Glyma08g05330 - SoyBase

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Report for Sequence Feature Glyma08g05330

Feature Type:	gene_model
Chromosome:	Gm08
Start:	3780181
stop:	3783409
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g05330

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G73600	AT	Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr1:27670825-27673400 FORWARD LENGTH=490	SoyBase	E_val: 6.00E-70	ISS
GO:0000023	GO-bp	Annotation by Michelle Graham. GO Biological Process: maltose metabolic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0019252	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0000234	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphoethanolamine N-methyltransferase activity	SoyBase	N/A	ISS
GO:0008168	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity	SoyBase	N/A	ISS
PTHR10108	Panther	METHYLTRANSFERASE	JGI		ISS
PTHR10108:SF328	Panther	SUBFAMILY NOT NAMED	JGI		ISS
UniRef100_G7LE69	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phosphoethanolamine N-methyltransferase n=1 Tax=Medicago truncatula RepID=G7LE69_MEDTR	SoyBase	E_val: 2.00E-73	ISS
UniRef100_I1KQE6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KQE6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g05330

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g05330 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g048600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g05330

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g05330

Limit To All Plant Sequences

>Glyma08g05330.1   sequence type=CDS   gene model=Glyma08g05330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATCTCTCAGACATTGAGGTTCAAAAATTAGCTGAAAGGATGCTCAGATGGTTAAAAGATGCTGGATATATATTCTTTAGAGAATCTTGTTTCCACCAATCTGGAGATTCAAAGAGAAAATACAACCCTACTCACTACAGGGAACCCAGATTTTACACAAAGGTATTTAAAGAGTGCCATATGAGCGATAATACTGGGAGTTCCTGTAAATGCATTGGAGCTTATGTTCGAAACAAGAAGAACCAAAACCAGATTTGCTGGATATGGCAGAAAGATAGAGTTGAATACAGCTACAAGAGTATTTTACGGTCTGAACGGATGTATGGCCCAGGCTTTGTGAGCACTGGTGGACTTGAAACAACAAAGGAATTTGTGACAAAACTGGGACTAAAGCCTGGTCAGAAAGTTCTGGATGTTTGGTTGTGGTGGTTTTTAGTAGTGTCATGCTTTATAATCATTTTACAAGTGGTTGAAGCCTGGAGGAAAAATTCTAAAGTACAGATTACTGCAAAATACATTAAAAAAGGAGGATATTATCTCCATTACATTAAAGCGTATAGGCAGATGCTTGAGGATGCTGGATTTGATGATATCATTGCTGAGAGTCGAACTGATCAGTTTGTGAAAATGCTACAGCAGGAGTTAGATGCCCTTGAGAACAAGAAGGACGATTTTATTCGTGACTTCAGCAAGATTACAATTAGATTGTGGAAAGATGGAAGGCAAAGCATATATACCTGGGGTGCGTATAGAGAGCAGATGTGGGGCTTGTTCATTGCCAAGAAAAATTGA

Predicted protein sequences of Glyma08g05330

Limit To All Plant Sequences

>Glyma08g05330.1   sequence type=predicted peptide   gene model=Glyma08g05330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYLSDIEVQKLAERMLRWLKDAGYIFFRESCFHQSGDSKRKYNPTHYREPRFYTKVFKECHMSDNTGSSCKCIGAYVRNKKNQNQICWIWQKDRVEYSYKSILRSERMYGPGFVSTGGLETTKEFVTKLGLKPGQKVLDVWLWWFLVVSCFIIILQVVEAWRKNSKVQITAKYIKKGGYYLHYIKAYRQMLEDAGFDDIIAESRTDQFVKMLQQELDALENKKDDFIRDFSKITIRLWKDGRQSIYTWGAYREQMWGLFIAKKN*

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