Glyma08g05350 - SoyBase

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Report for Sequence Feature Glyma08g05350

Feature Type:	gene_model
Chromosome:	Gm08
Start:	3793845
stop:	3800787
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g05350

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G32730	AT	Annotation by Michelle Graham. TAIR10: 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit \| chr2:13880189-13885464 FORWARD LENGTH=1004	SoyBase	E_val: 0	ISS
GO:0006094	GO-bp	Annotation by Michelle Graham. GO Biological Process: gluconeogenesis	SoyBase	N/A	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0007010	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization	SoyBase	N/A	ISS
GO:0009630	GO-bp	Annotation by Michelle Graham. GO Biological Process: gravitropism	SoyBase	N/A	ISS
GO:0010498	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasomal protein catabolic process	SoyBase	N/A	ISS
GO:0042176	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of protein catabolic process	SoyBase	N/A	ISS
GO:0043161	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0043248	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasome assembly	SoyBase	N/A	ISS
GO:0051788	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to misfolded protein	SoyBase	N/A	ISS
GO:0000502	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: proteasome complex	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0008540	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: proteasome regulatory particle, base subcomplex	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0030234	GO-mf	Annotation by Michelle Graham. GO Molecular Function: enzyme regulator activity	SoyBase	N/A	ISS
KOG2062	KOG	26S proteasome regulatory complex, subunit RPN2/PSMD1	JGI		ISS
PTHR10943	Panther	26S PROTEASOME REGULATORY SUBUNIT	JGI		ISS
PTHR10943:SF2	Panther	26S PROTEASOME REGULATORY SUBUNIT RPN2	JGI		ISS
PF01851	PFAM	Proteasome/cyclosome repeat	JGI		ISS
UniRef100_G7LCC0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 26S proteasome non-ATPase regulatory subunit n=1 Tax=Medicago truncatula RepID=G7LCC0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KQE8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KQE8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g05350

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g05350

Paralog	Evidence	Comments
Glyma05g34320	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g05350 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g048800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g05350

