATGGAACTGGAAGAACTGATACAGAAAAAACTTTTGGATCCCATGTTGGAAACACAATCGCATAGTGAGCTGCTTTCTGCTGTTAGATTGTTGGTATCAGAGGATCATTGTGATGGGAGATTTGTCTTTGGTCGCCAGGTCCTACCACAATCAAAGAAGGAAACAAACTCCAAAACTGGTGGTGGAGCTGAGGGTAAAAATTATAAAAATCATCTTCAAGCATTCCTTAACAGGGCTGGACATGATTCACCAACTTACAAAACAAAGGAGCTGAAAAACAACCAATTCCGTACTACTGTCGTATTTAATGGGTTGAATTTTGTTGGTCAGCCATGCAGCAGCAAAAAATTAGCAGAAAAATCTGCTGCTGCTGAGGCTCTATTATGGATAAAAGGGGATGGCCATTCATCTGATGATATTGACCATGCATCAGTGCTTTTGAAAAAGAGCAACAAGAAAAGTAGGAAAAATTCGTTTAGTGGTGCTAAATGGAGTTGA

Predicted protein sequences of Glyma08g05480

Limit To All Plant Sequences

>Glyma08g05480.1   sequence type=predicted peptide   gene model=Glyma08g05480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTMAYSGIFQGFIRFKAMSRLRSTPLRPSLPSIPLHRTAIRLRHHSCSFALQVVKNTRQRTLKLPFWHQRSSTYGRFAYQDVSSDESDVEFASSPSHNQQLGDSTHENIDEWRWKLTMLMRNKDDQEVVSREKKDRRDFEQLSTVASRMGLYSRQYARVVVFSKAPLPNYRPDLDDKRPQREVVLPLGVHKEVDAHLLAHLSQKARNKWGSLSDSLHKSRDSRSIPANEGMYEQPEPMTHNSVVKEKILDRKSLQLLHRQHDWQESPEGQKMLEFRRSLPAFKEKDAFLRVISQNQVVVVSGETGCGKTTQLPQYILESETEAARGAVCNIICTQPRRISAMSVSERVAAERGEKLGESVGYKVRLEGMKGRDTRLLFCTTGVLLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKELLPHRPDLRLILMSATLNAELFSSYFNGAPTMHIPGFTFPVRAHFLEDILERTGYRLTPSNQIDDYGQEKTWKMQKQAQAFRKRKSQIASAVEDALEVAEFKGYSLRTRDSLSCWCPDSIGFNLIEHVLCHIVKNERPGAVLVFMTGWDDINSLKDQLQVHPLLGDHSQVLILACHGSMASSEQRLIFENPEGGVRKIVLATNMAETSITINDVVFVVDIGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRCVYDAFADYQLPELLRTPLQSLCLQIKTLQLGSISEFLSRALQPPEPLSVQNAIDYLKIIGALDENENLTVLGHKLAMLPVEPKLGKMLILGAIFKCLDPIMTVVAGLSVRDPFVMPSDKKDLAESAKAQLAARGYSDHLALIRAYEGWRDAEAQQAGYEYCWRNFLSSQTLRAIDSLRKQFFYLLKDIGLVNNNSETYNTWSHEEHLLRAVICAGLFPGISSVVNKDKSIALKTMEDGQVLLYSSSVNGCVSRIPFPWLVFNEKVKVNSVFLRDSTGISDSVLLLFGGNVSRGGLDGHLKMLGGYLEFFMKPELAKTYLSLKMELEELIQKKLLDPMLETQSHSELLSAVRLLVSEDHCDGRFVFGRQVLPQSKKETNSKTGGGAEGKNYKNHLQAFLNRAGHDSPTYKTKELKNNQFRTTVVFNGLNFVGQPCSSKKLAEKSAAAEALLWIKGDGHSSDDIDHASVLLKKSNKKSRKNSFSGAKWS*

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