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Report for Sequence Feature Glyma08g05470

Feature Type:gene_model
Chromosome:Gm08
Start:3923886
stop:3926407
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G18190AT Annotation by Michelle Graham. TAIR10: TCP-1/cpn60 chaperonin family protein | chr3:6232226-6233836 FORWARD LENGTH=536 SoyBaseE_val: 0ISS
GO:0006094GO-bp Annotation by Michelle Graham. GO Biological Process: gluconeogenesis SoyBaseN/AISS
GO:0006096GO-bp Annotation by Michelle Graham. GO Biological Process: glycolysis SoyBaseN/AISS
GO:0006457GO-bp Annotation by Michelle Graham. GO Biological Process: protein folding SoyBaseN/AISS
GO:0007010GO-bp Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0010498GO-bp Annotation by Michelle Graham. GO Biological Process: proteasomal protein catabolic process SoyBaseN/AISS
GO:0044267GO-bp Annotation by Michelle Graham. GO Biological Process: cellular protein metabolic process SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0051082GO-mf Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding SoyBaseN/AISS
KOG0358 KOG Chaperonin complex component, TCP-1 delta subunit (CCT4) JGI ISS
PTHR11353Panther CHAPERONIN JGI ISS
PTHR11353:SF26Panther CHAPERONIN CONTAINING T-COMPLEX PROTEIN 1, DELTA SUBUNIT, TCPD JGI ISS
PF00118PFAM TCP-1/cpn60 chaperonin family JGI ISS
UniRef100_I1KQG0UniRef Annotation by Michelle Graham. Most informative UniRef hit: T-complex protein 1 subunit delta n=1 Tax=Glycine max RepID=I1KQG0_SOYBN SoyBaseE_val: 0ISS
UniRef100_I1KQG0UniRef Annotation by Michelle Graham. Best UniRef hit: T-complex protein 1 subunit delta n=1 Tax=Glycine max RepID=I1KQG0_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma05g34190 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g050100 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma08g05470.1   sequence type=CDS   gene model=Glyma08g05470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGGCAATCGCGGCTCCCCAACACAGATCCTCGAAGACAGAGTCCTACGTGGACAATAAGCGCAAGGAGGATATCCGCCATGCCAACATCGTGGCCGCACGCTCAGTCGCCAACGCGGTTCGCACCAGTCTGGGCCCTAAGGGCATGGACAAGATGATCTCCACCTCCTCCGACGAGGTCATCATCACCAACGACGGCGCCACCATCCTCAACAAGATGCAGGTCCTCCAGCCCGCCGCCAAGATGCTCGTCGAGCTCTCCAAGTCCCAGGACTCCGCCGCCGGCGACGGCACCACCACCGTCGTCGTCATCGCTGGCGCCCTCCTCGAGCAGTGCCTCCTCCTCCTTTCCCACGGCATCCACCCCACCGTCGTCTCCGACGCCCTCCACAAGGCTGCCGTCAAGGCCGTCGACGTTCTCACCGCCATGGCCGTCCCCGTCGAACTCTCCGACCGCGACTCCCTCGTGAAGTCCGCCAGCACTTCCCTCAACAGCAAGGTCGTCAGCCAATACTCCACGCTCCTCGCTCCCCTCGCCGTCGACGCCGTTCTCTCCGTCGTGGATGCCCCCAAGCCCGACATGGTCGATCTCCGCGATGTCAAGATCGTGAAGAAACTCGGCGGCACCGTCGACGACACCGAGCTCGTGAAAGGTCTCGTCTTTGACAAGAAGGTCAGCCACGCCGCCGGGGGACCCACCCGCATGGAGAACGCCAAGATCGCCGTCATTCAATTCCAGATTTCGCCGCCCAAAACCGACATCGAACAGAGCATTGTGGTGAGTGATTACTCTCAGATGGATAGGATTCTAAAAGAAGAGCGTAGTTATATTCTCAGCATGATTAAGAAGATCAAGGCCACTGGTTGTAATGTGTTGTTGATTCAGAAGAGTATTTTGAGGGATGCGGTTACTGATTTGTCCTTGCATTACCTTGCAAAAGCTAAGATTTTGGTCATTAAGGATGTGGAGAGGGATGAGATTGAGTTCATTACCAAGACACTGAATTGTTTGCCCATTGCTAACATTGAGCATTTTCGCACTGAGAAGTTGGGTTATGCTGATCTTGTGGAAGAGTTTTCTCTTGGGGATGGGAAGATTGTGAAGATTACTGGTATTAAGGAGATGGGGAAGACCACCACTGTGCTTGTACGTGGGTCTAATCAGCTTGTGCTCGATGAGGCTGAGCGGAGTTTGCACGATGCTTTGTGTGTTGTTAGGTGTTTGGTTGCCAAGAGGTTTCTCATTGCCGGCGGTGGTGCCCCTGAGATTGAGCTCTCCAGGCAGCTGGGTGCCTGGGCTAAGGTGTTGCATGGGATGGAGGGTTACTGTGTGAGGGCATTCGCTGAGGCGCTTGAAGTTATTCCCTATACTCTGGCTGAAAATGCTGGTTTGAACCCGATTGCCATTGTTACTGAGCTAAGGAATCGTCATGCACAGGGTGAGATAAATGCTGGAATAAATGTAAGGAAGGGGCAGATTACCAACATCTTGGAGGAGAATGTGGTGCAGCCCCTGCTTGTGAGCACCAGTGCGATCACCTTGGCGACAGAGTGTGTGCGGATGATTTTGAAGATTGATGATATTGTAACTGTGAGGTAG

>Glyma08g05470.1   sequence type=predicted peptide   gene model=Glyma08g05470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSAIAAPQHRSSKTESYVDNKRKEDIRHANIVAARSVANAVRTSLGPKGMDKMISTSSDEVIITNDGATILNKMQVLQPAAKMLVELSKSQDSAAGDGTTTVVVIAGALLEQCLLLLSHGIHPTVVSDALHKAAVKAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLLAPLAVDAVLSVVDAPKPDMVDLRDVKIVKKLGGTVDDTELVKGLVFDKKVSHAAGGPTRMENAKIAVIQFQISPPKTDIEQSIVVSDYSQMDRILKEERSYILSMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKAKILVIKDVERDEIEFITKTLNCLPIANIEHFRTEKLGYADLVEEFSLGDGKIVKITGIKEMGKTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVAKRFLIAGGGAPEIELSRQLGAWAKVLHGMEGYCVRAFAEALEVIPYTLAENAGLNPIAIVTELRNRHAQGEINAGINVRKGQITNILEENVVQPLLVSTSAITLATECVRMILKIDDIVTVR*







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