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g05350

Limit To All Plant Sequences

>Glyma08g05350.1   sequence type=CDS   gene model=Glyma08g05350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGACGACTTTGGTGAGCTCCGCGGGTGGGATGCTTGCGATGCTGAACGAGCCACATCTCTCGCTGAAGCTTCACGCTCTCTCCAACCTCAACAACTTGGTCGACACCTTCTGGCCCGAGATCTCCACCAGTCTCCCGAAGATAGAGAGTTTGCATGAAGATGAGGAGTTTGATCAACATCAAAGGCAACTTGCTGCACTTCTTGTATCAAAGGTCTTTTATTACTTGGGTGAACTTAATGATTCGTTATCTTATGCCCTTGGAGCTGGTCCTCTGTTTGATGTCTCAGAGGATTCTGACTATGTGCACACTCTTCTTGCTAAAGCCATAGATGAATATGCTAGCCTTAAGTCTAAGGCAGCAGAGTCAAGTGATGAATCTATCAAAATGGACCCAAGGTTGGAAGCAATTGTGGAGAGGCTGTTGGATAAGTGTATCGTGGATGGGAAATACCAACAAGCTATGGGAACTGCTATTGAATGCAGGAGATTAGACAAACTAGAGGAGGCAATTACAAGGAGTGACAATGTTCAAGGAACTCTATCATATTGCATTTATGTATCTCATTCCTTTGTGAACCTTAGAGAGTACAGACAGGAGGTTCTCCGTCTCCTTGTTAAAGTATTTCAAAAGCTTCCTTCACCAGATTATCTGAGCATTTGCCAATGTCTTATGTTCTTGGATGAGTCAGAGGGTGTTGCAAGCAAACTAGAGAAGCTTTTACGTTCTGAAAACAAAGATGATGCACTTTTGGCATTTCAAATAGCTTTTGATCTGGTAGAGAATGAACACCAAGCTTTTCTTCTGAATGTTAGAGATCGCCTTGCACCACCTAAGTCTCAGCCTTCAGAATCTTCACAGCCAAAACCCAGTGAGACAGCCTCTACTCAAAATGCTAGTGCGAGCGGGCAGGATGATGTTCAAATGGCTGATGATGATTCTGCTCCTATGGTCAATGTGCCAGAGGATCCGATTGAAACCATGTATGCTGAGAGGTTAAACAAAATAAGGGGAATTTTGTCTGGGGAAACTTCAATACAGTTGACTCTGCAGTTCCTTTACAGTCATAACAAATCTGACCTCCTAATTCTAAAGACAATAAAGCAGTCTGTGGAGATGAGGAATAGTGTCTGTCATAGTGCTACAATATATGCCAATGCAATAATGCATGCTGGAACAACTGTGGATACTTTCCTCAGGGAAAATTTGGATTGGTTGAGCAGAGCTACTAATTGGGCCAAATTTAGTGCAACGGCTGGTCTTGGTGTTATCCATAGAGGCCATTTGCAGCAGGGGAGGTCACTGATGGCGCCCTACTTACCTCAGGGTGGGACTGGAGCTGGTGGTAGTCCATACTCAGAAGGTGGTGCTCTCTATGCCCTTGGTCTTATTCATGCTAACCATGGAGAGGGCATCAAACAATTTCTTCGTGATAGCCTGCGCAGTACTACTGTTGAGGTTATACAACATGGTGCATGTTTAGGTCTTGGTTTGGCATCGTTAGGAACTGCTGATGAGGATATTTATGAAGAAATAAAAAATGTTCTCTACACCGATAGTGCTGTTGCTGGCGAGGCTGCTGGTATTAGTATGGGCTTACTCATGGTTGGAACTGGCAGCGAGAAAGCAAATGAGATGCTCACTTATGCCCATGAGACTCAACATGAAAAGATTATTAGGGGGTTAGCATTGGGAATCGCTCTTACAGTTTATGGAAGAGAAGAAGAAGCTGACACTTTGATTGAGCAGATGACTCGGGATCAAGATCCAATATTGCGTTATGGTGGCATGTATGCTTTGGCCTTGGCGTATAGGGGAACAGCAAACAATAAGGCCATTCGCCAGTTACTGCACTTTGCTGTGTCTGATGTGAGTGATGATGTCAGGAGGACTGCAGTTCTAGCATTAGGGTTTGTGTTGTACTCTGATCCAGAGCAGACTCCACGAATTGTTTCCCTCCTATCAGAATCTTACAATCCACATGTTCGATATGGAGCAGCTCTTGCTGTGGGTATTTCCTGTGCGGGTACAGGTCTCAGCGAGGCTATCTCTTTATTGGAGCCTTTGACATCGGATGTTGTTGATTTTGTTCGTCAAGGTGCCCTTATAGCAATGGCTATGGTCATGGTTCAGATCAGTGAAGCTAGTGACTCACGCGTTGGAACATTTAGGCGACAATTGGAGAAAATTATTCTGGACAAGCATGAGGATACCATGAGCAAGATGGGAGCAATTTTGGCATCAGGAATCCTTGATGCTGGTGGCAGAAATGTGACCATAAGGTTACTTTCTAAGACAAAACATGATAAAATTACTGCAGTGGTTGGTCTTGCAGTTTTCAGCCAGTTTTGGTATTGGTACCCTCTTATCTATTTTATAAGCCTGTCCTTTTCGCCTACGGCTTTTATTGGGTTGAACTATGATCTGAAATCTCCAAAGTTTGAGTTCTTGTCACATGCAAAGCCTTCACTTTTTGAATACCCCAAGCCTACTACTGTTCCCACCACTACTTCAACCGTGAAACTTCCCACTGCTGTTCTGTCAACCTCAGCTAAGGCTAAAGCTAGGGCTAAGAAAGCTGAAGAACAGAAGGCTAATGCTGAAATTTCATCTGCTCCCGACTCTGCATCAGCTGTCCCAAGTGGTGGAAAAGGAAAGTCGTCTGGTGAGAAGGATGGAGACTCAATGCAGGTTGATAGCCCAACAACGGAGAAGAAATCAGAGCCTGAGCCATCGTTTGAGATTCTGACTAATCCTGCAAGGGTGGTTCCTGCACAGGAGAAGTTTATTAAATTTTTGCAGGACAGCAGATATGTTCCAGTTAAGTTGGCACCATCAGGATTTGTGCTTCTCAAAGACTTGCGTCCTACTGAGCCAGAAGTGCTTGCTCTCACTGACACACCTTCATCTACCACTTCGGCTGCTGGTGGGTCAGCAACAGGATTGCAGAGTTCTTCATCAGCCATGGCTGTGGATGAGGAACCTCAGCCTCCTCAACCATTTGAATACACCTCATGA

Predicted protein sequences of Glyma08g05350

Limit To All Plant Sequences

>Glyma08g05350.1   sequence type=predicted peptide   gene model=Glyma08g05350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATTLVSSAGGMLAMLNEPHLSLKLHALSNLNNLVDTFWPEISTSLPKIESLHEDEEFDQHQRQLAALLVSKVFYYLGELNDSLSYALGAGPLFDVSEDSDYVHTLLAKAIDEYASLKSKAAESSDESIKMDPRLEAIVERLLDKCIVDGKYQQAMGTAIECRRLDKLEEAITRSDNVQGTLSYCIYVSHSFVNLREYRQEVLRLLVKVFQKLPSPDYLSICQCLMFLDESEGVASKLEKLLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDRLAPPKSQPSESSQPKPSETASTQNASASGQDDVQMADDDSAPMVNVPEDPIETMYAERLNKIRGILSGETSIQLTLQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATNWAKFSATAGLGVIHRGHLQQGRSLMAPYLPQGGTGAGGSPYSEGGALYALGLIHANHGEGIKQFLRDSLRSTTVEVIQHGACLGLGLASLGTADEDIYEEIKNVLYTDSAVAGEAAGISMGLLMVGTGSEKANEMLTYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYRGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSDPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQISEASDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKITAVVGLAVFSQFWYWYPLIYFISLSFSPTAFIGLNYDLKSPKFEFLSHAKPSLFEYPKPTTVPTTTSTVKLPTAVLSTSAKAKARAKKAEEQKANAEISSAPDSASAVPSGGKGKSSGEKDGDSMQVDSPTTEKKSEPEPSFEILTNPARVVPAQEKFIKFLQDSRYVPVKLAPSGFVLLKDLRPTEPEVLALTDTPSSTTSAAGGSATGLQSSSSAMAVDEEPQPPQPFEYTS*

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