Glyma08g05410 - SoyBase

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Report for Sequence Feature Glyma08g05410

Feature Type:	gene_model
Chromosome:	Gm08
Start:	3848627
stop:	3853417
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g05410

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G73760	AT	Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein \| chr1:27739366-27741161 REVERSE LENGTH=367	SoyBase	E_val: 1.00E-88	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR22937	Panther	RING FINGER CONTAINING PROTEIN	JGI		ISS
PTHR22937:SF9	Panther	ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEI	JGI		ISS
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI		ISS
UniRef100_G7KMM3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RING finger protein n=2 Tax=Medicago truncatula RepID=G7KMM3_MEDTR	SoyBase	E_val: 6.00E-134	ISS
UniRef100_I1KQF3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KQF3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g05410

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g05410

Paralog	Evidence	Comments
Glyma05g34270	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g05410 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g049400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g05410

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g05410

Limit To All Plant Sequences

>Glyma08g05410.1   sequence type=CDS   gene model=Glyma08g05410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTGTCACAAACACAACAACACCAACTGTGGCAGAACACATCAAATGGAGAAGACCCAGAAACCAATTCAACCACCATCAGCACCCCATTTCAGAAACCGATCCAAACCCTCAAATCCCTTCCATTATCCAATCCACTAGGTGCAAGTCTACCATTTCCTCCTTGCTCCTCTCCACTTTCTCCAACAACACCTCCTCCAACAATGACACTCCCACCACCTTCAATGCCACTGCCCATAGCAAGAAAAAAAGCAACTTTTCTGCATCAACCTTCAGAGGGTTGGGGTGCACCGCCGGAGCGTCGCAGCAGGTGTCGGTGCCGGCGGTGATTCGCTCCTCCGCCGATTGGCAAGGAAAGAAAACAAGAAAAAAGAAGCACAAGAGAAGCAGCAGCAGCAGCAAGAACAAGACTTTCCATGGTGGGGTTCTAGAAGGGTCCAATCCAGAGTGCGTGGATTTTCAAGATGTTTGGTGTGGCCCTGGAATTGGGTTCTCAACAGATGCTGCTGCTGCTGCCTCTGTTGATTGTGTTGTGGCCAGGAAGAATGTCTCTTCTGCAAGAGGGAAAATTGATGTGGATAAGATCACTCACAGGGAGCGATCATCGTATGTGGGAAGGCGCACTGAAACCTTCACTTTTCTGGACAGTACTGATCCTGACATTTTCACACCACGCTCTGCCTCTGACTCTTATGGAACTGCAACATACTATCGTCATGTTAGAGATCCTTCCTCTGATGGTTTTGCTGAGATAATGATGCTTCAAGGGAGTCTACTAATGGGTGGACAACTAAATTCACATGATCATTTCAAAGACTGGAGACTTGATGTTGATAACATGTCCTATGAGCAATTGCTAGAGCTTGGTGAGAGAATTGGTCATGTGAACACTGGGCTTAAGGAAGATGAGATGGGACGGAACATAAGGAAGACTAGGCTTCAATTTTGGGATGATACATCAAAGCACCAAGTAGATAAAGAGTGCAGCATTTGTCAGGAGGAGTATGAAGCAGGAAATGAGTTGGGGAGGCTAAATTGTGAACACATCTATCACTTTCAGTGTATAAAACAATGGGCTGCACAAAAAAATTTCTGCCCAGTATGTAAGCAACAAGTTGCGGCTCGACACTGA

Predicted protein sequences of Glyma08g05410

Limit To All Plant Sequences

>Glyma08g05410.1   sequence type=predicted peptide   gene model=Glyma08g05410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPVTNTTTPTVAEHIKWRRPRNQFNHHQHPISETDPNPQIPSIIQSTRCKSTISSLLLSTFSNNTSSNNDTPTTFNATAHSKKKSNFSASTFRGLGCTAGASQQVSVPAVIRSSADWQGKKTRKKKHKRSSSSSKNKTFHGGVLEGSNPECVDFQDVWCGPGIGFSTDAAAAASVDCVVARKNVSSARGKIDVDKITHRERSSYVGRRTETFTFLDSTDPDIFTPRSASDSYGTATYYRHVRDPSSDGFAEIMMLQGSLLMGGQLNSHDHFKDWRLDVDNMSYEQLLELGERIGHVNTGLKEDEMGRNIRKTRLQFWDDTSKHQVDKECSICQEEYEAGNELGRLNCEHIYHFQCIKQWAAQKNFCPVCKQQVAARH*

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