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Report for Sequence Feature Glyma08g05370

Feature Type:gene_model
Chromosome:Gm08
Start:3802945
stop:3810122
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g05370
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G01830AT Annotation by Michelle Graham. TAIR10: CHASE domain containing histidine kinase protein | chr2:363332-367429 REVERSE LENGTH=1057 SoyBaseE_val: 0ISS
GO:0000160GO-bp Annotation by Michelle Graham. GO Biological Process: phosphorelay signal transduction system SoyBaseN/AISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0007231GO-bp Annotation by Michelle Graham. GO Biological Process: osmosensory signaling pathway SoyBaseN/AISS
GO:0008272GO-bp Annotation by Michelle Graham. GO Biological Process: sulfate transport SoyBaseN/AISS
GO:0009414GO-bp Annotation by Michelle Graham. GO Biological Process: response to water deprivation SoyBaseN/AISS
GO:0009736GO-bp Annotation by Michelle Graham. GO Biological Process: cytokinin mediated signaling pathway SoyBaseN/AISS
GO:0009744GO-bp Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus SoyBaseN/AISS
GO:0009749GO-bp Annotation by Michelle Graham. GO Biological Process: response to glucose stimulus SoyBaseN/AISS
GO:0009750GO-bp Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus SoyBaseN/AISS
GO:0010029GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of seed germination SoyBaseN/AISS
GO:0010086GO-bp Annotation by Michelle Graham. GO Biological Process: embryonic root morphogenesis SoyBaseN/AISS
GO:0016036GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation SoyBaseN/AISS
GO:0031537GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of anthocyanin metabolic process SoyBaseN/AISS
GO:0033500GO-bp Annotation by Michelle Graham. GO Biological Process: carbohydrate homeostasis SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0048509GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of meristem development SoyBaseN/AISS
GO:0048831GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of shoot development SoyBaseN/AISS
GO:0071329GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to sucrose stimulus SoyBaseN/AISS
GO:0005783GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0000155GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphorelay sensor kinase activity SoyBaseN/AISS
GO:0000156GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphorelay response regulator activity SoyBaseN/AISS
GO:0004673GO-mf Annotation by Michelle Graham. GO Molecular Function: protein histidine kinase activity SoyBaseN/AISS
GO:0004721GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphoprotein phosphatase activity SoyBaseN/AISS
GO:0004871GO-mf Annotation by Michelle Graham. GO Molecular Function: signal transducer activity SoyBaseN/AISS
GO:0005034GO-mf Annotation by Michelle Graham. GO Molecular Function: osmosensor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0009884GO-mf Annotation by Michelle Graham. GO Molecular Function: cytokinin receptor activity SoyBaseN/AISS
GO:0009885GO-mf Annotation by Michelle Graham. GO Molecular Function: transmembrane histidine kinase cytokinin receptor activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
GO:0019899GO-mf Annotation by Michelle Graham. GO Molecular Function: enzyme binding SoyBaseN/AISS
GO:0019901GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase binding SoyBaseN/AISS
GO:0019955GO-mf Annotation by Michelle Graham. GO Molecular Function: cytokine binding SoyBaseN/AISS
GO:0043424GO-mf Annotation by Michelle Graham. GO Molecular Function: protein histidine kinase binding SoyBaseN/AISS
KOG0519 KOG Sensory transduction histidine kinase JGI ISS
PTHR24423Panther TWO COMPONENT SIGNAL TRANSDUCTION PROTEIN-RELATED JGI ISS
PTHR24423:SF37Panther JGI ISS
PF00072PFAM Response regulator receiver domain JGI ISS
PF00512PFAM His Kinase A (phosphoacceptor) domain JGI ISS
PF02518PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JGI ISS
PF03924PFAM CHASE domain JGI ISS
UniRef100_G7LCC3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Histidine kinase n=1 Tax=Medicago truncatula RepID=G7LCC3_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1KQE9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KQE9_SOYBN SoyBaseE_val: 0ISS

Proteins Associated with Glyma08g05370
LocusGene SymbolProtein Name
HK17 root preferential, Histidine Kinase

Expression Patterns of Glyma08g05370
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g05370
ParalogEvidenceComments
Glyma05g34310 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g05370 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g049000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g05370
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g05370
>Glyma08g05370.1   sequence type=CDS   gene model=Glyma08g05370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTCTTGGTTTGAAGATGAAGAGCCTGAGGCACCATCCCATGGCCTTGAAGATACATGAGCAAGCGGGGAGCAAAAGAAAGTACACTTTCATTCAGGCACATAGGGCCTGGCTTCCCAAGTTTTTGATGCTGTGGATCCTTCTCATGGCTCTAATTGGCTGTTTCATCTTTAGTAAAATGGATGCTGACACTAAAGTCAGAAGGAAAGAGGTGCTGGGTAGCCTCTGCGATCAAAGGGCTAGAATGCTGCAAGATCAATTTAGTGTTAGTGTCAACCATGTCCATGCCCTTGCCATCCTTGTTTCAACCTTCCATTACTACAGAACCCCTTCTGCCATTGACCAGGAAACCTTTGCAGAGTATACAGCCAGGACAGCATTTGAACGGCCATTACTCAGTGGGGTAGCCTATGCACAAAGAGTAGTTAACTCAGAGAGGGAAACATTTGAGAAGCAACATGGTTGGGTTATAAAGACAATGGAAAGAGAGCCTTCACTGGTTAGAGATGAGTATGCACCGGTGATATTTGTGCAAGAAACTCTCTCTTACCTCGAATCTATTGATATGATGTCCGGGGAGGAGGACCGAGAAAATATTTTGAGGGCTAGGGCCACTGGGAAAGCTGTTCTCACTAGTCCTTTTAGGCTGTTGGGGTCTCATCATCTTGGTGTGGTTTTAACATTTCCTGTTTATAAATCTAAGCTCCCTCCAAAGCCAACAATGGAAGAGCGAATTAAAGCAACTGCAGGATATGTTGGAGGATCCTTTGACGTTGAGTCCCTCGTGGAGAATTTACTTGGTCAACTTGCTGGTCACCAAGCAATTTTGGTGAACGTATATGATATCACAAACTCTACTGACCACTTAATCATGTATGGCAACCAAAACGAAGAAGGTGATATGTCTCTTGTCCATGAAAGTAAGCTTGATTTTGGAGATTCATACAGGAAACATACAATGATATGTAGGTATCACCAGAAGGCACCAACAAATTGGATAGCACTTACCACAGCATTCTTATTCTTTGTAATTCTTTTATTAGTGGGTTATATTTTATATGGTGCTGGAAATCACATTGTCAAAGTAGAGGATGATTTTCATCAAATGGAGGAATTAAAAGTGCGAGCAGAAGCAGCTCATGTTGCCAAGTCACAGTTTCTAGCTACTGTCTCTCATGAAATTAGAACACCCATGAATGGCATTTTAGGAATGCTTGGTCTGCTTCTAAAGACAGAATTGAGTTCAACTCAACGTGATTATGCCCAGACTGCTCAAGCATGTGGGAAGGCTCTGATAGCATTAATAAATGAGGTACTTGACCGGGCTAAAATTGAAGCTGGCAAGTTAGAGCTGGAAGCTGTTCCATTTGACATTCGTTCCATACTTGATGATGTCCTTTCTCTTTTTTCTGAAAAGTCTCGGAACAAAGGTTTAGAGCTGGCGGTGTTTGTTTCTGATAAAGTTCCAGATATTGTTATGGGAGATCCTGGGAGATTCAGACAAATAGTAACAAATCTTGTTGGCAACTCTGTTAAATTCACTGAGCGAGGACATGTATTTGTGAAAGTCCATCTATCTGAAAATAGAATGTCCACGATGAATGGAAAAATTGAGAAATTTCTAAACGGAGGATTGGACGAACCTGTGCATATGTCTGGTGGTTATAATTCCAAAACTTTAAGTGGATATGAAGCAGCTGATGAGCGGAACAGCTGGGACAATTTTAAGCATCTAATTGCCGATGAAGAATTTTTCTATGATGCTTCTGTTAAAAGGGTGGCAAGCGAATCTTATGAGCAAGTCACCTTGATGGTCAGTGTGGAGGACACTGGAATTGGAATTCCTTTCTCAGCCCAAGATAGGATTTTCATGCCTTTCGTGCAGGCAGACAGCTCAACCTCTCGACATTATGGTGGTACTGGCATTGGCTTGAGTATCAGTAAGTGCCTGGTCGAACTAATGGGTGGTGAGATAAGTTTCATAAGCCAACCGCAGGTTGGGAGCACATTTTCATTTACTGCAGATTTTGGAACAATTAAGAAAAATGCAATAACTGACATGAAGAAACATAATTTGGAAGATCTGCCTTCCAATTTTAGAGGGCTTAAAGCCATAGTGGTTGATGGAAAACCTGTTAGAGCAGCAGTGACTAGATACCATCTGAAGAGACTAGGGATACAGGCTAAAGTTGCAAATAGCTTCAATAAGGCTGTTTCTTTATGTGGGAAAAATGGTTGTTTGACCTCGGGATTATTTCAGCCCGATATTATTTTTGTCGAGAAAGATTCATGGGTTTGTGTAGAGGATGGGATCTTCAATGTGTGGCAACTGGACTGGAAACAGAATCGGCATATATTTAAGATACCTCAGATGATACTTCTTGCGACCAACATCGGTAATGATGAATTTGATAAAGCTAAAGCTGCAGGTTTCAGCGATACTGTGATCATGAAGCCCCTAAGAGCTAGCATGGTGGCTGCTTGTCTTCAGCAAGTTCTGGGAACGGGGAAGAAGAGGCAACACGGGAAAGACATGAATCCTAATGGTTCCACTTTTGTAAGAAGCCTTCTTTGCGGGAAAAAAATCTTAGTGGTTGATGACAATGTGGTAAACCGGAGGGTAGCTGCAGGTGCATTAAAAAATTTTGGAGCTGATGTGACGTGTGCAGAAAGTGGCAAAACTGCTCTTGAAATGCTGCAGTTGCCTCACAATTTTGATGCTTGCTTCATGGATATTCAAATGCCAGAAATGGACGGGTTTGAAGCAACTAGGCAAATTCGGATGATGGAGACAAAGGCAAATGAGCAGCAGATGAATGGTGAATGTGGTGAAGGAAATGGATGGAAAGACAAGAAGTACCATATACCTATATTGGCCATGACAGCTGATGTGATTCACGCAACATACGATGAGTGCGTGAAATGTGGGATGGACGGATATGTCTCAAAGCCTTTTGAGGAAGAGAATCTGTATCAAGCAGTTGCAAAGTTTTTCAACCCCAAGCCTACCTCAATACAACAAAATGCCAGAACTGGAAAAGCAACTTAA
Predicted protein sequences of Glyma08g05370
>Glyma08g05370.1   sequence type=predicted peptide   gene model=Glyma08g05370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLGLKMKSLRHHPMALKIHEQAGSKRKYTFIQAHRAWLPKFLMLWILLMALIGCFIFSKMDADTKVRRKEVLGSLCDQRARMLQDQFSVSVNHVHALAILVSTFHYYRTPSAIDQETFAEYTARTAFERPLLSGVAYAQRVVNSERETFEKQHGWVIKTMEREPSLVRDEYAPVIFVQETLSYLESIDMMSGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPKPTMEERIKATAGYVGGSFDVESLVENLLGQLAGHQAILVNVYDITNSTDHLIMYGNQNEEGDMSLVHESKLDFGDSYRKHTMICRYHQKAPTNWIALTTAFLFFVILLLVGYILYGAGNHIVKVEDDFHQMEELKVRAEAAHVAKSQFLATVSHEIRTPMNGILGMLGLLLKTELSSTQRDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDIRSILDDVLSLFSEKSRNKGLELAVFVSDKVPDIVMGDPGRFRQIVTNLVGNSVKFTERGHVFVKVHLSENRMSTMNGKIEKFLNGGLDEPVHMSGGYNSKTLSGYEAADERNSWDNFKHLIADEEFFYDASVKRVASESYEQVTLMVSVEDTGIGIPFSAQDRIFMPFVQADSSTSRHYGGTGIGLSISKCLVELMGGEISFISQPQVGSTFSFTADFGTIKKNAITDMKKHNLEDLPSNFRGLKAIVVDGKPVRAAVTRYHLKRLGIQAKVANSFNKAVSLCGKNGCLTSGLFQPDIIFVEKDSWVCVEDGIFNVWQLDWKQNRHIFKIPQMILLATNIGNDEFDKAKAAGFSDTVIMKPLRASMVAACLQQVLGTGKKRQHGKDMNPNGSTFVRSLLCGKKILVVDDNVVNRRVAAGALKNFGADVTCAESGKTALEMLQLPHNFDACFMDIQMPEMDGFEATRQIRMMETKANEQQMNGECGEGNGWKDKKYHIPILAMTADVIHATYDECVKCGMDGYVSKPFEEENLYQAVAKFFNPKPTSIQQNARTGKAT*






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