Glyma08g05420 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g05420

Feature Type:	gene_model
Chromosome:	Gm08
Start:	3862396
stop:	3867260
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g05420

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G73740	AT	Annotation by Michelle Graham. TAIR10: UDP-Glycosyltransferase superfamily protein \| chr1:27734451-27736008 FORWARD LENGTH=431	SoyBase	E_val: 5.00E-97	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0009058	GO-bp	Annotation by Michelle Graham. GO Biological Process: biosynthetic process	SoyBase	N/A	ISS
GO:0009693	GO-bp	Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process	SoyBase	N/A	ISS
GO:0030259	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid glycosylation	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
GO:0016758	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups	SoyBase	N/A	ISS
GO:0030246	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding	SoyBase	N/A	ISS
PTHR21015	Panther	GLYCOSYLTRANSFERASE	JGI		ISS
PTHR21015:SF22	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF03033	PFAM	Glycosyltransferase family 28 N-terminal domain	JGI		ISS
PF04101	PFAM	Glycosyltransferase family 28 C-terminal domain	JGI		ISS
UniRef100_B9SFW3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: UDP-N-acetylglucosamine--N-acetylmuramyl-(Pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase, putative n=1 Tax=Ricinus communis RepID=B9SFW3_RICCO	SoyBase	E_val: 2.00E-121	ISS
UniRef100_UPI0002338B47	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338B47 related cluster n=1 Tax=unknown RepID=UPI0002338B47	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g05420

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g05420

Paralog	Evidence	Comments
Glyma05g34250	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g05420 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g049500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g05420

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g05420

Limit To All Plant Sequences

>Glyma08g05420.2   sequence type=CDS   gene model=Glyma08g05420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGAGTATCAATCTCATGCCACTCATCACCCTCCAACTCCAACAATGACCCTATCCGCGTGGCGTTCTCCGGCGACGGCACCGGCAGCAACGTGTATCCTGCGTTGGCCATCGCGGAGGAGCTCAAAACCGCCAACCCCACGTGCCAGTTCCTCTTCTTGGGCACCCCCAACAGCGTGGAAAGCGCCGCAATCTCCTCCGCAGGCTACGACTTCGCCTCTGTCTCTTCACCACCCCAAAACCTGGTCTTCTTCCCTCAACGTCTCTTGAAGTCTCTCATCCAATGTCTCTGCCACCTCCGAGACTTCCAACCGCACGTGGTTGTCGGCACCGGCGGCTACGTCTCTTTCCCCGCCTGCATCGCTGCCAAGCTCAGAGGCGGCACCAACGTTGTCATCCACGAACCCAACTCTGTCCCTGGCTTCGCCAACTCTCTTCTTTCGTTCCTCGCTGATGCCATCTTCGTTGCTTTTAACTCCACACTCGATAGTTTCCCGAGGAACAAGTGTCTGGTGTGTGGTAACCCCGTGAGGTTGTCTATCAGGAACCTTGTTTCCAAGGCGACTGCGATGTCTCATTTTTTTCCCGATAGTGGCTTGTATGTTATTTGGCAAACCGGGGTTGAAGCCTTCGATGAAATGGATAGCCTTGTTAAAACTCATCCACGCTTGTATATCACACCGTTCATGCATTGTATGGATTTGGCATATGCAGCGGCAGACTTAATTGTTTCTAGAGCAGGCGCAATGACTTGCTATGAAATATCGGCAACTGGGAAACCATCTATCCTGATACCCTCGCCAAATTTCTCTGAGGGGAATCAATTCAGAAATGCTTCCTTGATGGCAGACGTAGCTGGTGTGACTGTTATTACTGAGGATGAGCTAGACTCAAGTACTCTAGCCATTGCAATTGAAAAGATTGGGGACAAGAAGATGGAAGATATGTCTGAGAGGGCTCTGAAAGCTGCAAACCCCAATGCATCTCCTTAG

Predicted protein sequences of Glyma08g05420

Limit To All Plant Sequences

>Glyma08g05420.2   sequence type=predicted peptide   gene model=Glyma08g05420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
RVSISCHSSPSNSNNDPIRVAFSGDGTGSNVYPALAIAEELKTANPTCQFLFLGTPNSVESAAISSAGYDFASVSSPPQNLVFFPQRLLKSLIQCLCHLRDFQPHVVVGTGGYVSFPACIAAKLRGGTNVVIHEPNSVPGFANSLLSFLADAIFVAFNSTLDSFPRNKCLVCGNPVRLSIRNLVSKATAMSHFFPDSGLYVIWQTGVEAFDEMDSLVKTHPRLYITPFMHCMDLAYAAADLIVSRAGAMTCYEISATGKPSILIPSPNFSEGNQFRNASLMADVAGVTVITEDELDSSTLAIAIEKIGDKKMEDMSERALKAANPNASP*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain