Glyma08g05390 - SoyBase

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Report for Sequence Feature Glyma08g05390

Feature Type:	gene_model
Chromosome:	Gm08
Start:	3837971
stop:	3841619
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g05390

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G30970	AT	Annotation by Michelle Graham. TAIR10: zinc finger (C2H2 type) family protein \| chr1:11040613-11043593 REVERSE LENGTH=367	SoyBase	E_val: 7.00E-143	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009910	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of flower development	SoyBase	N/A	ISS
GO:0051568	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone H3-K4 methylation	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0042803	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity	SoyBase	N/A	ISS
GO:0046982	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein heterodimerization activity	SoyBase	N/A	ISS
KOG2893	KOG	Zn finger protein	JGI		ISS
PTHR23215	Panther	ZINC FINGER PROTEIN 207	JGI		ISS
UniRef100_G7LCD2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger protein n=1 Tax=Medicago truncatula RepID=G7LCD2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KQF1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KQF1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g05390

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g05390

Paralog	Evidence	Comments
Glyma05g34280	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g05390 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g049300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g05390

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g05390

Limit To All Plant Sequences

>Glyma08g05390.2   sequence type=transcript   gene model=Glyma08g05390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCACATTGTCCTTGGGCCTGATGCTGCTCCTCGCCATTGATTTGTACTATTGTTACGTACGTAAGCCTTCGATATAATTTGACAACGAACAAACAATAAATTTCAATTTCAATTTCCGCTTCTGACTCCGTGCCCTAGCTTCTTCTTCCTCCTCCTCCTCTGCCATTGCAGCAAGGCACACACCTCAGGCTCCAACCCATTTCACGAGGGATCGGATTCGCTCGCCATCATGGGGAAGAAGAAGAAGAGAGTTTCCTCGAAGGTGTGGTGTTATTACTGCGATCGCGAATTCGACGACGAGAAGATCTTGGTGCAGCATCAGAAAGCCAAGCACTTTAAGTGCCATGTCTGCCACAAGAAGCTCTCTACCGCTGGCGGCATGGCCATCCACGTCCTCCAGGTCCACAAGGAATCCGTCACCAAGGTACCCAACGCAAAACCTGGCAGAGAGAGTACGGATATTGAAATATATGGAATGCAAGGGATTCCACCAGATATCTTGGCTGCTCATTACGGTGAAGAAGAGGATGATGTTCCGTCAAAGGCAGCCAAGGTGGATATTCCACCAACTCAGCTTGTAGGTGGAATGATTCCACCTCCTTTGGGTACAGGATATCCTCCGCGACCAACCTTGCCCACAATGCCACCAATGTATAATCCTGCTGTACCTGTGCCTCCAAATGCTTGGATGGTTCCACCTCGACCTCAGCCATGGTTTTCACAGCCTCCAGCTGTTTCAGTTCCTCCTGCTGCCCCATACACACAGCAGCCATTATTTCCTGTGCAGAACGTGAGGCCTCCACTGCCAGCTACTGCTCCTGCGCTCCAAACTCAGATTACTCCTCCTGGATTGCCTACATCTGCACCTGTCCCAGTTTCACAACCTTTATTTCCTGTTGTTGGAAATAACCATACAACTACTCAAAGTTCAACATTTTCTGCTCCACCTCTGCCCTCAAGTGTTCCATCAGTTACTTCAGTGATGTCTGCAAATGTTCCTGTTGATACACATTTGAGCAGCAATTCTTCTGTAACAAGTAGTTATCAGGCTATAGGGATTCCAGGTGGAGCAGCTAGTAACTCACATTCTTATGCTTCTGGTCCAAATACTGGTGGTCCTTCAATTGGGCCTCCCCCAGTAATTGCAAACAAAGCTCCTGCTACTCAGCCTGCCACCAACGAAGTCTACTTAGTTTGGGATGATGAGGCAATGTCCATGGAGGAAAGAAGAATGTCTTTGCCAAAATATCAGGTGCATGATGAAAGTAGCCAGATGAGCTCCATTGATGCAGCCATAGATAAGAGGATTCTTGAGAGTAGGCTGGCTGGTCGTATGGCATTTTAGATCAATCTCATCCATACACTCTTGTCAAATTTCTTCAGTGATAAGGGCTCAAAATGGTATTTTAATAAAGCTTGACAGCGCGTGTTCAAGATTCCTTTATTTAAGGTCCGGCAAGTAATTGTTATTGGTGCAATTCTTTGCCAAAATGGGCAATGGGCCCTACGGTTATGGTGGAATCGAAGGAAAAATATTGAAATGGTTCTGATTTCTTACTTCTTAGGAAGTTGCAAAACTTTGTTTATTTCTCATTTCATACCTTTTCTCCCGTTGATGTTTGTAGTCAACCTTTAGGACGTGGTACTCAAAAGAGTATTATATATTTGCTGTAATCAGATTATTACATGTTTTGGGTGGAAAATTGACGGCAATTTTTGGTTGGTTATATGCTTCGTAATTAGTGTCTCTAATTGTGTAAAAGACAGCAAAAGGTGTACTTTGGTGGAGAGACAAAAATACATATTGGACATTAATTTGTTGCTAATATTCGAGGAGAGTATGTGTTGCAACGGTTAGAGAGATCTGAGAAAACATTGAGGATGTGATACTGCACTGTCTTGAAGTAGAAAGACAGTTCCATTGGAGAATGCAAGCAAGATGATTGTGTAGAATTCTTTTTTTTTTAATAAAATATCTTAATGTAAACTTATAGTTGAGAATTATTTGAAACCATTGAAATGTTTAATAATAATTCTATTTAATTTGTTTTGAGATTAAAACA

