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Report for Sequence Feature Glyma08g05320

Feature Type:gene_model
Chromosome:Gm08
Start:3762260
stop:3779417
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G24706AT Annotation by Michelle Graham. TAIR10: THO2 | chr1:8742210-8755243 FORWARD LENGTH=1804 SoyBaseE_val: 0ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG1874 KOG KEKE-like motif-containing transcription regulator (Rlr1)/suppressor of sin4 JGI ISS
PTHR21597Panther THO2 PROTEIN JGI ISS
PF11262PFAM Transcription factor/nuclear export subunit protein 2 JGI ISS
PF11732PFAM Transcription- and export-related complex subunit JGI ISS
UniRef100_B9SNG7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Tho2 protein, putative n=1 Tax=Ricinus communis RepID=B9SNG7_RICCO SoyBaseE_val: 0ISS
UniRef100_UPI0002337F58UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002337F58 related cluster n=1 Tax=unknown RepID=UPI0002337F58 SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma05g34330 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g048400 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma08g05320.1   sequence type=CDS   gene model=Glyma08g05320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCTTCCACCCATAGAGTGTGTATACGTAACTGAAGAATGTATTCGGGAATGGAGGAGTGGCAACCCTGCCCTCAAGGTTTCCGAAGAATTTTTGGGGGAGGCTGAGTTGATCAAAATTAAGGCTCAGGAATTGAAGGGTAAAGAGGTCAGAGTTAATACCCGAATTCTCTATCAGCAAACCAAATTCAACCTTCTCAGAGAAGAGAGTGAGGGCTATGCAAAGCTGGTTACTCTTCTTTGTCGGGACTCTGAAGCACCTACTCAAAAATCATCTGCAGCAACAATTGGCATTATTAAGTCATTAATTGGCCATTTTGATTTGGATCCAAATCGCGTTTTCGATATTGTTCTCGAGTGTTTTGAACTGCAGCCTGATGATGATGTGTTTATAGAATTGATTCCTATTTTTCCAAAGTCTCATGCTTCACAGATTCTTGGATTTAAGTTTCAATATTATCAACGCATGGAAGTCAACAGTCCTGTTCCATTTGGGCTCTATAGACTTACAGCCTTGCTGGTGAAGCAAGATTTTATTGATCTTGATAGCATATATGCTCATCTACTTCCCAGGGATGATGAGGCATTTGAGCATTACAATACTTTCTCTTCCAAGCGCCTTGATGAGGCTAATAAAATTGGAAGAATAAACCTTGCTGCAACTGGAAAAGATCTAATGGATGATGAGAAACAGGGGGATGTCACTATAGATCTCTTTGCTGCTATAGACATGGAAACAGACGCGATTGAAGAGCGAACAACTGAGCTTCAGAGCAGTCAGACTTTGGGCTTGCTTACTGGCTTTCTTTCAGTGGATGATTGGTATCATGCACATCTACTATTTGAATGCCTTTCACCACTCAATGCAGTGGAACATATTCAAATATGTGACAGTTTGTTTAGGCTTATCAAGAAGTCAATTTCTTCAGCATATGATGTTATTCGTCAGACACATCTTCAAAATCCTGGATCGTCCACGGGAGGCAGCACTGATGTTATGGATGTAGATAACTCTTCAGGATACAGTTCTTTCATAGATCTTCCAAAGGAACTTTTTCAGATGCTTGCTTGTACTGGACCTTATCTCTATCGTGATACTGTACTGTTGCAGAAGGTTTGTAGGGTGTTGAGAGGTTATTACCTTTCTGCTCTTGAGCTTGTAAGTCATGGCAATGGTGTCTTGAATCCTCAATTACAAGTTCCTGGAAATCCTCACCTACATCTTAAGGAGGCAAGGCTAAGGGTGGAGGATGCTTTAGGAGCATGTCTACTACCATCTCTGCAGTTAATTCCTGCCAATCCAGCTGTTGGCCAGGAAATTTGGGAACTGTTGAGTCTTCTTCCTTATGAGGTGCGATATCGTTTGTATGGTGAATGGGAAAAAGATGATGAGCGCATTCCTATGCTCTTATCTGCAAGACAAACTGCCAAGTTGGACACTAGACGTATTTTGAAACGGCTGGCAAAGGAAAATTTGAAGCAGCTGGGTCGGATGGTTGCAAAGTTAGCTCATGCCAACCCTATGACTGTCCTTCGAACAATTGTTCATCAGATTGAGGCTTATAGAGACATGATTACTCCTGTAGTGGATGCATTTAAGTACTTAACTCAGCTTGAGTATGATATATTGGAATATGTTGTGATTGAGCGTTTGGCGCTTGGTGGACGTGATAAGTTAAAGGATGATGGCCTTAATTTGTCAGATTGGCTTCAATCTCTTGCTTCATTTTGGGGCCACCTGTGTAAGAAGTACCCATCAATGGAATTACGGGGCCTTTTCCAGTATCTTGTGAATCAGTTAAAAAAGGGGCAGGGAATTGAGCTTGTTCTACTGCAGGAGCTTATTCAACAAATGGCTAATGTCCAGTACACGGAGAACTTGACTGAGGAACAGTTGGATGCAATGGCAGGGAGTGAGACTCTCAGATATCAAGCAACATCTTTTGGTGTAACTCGGAATAATAAGGCATTGATAAAGTCAACTAGCAGACTTCGTGATGCATTACTTCCAAAAGATGAACCAAAGTTGGCGATCCCCCTGTTACTGCTTATTGCTCAACATCGTTCTTTGGTTGTTATCAATGCAGATGCACCCTACATTAAGATGGTTAGTGAGCAGTTTGATAGATGTCACGGAACTCTCCTTCAATATGTGGAATTTCTTTGCAGTGCAGTCACTCCAGCATCAAATTATGGCATTCTTATTCCCTCCCTCAATGACCTGGTCCACCTTTACCACCTGGACCCTGAGGTTGCTTTCTTGATATATCGCCCTGTAATGAGGCTTTTCAAGTCTCCCGGGAATCCTGATGTTTGCTGGCCCTTGGATGATAAAAATGCTGCAAGTGATGCATCTATGAACTTTGAGTCTGATCCTTTGGATCATTCTGCTAGTATGGTTCTAAATCTTGGCTCTGCTCAAAATCCTATAAGTTGGTCGTATCTTCTTGATACTGTTAAAACCATGTTGCCTTCGAAAGCATGGAATAGCTTATCTCCTGATCTTTATGCTACGTTTTGGGGTCTTACATTATATGATCTGTATGTTCCAAAAAATCGTTATGAGTCAGAAATAGCCAAATTGCATGCTAATCTTAAATCTTTGGAGGAGCTTTCTGACAATTCAAGCTCAGCAATCACGAAGAGGAAGAAAGAAAAAGAAAGAATTCAAGAATCTCTTGATCGTCTGATCAGTGAACTGCATAAACATGAAGAGAATGTTGCATCTGTTCGTAGACGGCTTTCTCATGAAAAAGACAAATGGTTAAGTTCCTGTCCTGACACCTTAAAGATCAACATGGAGTTTCTTCAGCGCTGTATATTTCCACGCTGTACTTTCAGTATGCCCGATGCAGTTTATTGTGCTATGTTCGTACACACGCTTCATTCCCTTGGAACCCCCTTTTTTAACACAGTCAACCACATAGATGTTCTGATTTGTAAGACCCTACAACCAATGATATGCTGCTGCACTGAATACGAGGCAGGCAGGCTTGGCAGGTTTCTGTATGAGACTTTGAAGATTGCTTACTATTGGAAGAGTGATGAATCTATTTATGAACGTGAGTGTGGAAACATGCCTGGCTTCGCTGTTTATTATAGATATCCAAATAGTCAGCGAGTTACATATGGGCAGTTCATTAAGGTACACTGGAAGTGGAGTCAAAGAATCACTCGTTTACTAATTCAGTGTCTAGAATCTACTGAGTACATGGAAATTAGAAATGCTCTTATAATGTTGACAAAAATTTCTAGTGTTTTCCCTGTTACTCGGAAGAGTGGGATCAACCTTGAAAAGCGGGTAGCTAAGATTAAAAGTGATGAAAGAGAGGATCTTAAGGTGTTGGCGACTGGTGTTGCAGCAGCATTGGCTGCTAGGAAGCCTTCTTGGGTTACTGATGAAGAATTTGGTATGGGTTATCTTGAGTTGAAACCTGCACCATCTGTGACTAAATCTTCAGCTGGAAACTCAGCAACTGTACAAAGTGGGATAAATCTCAATGTTTCACAAACTGAATCTGCCAGTGGAAAACATGTGGACTCTGGAAACATAGTCAAAGATCAGGCAATGAGAACAAAAACTGCAGATGGCAGGTCTGAGAGAACTGAAAGCATTACAGTGACAAAATCTGATACTGGCCACATAAAACTCAAGAGTAGTTCAATGGTGAATGGATTGGATGCTCAATCATCCTTGGCCCCGTCTTCTGTACAATCTGGGACGTCAAAATCTATGGAAAACCCAAAGCAAGTGGAAGAATCCATAAATAGAGCATCAGATGAACATGGGACAAGAACTACTGAGTTAAGAACTTCGGCTAAACGTTCGGTGCCTGCTGGTTCACTATCAAAGCCCTCAAAACAAGATCCTGTAAAAGAGGATGGTAGATCTGGAAAACCTGTTGCTAGAACTTCTGGTTCCTCGAGCAGTGACAAGGAACTACAAACCCATGCATTGGAGGGAAGATACACTGGAACTACCAATGTACCTTCTTCAAATGGTAACACCATCTCAGGTTCTACAAAAGGTTCAAATCCACCAGTCAAGATTTCATTGGATGGCCCTGGTAATGAATCCAAGGCAGAGGTTGGAGTTGCCAAGTCTTCTGATATTAGAGCTTCTATGGTGAAGGATGATGGAAATGATATTACTGACAACCCAAGAGGAGCCTCTTCTCGCGTAGTTCATTCCCCTAGGTATGAAAACACAGGAGTCACTTCAAAGTCTAATGATAAAGTTCAGAAGAGAGCTAGTTCTGCTGAAGAACCAGACAGACTAGGTAAACGACGGAAAGGGGATGTGGAGCTAAGAGATTTTGAAACTGAAGTTAGATTCTCTGAAAGAGAGAAGATGATGGATCCTAGATTTGCTGATGACAAATCGGGACCAGAGGAACATGGTCTGTACAGGGCAGGTGATAAGCCATTGGAAAGGGCAAAAGACAAAGGCAACGAAAGATATGAAAGGGATCACAGGGAAAGAATGGACCGTCTGGATAAGTCTCGTGGTGATGACTTTGTTGCAGAAAAACCTAGGGATAGGTCAATTGAAAGATATGGAAGAGAACGATCTGTTGAGAGAATGCAAGAGAGGGGTAGTGATAGGAGTTTTAATAGACTCCCTGAGAAAGCTAAGGATGAAAGAAACAAGGATGATAGAAATAAATTACGATACAATGATGCATCAGTAGAAAAATCTCATGGTGATGATCGCTTCCATGGTCAAAGCTTGCCTCCACCACCCCCTTTACCTCCTAATGTGGTTCCTCAATCTGTAGGAGCTGGTAGGCGTGATGAAGATGTTGATAGAAGGTATGGAGCTACAAGGCACTCTCAGAGACTTTCTCCAAGGCATGAAGAAAAAGAACGGAGACGGTCTGAAGAGACTGTGGTTTCTCAGGATGATGCCAAACGCCGAAAAGAAGACGATTTTCGAGATCGAAAACGTGAGGAAATTAAGGTGGAAGAGAGGGAGCGGGAAAGAGAGAAAGCAAACATTCTGAAGGAAGAGTTGGATTTAAATGCCGCATCCAAGAGACGTAAACCCAAGAGGGAGCATTTACCAACTGGTGAACCTGGTGAGTACTCACCTGTGGCCCATCCACCTTCTTCCGCTGGTATTGGCATGTCACTAGCATATGATGGAAGGGATAGAGGAGACAGAAAGGGACCCATCATGCAGCATCCAAGTTACGTAGATGAATCAAGTCTCAGGATCCACGGTAAAGAGGTGGCCAGCAAGTTGAATCGCCGTGATTCAGATCCCTTGTATGACCGTGAATGGGAGGATGAGAAGAGACAAAGAGCTGATCAGAAGCGAAGGCACCGAAAGTAA

