Report for Sequence Feature Glyma08g05320
Feature Type: gene_model
Chromosome: Gm08
Start: 3762260
stop: 3779417
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g05320
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G24706 AT
Annotation by Michelle Graham. TAIR10: THO2 | chr1:8742210-8755243 FORWARD LENGTH=1804
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG1874
KOG
KEKE-like motif-containing transcription regulator (Rlr1)/suppressor of sin4
JGI ISS
PTHR21597 Panther
THO2 PROTEIN
JGI ISS
PF11262 PFAM
Transcription factor/nuclear export subunit protein 2
JGI ISS
PF11732 PFAM
Transcription- and export-related complex subunit
JGI ISS
UniRef100_B9SNG7 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Tho2 protein, putative n=1 Tax=Ricinus communis RepID=B9SNG7_RICCO
SoyBase E_val: 0 ISS
UniRef100_UPI0002337F58 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0002337F58 related cluster n=1 Tax=unknown RepID=UPI0002337F58
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g05320
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma08g05320
Paralog Evidence Comments
Glyma05g34330 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g05320 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g048400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g05320
Coding sequences of Glyma08g05320
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g05320.1 sequence type=CDS gene model=Glyma08g05320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCTCTTCCACCCATAGAGTGTGTATACGTAACTGAAGAATGTATTCGGGAATGGAGGAGTGGCAACCCTGCCCTCAAGGTTTCCGAAGAATTTTTGGGGGAGGCTGAGTTGATCAAAATTAAGGCTCAGGAATTGAAGGGTAAAGAGGTCAGAGTTAATACCCGAATTCTCTATCAGCAAACCAAATTCAACCTTCTCAGAGAAGAGAGTGAGGGCTATGCAAAGCTGGTTACTCTTCTTTGTCGGGACTCTGAAGCACCTACTCAAAAATCATCTGCAGCAACAATTGGCATTATTAAGTCATTAATTGGCCATTTTGATTTGGATCCAAATCGCGTTTTCGATATTGTTCTCGAGTGTTTTGAACTGCAGCCTGATGATGATGTGTTTATAGAATTGATTCCTATTTTTCCAAAGTCTCATGCTTCACAGATTCTTGGATTTAAGTTTCAATATTATCAACGCATGGAAGTCAACAGTCCTGTTCCATTTGGGCTCTATAGACTTACAGCCTTGCTGGTGAAGCAAGATTTTATTGATCTTGATAGCATATATGCTCATCTACTTCCCAGGGATGATGAGGCATTTGAGCATTACAATACTTTCTCTTCCAAGCGCCTTGATGAGGCTAATAAAATTGGAAGAATAAACCTTGCTGCAACTGGAAAAGATCTAATGGATGATGAGAAACAGGGGGATGTCACTATAGATCTCTTTGCTGCTATAGACATGGAAACAGACGCGATTGAAGAGCGAACAACTGAGCTTCAGAGCAGTCAGACTTTGGGCTTGCTTACTGGCTTTCTTTCAGTGGATGATTGGTATCATGCACATCTACTATTTGAATGCCTTTCACCACTCAATGCAGTGGAACATATTCAAATATGTGACAGTTTGTTTAGGCTTATCAAGAAGTCAATTTCTTCAGCATATGATGTTATTCGTCAGACACATCTTCAAAATCCTGGATCGTCCACGGGAGGCAGCACTGATGTTATGGATGTAGATAACTCTTCAGGATACAGTTCTTTCATAGATCTTCCAAAGGAACTTTTTCAGATGCTTGCTTGTACTGGACCTTATCTCTATCGTGATACTGTACTGTTGCAGAAGGTTTGTAGGGTGTTGAGAGGTTATTACCTTTCTGCTCTTGAGCTTGTAAGTCATGGCAATGGTGTCTTGAATCCTCAATTACAAGTTCCTGGAAATCCTCACCTACATCTTAAGGAGGCAAGGCTAAGGGTGGAGGATGCTTTAGGAGCATGTCTACTACCATCTCTGCAGTTAATTCCTGCCAATCCAGCTGTTGGCCAGGAAATTTGGGAACTGTTGAGTCTTCTTCCTTATGAGGTGCGATATCGTTTGTATGGTGAATGGGAAAAAGATGATGAGCGCATTCCTATGCTCTTATCTGCAAGACAAACTGCCAAGTTGGACACTAGACGTATTTTGAAACGGCTGGCAAAGGAAAATTTGAAGCAGCTGGGTCGGATGGTTGCAAAGTTAGCTCATGCCAACCCTATGACTGTCCTTCGAACAATTGTTCATCAGATTGAGGCTTATAGAGACATGATTACTCCTGTAGTGGATGCATTTAAGTACTTAACTCAGCTTGAGTATGATATATTGGAATATGTTGTGATTGAGCGTTTGGCGCTTGGTGGACGTGATAAGTTAAAGGATGATGGCCTTAATTTGTCAGATTGGCTTCAATCTCTTGCTTCATTTTGGGGCCACCTGTGTAAGAAGTACCCATCAATGGAATTACGGGGCCTTTTCCAGTATCTTGTGAATCAGTTAAAAAAGGGGCAGGGAATTGAGCTTGTTCTACTGCAGGAGCTTATTCAACAAATGGCTAATGTCCAGTACACGGAGAACTTGACTGAGGAACAGTTGGATGCAATGGCAGGGAGTGAGACTCTCAGATATCAAGCAACATCTTTTGGTGTAACTCGGAATAATAAGGCATTGATAAAGTCAACTAGCAGACTTCGTGATGCATTACTTCCAAAAGATGAACCAAAGTTGGCGATCCCCCTGTTACTGCTTATTGCTCAACATCGTTCTTTGGTTGTTATCAATGCAGATGCACCCTACATTAAGATGGTTAGTGAGCAGTTTGATAGATGTCACGGAACTCTCCTTCAATATGTGGAATTTCTTTGCAGTGCAGTCACTCCAGCATCAAATTATGGCATTCTTATTCCCTCCCTCAATGACCTGGTCCACCTTTACCACCTGGACCCTGAGGTTGCTTTCTTGATATATCGCCCTGTAATGAGGCTTTTCAAGTCTCCCGGGAATCCTGATGTTTGCTGGCCCTTGGATGATAAAAATGCTGCAAGTGATGCATCTATGAACTTTGAGTCTGATCCTTTGGATCATTCTGCTAGTATGGTTCTAAATCTTGGCTCTGCTCAAAATCCTATAAGTTGGTCGTATCTTCTTGATACTGTTAAAACCATGTTGCCTTCGAAAGCATGGAATAGCTTATCTCCTGATCTTTATGCTACGTTTTGGGGTCTTACATTATATGATCTGTATGTTCCAAAAAATCGTTATGAGTCAGAAATAGCCAAATTGCATGCTAATCTTAAATCTTTGGAGGAGCTTTCTGACAATTCAAGCTCAGCAATCACGAAGAGGAAGAAAGAAAAAGAAAGAATTCAAGAATCTCTTGATCGTCTGATCAGTGAACTGCATAAACATGAAGAGAATGTTGCATCTGTTCGTAGACGGCTTTCTCATGAAAAAGACAAATGGTTAAGTTCCTGTCCTGACACCTTAAAGATCAACATGGAGTTTCTTCAGCGCTGTATATTTCCACGCTGTACTTTCAGTATGCCCGATGCAGTTTATTGTGCTATGTTCGTACACACGCTTCATTCCCTTGGAACCCCCTTTTTTAACACAGTCAACCACATAGATGTTCTGATTTGTAAGACCCTACAACCAATGATATGCTGCTGCACTGAATACGAGGCAGGCAGGCTTGGCAGGTTTCTGTATGAGACTTTGAAGATTGCTTACTATTGGAAGAGTGATGAATCTATTTATGAACGTGAGTGTGGAAACATGCCTGGCTTCGCTGTTTATTATAGATATCCAAATAGTCAGCGAGTTACATATGGGCAGTTCATTAAGGTACACTGGAAGTGGAGTCAAAGAATCACTCGTTTACTAATTCAGTGTCTAGAATCTACTGAGTACATGGAAATTAGAAATGCTCTTATAATGTTGACAAAAATTTCTAGTGTTTTCCCTGTTACTCGGAAGAGTGGGATCAACCTTGAAAAGCGGGTAGCTAAGATTAAAAGTGATGAAAGAGAGGATCTTAAGGTGTTGGCGACTGGTGTTGCAGCAGCATTGGCTGCTAGGAAGCCTTCTTGGGTTACTGATGAAGAATTTGGTATGGGTTATCTTGAGTTGAAACCTGCACCATCTGTGACTAAATCTTCAGCTGGAAACTCAGCAACTGTACAAAGTGGGATAAATCTCAATGTTTCACAAACTGAATCTGCCAGTGGAAAACATGTGGACTCTGGAAACATAGTCAAAGATCAGGCAATGAGAACAAAAACTGCAGATGGCAGGTCTGAGAGAACTGAAAGCATTACAGTGACAAAATCTGATACTGGCCACATAAAACTCAAGAGTAGTTCAATGGTGAATGGATTGGATGCTCAATCATCCTTGGCCCCGTCTTCTGTACAATCTGGGACGTCAAAATCTATGGAAAACCCAAAGCAAGTGGAAGAATCCATAAATAGAGCATCAGATGAACATGGGACAAGAACTACTGAGTTAAGAACTTCGGCTAAACGTTCGGTGCCTGCTGGTTCACTATCAAAGCCCTCAAAACAAGATCCTGTAAAAGAGGATGGTAGATCTGGAAAACCTGTTGCTAGAACTTCTGGTTCCTCGAGCAGTGACAAGGAACTACAAACCCATGCATTGGAGGGAAGATACACTGGAACTACCAATGTACCTTCTTCAAATGGTAACACCATCTCAGGTTCTACAAAAGGTTCAAATCCACCAGTCAAGATTTCATTGGATGGCCCTGGTAATGAATCCAAGGCAGAGGTTGGAGTTGCCAAGTCTTCTGATATTAGAGCTTCTATGGTGAAGGATGATGGAAATGATATTACTGACAACCCAAGAGGAGCCTCTTCTCGCGTAGTTCATTCCCCTAGGTATGAAAACACAGGAGTCACTTCAAAGTCTAATGATAAAGTTCAGAAGAGAGCTAGTTCTGCTGAAGAACCAGACAGACTAGGTAAACGACGGAAAGGGGATGTGGAGCTAAGAGATTTTGAAACTGAAGTTAGATTCTCTGAAAGAGAGAAGATGATGGATCCTAGATTTGCTGATGACAAATCGGGACCAGAGGAACATGGTCTGTACAGGGCAGGTGATAAGCCATTGGAAAGGGCAAAAGACAAAGGCAACGAAAGATATGAAAGGGATCACAGGGAAAGAATGGACCGTCTGGATAAGTCTCGTGGTGATGACTTTGTTGCAGAAAAACCTAGGGATAGGTCAATTGAAAGATATGGAAGAGAACGATCTGTTGAGAGAATGCAAGAGAGGGGTAGTGATAGGAGTTTTAATAGACTCCCTGAGAAAGCTAAGGATGAAAGAAACAAGGATGATAGAAATAAATTACGATACAATGATGCATCAGTAGAAAAATCTCATGGTGATGATCGCTTCCATGGTCAAAGCTTGCCTCCACCACCCCCTTTACCTCCTAATGTGGTTCCTCAATCTGTAGGAGCTGGTAGGCGTGATGAAGATGTTGATAGAAGGTATGGAGCTACAAGGCACTCTCAGAGACTTTCTCCAAGGCATGAAGAAAAAGAACGGAGACGGTCTGAAGAGACTGTGGTTTCTCAGGATGATGCCAAACGCCGAAAAGAAGACGATTTTCGAGATCGAAAACGTGAGGAAATTAAGGTGGAAGAGAGGGAGCGGGAAAGAGAGAAAGCAAACATTCTGAAGGAAGAGTTGGATTTAAATGCCGCATCCAAGAGACGTAAACCCAAGAGGGAGCATTTACCAACTGGTGAACCTGGTGAGTACTCACCTGTGGCCCATCCACCTTCTTCCGCTGGTATTGGCATGTCACTAGCATATGATGGAAGGGATAGAGGAGACAGAAAGGGACCCATCATGCAGCATCCAAGTTACGTAGATGAATCAAGTCTCAGGATCCACGGTAAAGAGGTGGCCAGCAAGTTGAATCGCCGTGATTCAGATCCCTTGTATGACCGTGAATGGGAGGATGAGAAGAGACAAAGAGCTGATCAGAAGCGAAGGCACCGAAAGTAA
