Report for Sequence Feature Glyma08g05420
Feature Type: gene_model
Chromosome: Gm08
Start: 3862396
stop: 3867260
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g05420
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G73740 AT
Annotation by Michelle Graham. TAIR10: UDP-Glycosyltransferase superfamily protein | chr1:27734451-27736008 FORWARD LENGTH=431
SoyBase E_val: 5.00E-97 ISS
GO:0005975 GO-bp
Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process
SoyBase N/A ISS
GO:0009058 GO-bp
Annotation by Michelle Graham. GO Biological Process: biosynthetic process
SoyBase N/A ISS
GO:0009693 GO-bp
Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process
SoyBase N/A ISS
GO:0030259 GO-bp
Annotation by Michelle Graham. GO Biological Process: lipid glycosylation
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0016757 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups
SoyBase N/A ISS
GO:0016758 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups
SoyBase N/A ISS
GO:0030246 GO-mf
Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding
SoyBase N/A ISS
PTHR21015 Panther
GLYCOSYLTRANSFERASE
JGI ISS
PTHR21015:SF22 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF03033 PFAM
Glycosyltransferase family 28 N-terminal domain
JGI ISS
PF04101 PFAM
Glycosyltransferase family 28 C-terminal domain
JGI ISS
UniRef100_B9SFW3 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: UDP-N-acetylglucosamine--N-acetylmuramyl-(Pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase, putative n=1 Tax=Ricinus communis RepID=B9SFW3_RICCO
SoyBase E_val: 2.00E-121 ISS
UniRef100_UPI0002338B47 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0002338B47 related cluster n=1 Tax=unknown RepID=UPI0002338B47
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g05420
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma08g05420
Paralog Evidence Comments
Glyma05g34250 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g05420 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g049500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g05420
Coding sequences of Glyma08g05420
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g05420.2 sequence type=CDS gene model=Glyma08g05420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
AGAGTATCAATCTCATGCCACTCATCACCCTCCAACTCCAACAATGACCCTATCCGCGTGGCGTTCTCCGGCGACGGCACCGGCAGCAACGTGTATCCTGCGTTGGCCATCGCGGAGGAGCTCAAAACCGCCAACCCCACGTGCCAGTTCCTCTTCTTGGGCACCCCCAACAGCGTGGAAAGCGCCGCAATCTCCTCCGCAGGCTACGACTTCGCCTCTGTCTCTTCACCACCCCAAAACCTGGTCTTCTTCCCTCAACGTCTCTTGAAGTCTCTCATCCAATGTCTCTGCCACCTCCGAGACTTCCAACCGCACGTGGTTGTCGGCACCGGCGGCTACGTCTCTTTCCCCGCCTGCATCGCTGCCAAGCTCAGAGGCGGCACCAACGTTGTCATCCACGAACCCAACTCTGTCCCTGGCTTCGCCAACTCTCTTCTTTCGTTCCTCGCTGATGCCATCTTCGTTGCTTTTAACTCCACACTCGATAGTTTCCCGAGGAACAAGTGTCTGGTGTGTGGTAACCCCGTGAGGTTGTCTATCAGGAACCTTGTTTCCAAGGCGACTGCGATGTCTCATTTTTTTCCCGATAGTGGCTTGTATGTTATTTGGCAAACCGGGGTTGAAGCCTTCGATGAAATGGATAGCCTTGTTAAAACTCATCCACGCTTGTATATCACACCGTTCATGCATTGTATGGATTTGGCATATGCAGCGGCAGACTTAATTGTTTCTAGAGCAGGCGCAATGACTTGCTATGAAATATCGGCAACTGGGAAACCATCTATCCTGATACCCTCGCCAAATTTCTCTGAGGGGAATCAATTCAGAAATGCTTCCTTGATGGCAGACGTAGCTGGTGTGACTGTTATTACTGAGGATGAGCTAGACTCAAGTACTCTAGCCATTGCAATTGAAAAGATTGGGGACAAGAAGATGGAAGATATGTCTGAGAGGGCTCTGAAAGCTGCAAACCCCAATGCATCTCCTTAG
Predicted protein sequences of Glyma08g05420
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g05420.2 sequence type=predicted peptide gene model=Glyma08g05420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
RVSISCHSSPSNSNNDPIRVAFSGDGTGSNVYPALAIAEELKTANPTCQFLFLGTPNSVESAAISSAGYDFASVSSPPQNLVFFPQRLLKSLIQCLCHLRDFQPHVVVGTGGYVSFPACIAAKLRGGTNVVIHEPNSVPGFANSLLSFLADAIFVAFNSTLDSFPRNKCLVCGNPVRLSIRNLVSKATAMSHFFPDSGLYVIWQTGVEAFDEMDSLVKTHPRLYITPFMHCMDLAYAAADLIVSRAGAMTCYEISATGKPSILIPSPNFSEGNQFRNASLMADVAGVTVITEDELDSSTLAIAIEKIGDKKMEDMSERALKAANPNASP*