Glyma08g05470 - SoyBase

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Report for Sequence Feature Glyma08g05470

Feature Type:	gene_model
Chromosome:	Gm08
Start:	3923886
stop:	3926407
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g05470

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G18190	AT	Annotation by Michelle Graham. TAIR10: TCP-1/cpn60 chaperonin family protein \| chr3:6232226-6233836 FORWARD LENGTH=536	SoyBase	E_val: 0	ISS
GO:0006094	GO-bp	Annotation by Michelle Graham. GO Biological Process: gluconeogenesis	SoyBase	N/A	ISS
GO:0006096	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycolysis	SoyBase	N/A	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0007010	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0010498	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasomal protein catabolic process	SoyBase	N/A	ISS
GO:0044267	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular protein metabolic process	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0051082	GO-mf	Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding	SoyBase	N/A	ISS
KOG0358	KOG	Chaperonin complex component, TCP-1 delta subunit (CCT4)	JGI		ISS
PTHR11353	Panther	CHAPERONIN	JGI		ISS
PTHR11353:SF26	Panther	CHAPERONIN CONTAINING T-COMPLEX PROTEIN 1, DELTA SUBUNIT, TCPD	JGI		ISS
PF00118	PFAM	TCP-1/cpn60 chaperonin family	JGI		ISS
UniRef100_I1KQG0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: T-complex protein 1 subunit delta n=1 Tax=Glycine max RepID=I1KQG0_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1KQG0	UniRef	Annotation by Michelle Graham. Best UniRef hit: T-complex protein 1 subunit delta n=1 Tax=Glycine max RepID=I1KQG0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g05470

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g05470

Paralog	Evidence	Comments
Glyma05g34190	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g05470 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g050100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g05470

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g05470

Limit To All Plant Sequences

>Glyma08g05470.1   sequence type=CDS   gene model=Glyma08g05470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGGCAATCGCGGCTCCCCAACACAGATCCTCGAAGACAGAGTCCTACGTGGACAATAAGCGCAAGGAGGATATCCGCCATGCCAACATCGTGGCCGCACGCTCAGTCGCCAACGCGGTTCGCACCAGTCTGGGCCCTAAGGGCATGGACAAGATGATCTCCACCTCCTCCGACGAGGTCATCATCACCAACGACGGCGCCACCATCCTCAACAAGATGCAGGTCCTCCAGCCCGCCGCCAAGATGCTCGTCGAGCTCTCCAAGTCCCAGGACTCCGCCGCCGGCGACGGCACCACCACCGTCGTCGTCATCGCTGGCGCCCTCCTCGAGCAGTGCCTCCTCCTCCTTTCCCACGGCATCCACCCCACCGTCGTCTCCGACGCCCTCCACAAGGCTGCCGTCAAGGCCGTCGACGTTCTCACCGCCATGGCCGTCCCCGTCGAACTCTCCGACCGCGACTCCCTCGTGAAGTCCGCCAGCACTTCCCTCAACAGCAAGGTCGTCAGCCAATACTCCACGCTCCTCGCTCCCCTCGCCGTCGACGCCGTTCTCTCCGTCGTGGATGCCCCCAAGCCCGACATGGTCGATCTCCGCGATGTCAAGATCGTGAAGAAACTCGGCGGCACCGTCGACGACACCGAGCTCGTGAAAGGTCTCGTCTTTGACAAGAAGGTCAGCCACGCCGCCGGGGGACCCACCCGCATGGAGAACGCCAAGATCGCCGTCATTCAATTCCAGATTTCGCCGCCCAAAACCGACATCGAACAGAGCATTGTGGTGAGTGATTACTCTCAGATGGATAGGATTCTAAAAGAAGAGCGTAGTTATATTCTCAGCATGATTAAGAAGATCAAGGCCACTGGTTGTAATGTGTTGTTGATTCAGAAGAGTATTTTGAGGGATGCGGTTACTGATTTGTCCTTGCATTACCTTGCAAAAGCTAAGATTTTGGTCATTAAGGATGTGGAGAGGGATGAGATTGAGTTCATTACCAAGACACTGAATTGTTTGCCCATTGCTAACATTGAGCATTTTCGCACTGAGAAGTTGGGTTATGCTGATCTTGTGGAAGAGTTTTCTCTTGGGGATGGGAAGATTGTGAAGATTACTGGTATTAAGGAGATGGGGAAGACCACCACTGTGCTTGTACGTGGGTCTAATCAGCTTGTGCTCGATGAGGCTGAGCGGAGTTTGCACGATGCTTTGTGTGTTGTTAGGTGTTTGGTTGCCAAGAGGTTTCTCATTGCCGGCGGTGGTGCCCCTGAGATTGAGCTCTCCAGGCAGCTGGGTGCCTGGGCTAAGGTGTTGCATGGGATGGAGGGTTACTGTGTGAGGGCATTCGCTGAGGCGCTTGAAGTTATTCCCTATACTCTGGCTGAAAATGCTGGTTTGAACCCGATTGCCATTGTTACTGAGCTAAGGAATCGTCATGCACAGGGTGAGATAAATGCTGGAATAAATGTAAGGAAGGGGCAGATTACCAACATCTTGGAGGAGAATGTGGTGCAGCCCCTGCTTGTGAGCACCAGTGCGATCACCTTGGCGACAGAGTGTGTGCGGATGATTTTGAAGATTGATGATATTGTAACTGTGAGGTAG

Predicted protein sequences of Glyma08g05470

Limit To All Plant Sequences

>Glyma08g05470.1   sequence type=predicted peptide   gene model=Glyma08g05470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSAIAAPQHRSSKTESYVDNKRKEDIRHANIVAARSVANAVRTSLGPKGMDKMISTSSDEVIITNDGATILNKMQVLQPAAKMLVELSKSQDSAAGDGTTTVVVIAGALLEQCLLLLSHGIHPTVVSDALHKAAVKAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLLAPLAVDAVLSVVDAPKPDMVDLRDVKIVKKLGGTVDDTELVKGLVFDKKVSHAAGGPTRMENAKIAVIQFQISPPKTDIEQSIVVSDYSQMDRILKEERSYILSMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKAKILVIKDVERDEIEFITKTLNCLPIANIEHFRTEKLGYADLVEEFSLGDGKIVKITGIKEMGKTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVAKRFLIAGGGAPEIELSRQLGAWAKVLHGMEGYCVRAFAEALEVIPYTLAENAGLNPIAIVTELRNRHAQGEINAGINVRKGQITNILEENVVQPLLVSTSAITLATECVRMILKIDDIVTVR*

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