>Glyma08g05320.1   sequence type=predicted peptide   gene model=Glyma08g05320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLPPIECVYVTEECIREWRSGNPALKVSEEFLGEAELIKIKAQELKGKEVRVNTRILYQQTKFNLLREESEGYAKLVTLLCRDSEAPTQKSSAATIGIIKSLIGHFDLDPNRVFDIVLECFELQPDDDVFIELIPIFPKSHASQILGFKFQYYQRMEVNSPVPFGLYRLTALLVKQDFIDLDSIYAHLLPRDDEAFEHYNTFSSKRLDEANKIGRINLAATGKDLMDDEKQGDVTIDLFAAIDMETDAIEERTTELQSSQTLGLLTGFLSVDDWYHAHLLFECLSPLNAVEHIQICDSLFRLIKKSISSAYDVIRQTHLQNPGSSTGGSTDVMDVDNSSGYSSFIDLPKELFQMLACTGPYLYRDTVLLQKVCRVLRGYYLSALELVSHGNGVLNPQLQVPGNPHLHLKEARLRVEDALGACLLPSLQLIPANPAVGQEIWELLSLLPYEVRYRLYGEWEKDDERIPMLLSARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHANPMTVLRTIVHQIEAYRDMITPVVDAFKYLTQLEYDILEYVVIERLALGGRDKLKDDGLNLSDWLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKKGQGIELVLLQELIQQMANVQYTENLTEEQLDAMAGSETLRYQATSFGVTRNNKALIKSTSRLRDALLPKDEPKLAIPLLLLIAQHRSLVVINADAPYIKMVSEQFDRCHGTLLQYVEFLCSAVTPASNYGILIPSLNDLVHLYHLDPEVAFLIYRPVMRLFKSPGNPDVCWPLDDKNAASDASMNFESDPLDHSASMVLNLGSAQNPISWSYLLDTVKTMLPSKAWNSLSPDLYATFWGLTLYDLYVPKNRYESEIAKLHANLKSLEELSDNSSSAITKRKKEKERIQESLDRLISELHKHEENVASVRRRLSHEKDKWLSSCPDTLKINMEFLQRCIFPRCTFSMPDAVYCAMFVHTLHSLGTPFFNTVNHIDVLICKTLQPMICCCTEYEAGRLGRFLYETLKIAYYWKSDESIYERECGNMPGFAVYYRYPNSQRVTYGQFIKVHWKWSQRITRLLIQCLESTEYMEIRNALIMLTKISSVFPVTRKSGINLEKRVAKIKSDEREDLKVLATGVAAALAARKPSWVTDEEFGMGYLELKPAPSVTKSSAGNSATVQSGINLNVSQTESASGKHVDSGNIVKDQAMRTKTADGRSERTESITVTKSDTGHIKLKSSSMVNGLDAQSSLAPSSVQSGTSKSMENPKQVEESINRASDEHGTRTTELRTSAKRSVPAGSLSKPSKQDPVKEDGRSGKPVARTSGSSSSDKELQTHALEGRYTGTTNVPSSNGNTISGSTKGSNPPVKISLDGPGNESKAEVGVAKSSDIRASMVKDDGNDITDNPRGASSRVVHSPRYENTGVTSKSNDKVQKRASSAEEPDRLGKRRKGDVELRDFETEVRFSEREKMMDPRFADDKSGPEEHGLYRAGDKPLERAKDKGNERYERDHRERMDRLDKSRGDDFVAEKPRDRSIERYGRERSVERMQERGSDRSFNRLPEKAKDERNKDDRNKLRYNDASVEKSHGDDRFHGQSLPPPPPLPPNVVPQSVGAGRRDEDVDRRYGATRHSQRLSPRHEEKERRRSEETVVSQDDAKRRKEDDFRDRKREEIKVEEREREREKANILKEELDLNAASKRRKPKREHLPTGEPGEYSPVAHPPSSAGIGMSLAYDGRDRGDRKGPIMQHPSYVDESSLRIHGKEVASKLNRRDSDPLYDREWEDEKRQRADQKRRHRK*







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