Coding sequences of Glyma08g05390

Limit To All Plant Sequences

>Glyma08g05390.1   sequence type=CDS   gene model=Glyma08g05390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAAGAAGAAGAAGAGAGTTTCCTCGAAGGTGTGGTGTTATTACTGCGATCGCGAATTCGACGACGAGAAGATCTTGGTGCAGCATCAGAAAGCCAAGCACTTTAAGTGCCATGTCTGCCACAAGAAGCTCTCTACCGCTGGCGGCATGGCCATCCACGTCCTCCAGGTCCACAAGGAATCCGTCACCAAGGTACCCAACGCAAAACCTGGCAGAGAGAGTACGGATATTGAAATATATGGAATGCAAGGGATTCCACCAGATATCTTGGCTGCTCATTACGGTGAAGAAGAGGATGATGTTCCGTCAAAGGCAGCCAAGGTGGATATTCCACCAACTCAGCTTGTAGGTGGAATGATTCCACCTCCTTTGGGTACAGGATATCCTCCGCGACCAACCTTGCCCACAATGCCACCAATGTATAATCCTGCTGTACCTGTGCCTCCAAATGCTTGGATGGTTCCACCTCGACCTCAGCCATGGTTTTCACAGCCTCCAGCTGTTTCAGTTCCTCCTGCTGCCCCATACACACAGCAGCCATTATTTCCTGTGCAGAACGTGAGGCCTCCACTGCCAGCTACTGCTCCTGCGCTCCAAACTCAGATTACTCCTCCTGGATTGCCTACATCTGCACCTGTCCCAGTTTCACAACCTTTATTTCCTGTTGTTGGAAATAACCATACAACTACTCAAAGTTCAACATTTTCTGCTCCACCTCTGCCCTCAAGTGTTCCATCAGTTACTTCAGTGATGTCTGCAAATGTTCCTGTTGATACACATTTGAGCAGCAATTCTTCTGTAACAAGTAGTTATCAGGCTATAGGGATTCCAGGTGGAGCAGCTAGTAACTCACATTCTTATGCTTCTGGTCCAAATACTGGTGGTCCTTCAATTGGGCCTCCCCCAGTAATTGCAAACAAAGCTCCTGCTACTCAGCCTGCCACCAACGAAGTCTACTTAGTTTGGGATGATGAGGCAATGTCCATGGAGGAAAGAAGAATGTCTTTGCCAAAATATCAGGTGCATGATGAAAGTAGCCAGGTAAGTCATACTACCTCTTTAATAGATGGAGTTGCTTTCACATCTAACCAGATGAGTATAGGCTTTATGCTTCCTGTTTTCAGATTCAGTTGTTTACACATTGTTTCCTATTTAAAGAGGTACATTCTGTATAAATTTTTAATTCTTTTTTAA