Predicted protein sequences of Glyma08g05320
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g05320.1 sequence type=predicted peptide gene model=Glyma08g05320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSLPPIECVYVTEECIREWRSGNPALKVSEEFLGEAELIKIKAQELKGKEVRVNTRILYQQTKFNLLREESEGYAKLVTLLCRDSEAPTQKSSAATIGIIKSLIGHFDLDPNRVFDIVLECFELQPDDDVFIELIPIFPKSHASQILGFKFQYYQRMEVNSPVPFGLYRLTALLVKQDFIDLDSIYAHLLPRDDEAFEHYNTFSSKRLDEANKIGRINLAATGKDLMDDEKQGDVTIDLFAAIDMETDAIEERTTELQSSQTLGLLTGFLSVDDWYHAHLLFECLSPLNAVEHIQICDSLFRLIKKSISSAYDVIRQTHLQNPGSSTGGSTDVMDVDNSSGYSSFIDLPKELFQMLACTGPYLYRDTVLLQKVCRVLRGYYLSALELVSHGNGVLNPQLQVPGNPHLHLKEARLRVEDALGACLLPSLQLIPANPAVGQEIWELLSLLPYEVRYRLYGEWEKDDERIPMLLSARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHANPMTVLRTIVHQIEAYRDMITPVVDAFKYLTQLEYDILEYVVIERLALGGRDKLKDDGLNLSDWLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKKGQGIELVLLQELIQQMANVQYTENLTEEQLDAMAGSETLRYQATSFGVTRNNKALIKSTSRLRDALLPKDEPKLAIPLLLLIAQHRSLVVINADAPYIKMVSEQFDRCHGTLLQYVEFLCSAVTPASNYGILIPSLNDLVHLYHLDPEVAFLIYRPVMRLFKSPGNPDVCWPLDDKNAASDASMNFESDPLDHSASMVLNLGSAQNPISWSYLLDTVKTMLPSKAWNSLSPDLYATFWGLTLYDLYVPKNRYESEIAKLHANLKSLEELSDNSSSAITKRKKEKERIQESLDRLISELHKHEENVASVRRRLSHEKDKWLSSCPDTLKINMEFLQRCIFPRCTFSMPDAVYCAMFVHTLHSLGTPFFNTVNHIDVLICKTLQPMICCCTEYEAGRLGRFLYETLKIAYYWKSDESIYERECGNMPGFAVYYRYPNSQRVTYGQFIKVHWKWSQRITRLLIQCLESTEYMEIRNALIMLTKISSVFPVTRKSGINLEKRVAKIKSDEREDLKVLATGVAAALAARKPSWVTDEEFGMGYLELKPAPSVTKSSAGNSATVQSGINLNVSQTESASGKHVDSGNIVKDQAMRTKTADGRSERTESITVTKSDTGHIKLKSSSMVNGLDAQSSLAPSSVQSGTSKSMENPKQVEESINRASDEHGTRTTELRTSAKRSVPAGSLSKPSKQDPVKEDGRSGKPVARTSGSSSSDKELQTHALEGRYTGTTNVPSSNGNTISGSTKGSNPPVKISLDGPGNESKAEVGVAKSSDIRASMVKDDGNDITDNPRGASSRVVHSPRYENTGVTSKSNDKVQKRASSAEEPDRLGKRRKGDVELRDFETEVRFSEREKMMDPRFADDKSGPEEHGLYRAGDKPLERAKDKGNERYERDHRERMDRLDKSRGDDFVAEKPRDRSIERYGRERSVERMQERGSDRSFNRLPEKAKDERNKDDRNKLRYNDASVEKSHGDDRFHGQSLPPPPPLPPNVVPQSVGAGRRDEDVDRRYGATRHSQRLSPRHEEKERRRSEETVVSQDDAKRRKEDDFRDRKREEIKVEEREREREKANILKEELDLNAASKRRKPKREHLPTGEPGEYSPVAHPPSSAGIGMSLAYDGRDRGDRKGPIMQHPSYVDESSLRIHGKEVASKLNRRDSDPLYDREWEDEKRQRADQKRRHRK*