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Report for Sequence Feature Glyma08g05461

Feature Type:gene_model
Chromosome:Gm08
Start:3910973
stop:3913654
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g05461
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G18215AT Annotation by Michelle Graham. TAIR10: Protein of unknown function, DUF599 | chr3:6240968-6242358 FORWARD LENGTH=244 SoyBaseE_val: 4.00E-96ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF04654PFAM Protein of unknown function, DUF599 JGI ISS
UniRef100_I1KQF8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KQF8_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q9LV18UniRef Annotation by Michelle Graham. Most informative UniRef hit: Emb|CAA16536.1 n=1 Tax=Arabidopsis thaliana RepID=Q9LV18_ARATH SoyBaseE_val: 2.00E-93ISS

Expression Patterns of Glyma08g05461
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g05461 not represented in the dataset
Glyma08g05461 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g05461
ParalogEvidenceComments
Glyma05g34220 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g05461 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g050000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g05461
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g05461
>Glyma08g05461.1   sequence type=CDS   gene model=Glyma08g05461   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAAGGAGCAGCTTGAATATGTGTTGGTGCCATTGGGTCTGTTGGTGTACCTGACATACCATATATGGCTTGTCTATACCATTGTACGCAACCCTCTTCGAACTGTCATTGGCCTTAATGCTGAGTCTCGTCATCAGTGGGTTCTTTTCATGATGAGTGATCCGTTGAAGAATGGGGTTTTGGCAGTTCAAACTATTCGCAACAATATCATGGCATGTACTCTTCTATCTACAACGGCCATCACACTCAGTTCACTTATTGGTATTTTTGCTAGCGGCACATGGAGTTCTGATGACACGGCTTTCATACCTTATGGCCGTACTTCAATCAAACATATTTCTGTCACCATTTGCTTCCTTGTTGCATTTTTATGCAATGTGCAGTCTATAAGATACTATTGCCATGTCAGTTTCTTAATCACTGCACCAACACTCAGAGACAAAAGGGAGTATATGGAATATATTGCTGTGACTTTGAATCGTGGGAGTCATGCCTGGTCCATTGGACTTCGAGCATTTTACTTGTCATTTCCATTCTTCCTCTGGATTTATGGGCCCATACCCATGTTTGCATGTTGCTGCTTGACGTCACTTGTTTTGTTCTTCTTGGATACAACAGCTAAAATCACGCGGAATCTTCATAGTAACTCATTCAGGAAAGAGAGGGGAACTCATGATGTAGAGTCTGCTGTGGAACCTGATTATCATCCTTTGCCTGGTAACAATTTGTCTCAAAACTCAGGTGTCAATCATGTATAA
Predicted protein sequences of Glyma08g05461
>Glyma08g05461.1   sequence type=predicted peptide   gene model=Glyma08g05461   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKEQLEYVLVPLGLLVYLTYHIWLVYTIVRNPLRTVIGLNAESRHQWVLFMMSDPLKNGVLAVQTIRNNIMACTLLSTTAITLSSLIGIFASGTWSSDDTAFIPYGRTSIKHISVTICFLVAFLCNVQSIRYYCHVSFLITAPTLRDKREYMEYIAVTLNRGSHAWSIGLRAFYLSFPFFLWIYGPIPMFACCCLTSLVLFFLDTTAKITRNLHSNSFRKERGTHDVESAVEPDYHPLPGNNLSQNSGVNHV*






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