>Glyma08g05390.2   sequence type=CDS   gene model=Glyma08g05390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAAGAAGAAGAAGAGAGTTTCCTCGAAGGTGTGGTGTTATTACTGCGATCGCGAATTCGACGACGAGAAGATCTTGGTGCAGCATCAGAAAGCCAAGCACTTTAAGTGCCATGTCTGCCACAAGAAGCTCTCTACCGCTGGCGGCATGGCCATCCACGTCCTCCAGGTCCACAAGGAATCCGTCACCAAGGTACCCAACGCAAAACCTGGCAGAGAGAGTACGGATATTGAAATATATGGAATGCAAGGGATTCCACCAGATATCTTGGCTGCTCATTACGGTGAAGAAGAGGATGATGTTCCGTCAAAGGCAGCCAAGGTGGATATTCCACCAACTCAGCTTGTAGGTGGAATGATTCCACCTCCTTTGGGTACAGGATATCCTCCGCGACCAACCTTGCCCACAATGCCACCAATGTATAATCCTGCTGTACCTGTGCCTCCAAATGCTTGGATGGTTCCACCTCGACCTCAGCCATGGTTTTCACAGCCTCCAGCTGTTTCAGTTCCTCCTGCTGCCCCATACACACAGCAGCCATTATTTCCTGTGCAGAACGTGAGGCCTCCACTGCCAGCTACTGCTCCTGCGCTCCAAACTCAGATTACTCCTCCTGGATTGCCTACATCTGCACCTGTCCCAGTTTCACAACCTTTATTTCCTGTTGTTGGAAATAACCATACAACTACTCAAAGTTCAACATTTTCTGCTCCACCTCTGCCCTCAAGTGTTCCATCAGTTACTTCAGTGATGTCTGCAAATGTTCCTGTTGATACACATTTGAGCAGCAATTCTTCTGTAACAAGTAGTTATCAGGCTATAGGGATTCCAGGTGGAGCAGCTAGTAACTCACATTCTTATGCTTCTGGTCCAAATACTGGTGGTCCTTCAATTGGGCCTCCCCCAGTAATTGCAAACAAAGCTCCTGCTACTCAGCCTGCCACCAACGAAGTCTACTTAGTTTGGGATGATGAGGCAATGTCCATGGAGGAAAGAAGAATGTCTTTGCCAAAATATCAGGTGCATGATGAAAGTAGCCAGATGAGCTCCATTGATGCAGCCATAGATAAGAGGATTCTTGAGAGTAGGCTGGCTGGTCGTATGGCATTTTAG

Predicted protein sequences of Glyma08g05390

Limit To All Plant Sequences

>Glyma08g05390.1   sequence type=predicted peptide   gene model=Glyma08g05390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKESVTKVPNAKPGRESTDIEIYGMQGIPPDILAAHYGEEEDDVPSKAAKVDIPPTQLVGGMIPPPLGTGYPPRPTLPTMPPMYNPAVPVPPNAWMVPPRPQPWFSQPPAVSVPPAAPYTQQPLFPVQNVRPPLPATAPALQTQITPPGLPTSAPVPVSQPLFPVVGNNHTTTQSSTFSAPPLPSSVPSVTSVMSANVPVDTHLSSNSSVTSSYQAIGIPGGAASNSHSYASGPNTGGPSIGPPPVIANKAPATQPATNEVYLVWDDEAMSMEERRMSLPKYQVHDESSQVSHTTSLIDGVAFTSNQMSIGFMLPVFRFSCLHIVSYLKRYILYKFLILF*

>Glyma08g05390.2   sequence type=predicted peptide   gene model=Glyma08g05390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKESVTKVPNAKPGRESTDIEIYGMQGIPPDILAAHYGEEEDDVPSKAAKVDIPPTQLVGGMIPPPLGTGYPPRPTLPTMPPMYNPAVPVPPNAWMVPPRPQPWFSQPPAVSVPPAAPYTQQPLFPVQNVRPPLPATAPALQTQITPPGLPTSAPVPVSQPLFPVVGNNHTTTQSSTFSAPPLPSSVPSVTSVMSANVPVDTHLSSNSSVTSSYQAIGIPGGAASNSHSYASGPNTGGPSIGPPPVIANKAPATQPATNEVYLVWDDEAMSMEERRMSLPKYQVHDESSQMSSIDAAIDKRILESRLAGRMAF*

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