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Report for Sequence Feature Glyma08g05305

Feature Type:gene_model
Chromosome:Gm08
Start:3760935
stop:3762088
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g05305
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G32285AT Annotation by Michelle Graham. TAIR10: ENTH/ANTH/VHS superfamily protein | chr4:15586003-15587910 FORWARD LENGTH=635 SoyBaseE_val: 1.00E-18ISS
GO:0048268GO-bp Annotation by Michelle Graham. GO Biological Process: clathrin coat assembly SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0030118GO-cc Annotation by Michelle Graham. GO Cellular Compartment: clathrin coat SoyBaseN/AISS
GO:0005543GO-mf Annotation by Michelle Graham. GO Molecular Function: phospholipid binding SoyBaseN/AISS
GO:0005545GO-mf Annotation by Michelle Graham. GO Molecular Function: 1-phosphatidylinositol binding SoyBaseN/AISS
GO:0030276GO-mf Annotation by Michelle Graham. GO Molecular Function: clathrin binding SoyBaseN/AISS
PTHR22951Panther CLATHRIN ASSEMBLY PROTEIN JGI ISS
PTHR22951:SF1Panther CLATHRIN ASSEMBLY PROTEIN JGI ISS
PF07651PFAM ANTH domain JGI ISS
UniRef100_B9SNG6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Clathrin assembly protein, putative n=1 Tax=Ricinus communis RepID=B9SNG6_RICCO SoyBaseE_val: 1.00E-76ISS
UniRef100_I1K5H4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K5H4_SOYBN SoyBaseE_val: 1.00E-117ISS

Expression Patterns of Glyma08g05305
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g05305 not represented in the dataset
Glyma08g05305 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g05305
ParalogEvidenceComments
Glyma05g34340 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g05305 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g048300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g05305
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g05305
>Glyma08g05305.1   sequence type=CDS   gene model=Glyma08g05305   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCTATGCAAAGATTGCTTCAGCAAGTGGCTTCTCTGACATGAACCTTATCATCCTAAAAGCAACAGCCCCAGATGACTTGCCTCTGCATGAAAAATACATACAACACCTCTTCAAACTCTTCGCCCTCTGGACTGAGATCTTATGGACACGTTCCAAAGCCTTGATTTCTCTCAACCCTTGCCATTTCAAGGATGATTCCTCCTTCTCCTCCCTTAACTGTGTTGCTTTGGAAGACCAAGAAGAAGAAGAAGCCAATATGGCTGAAATGGGTCGAGTGCTTGAAATGTTACCGCAACTGCAGAGCCTTATAGATAGGGTGATGGAGTGTTACCCTGTGGGAGTGGCAGCGCCAAGTTTCATTGTGCAGGGTGCCATGAAACTCATAATTCGTGACAGCTTCGTTTGCTACACAAAGTTCAGAAGAGAAATAGTGGCGGTTTTGGACAATCTACTTGAGATGCCGTACAGGAACTGCATAGCTGCTTTCAATATATACAAGAAAGCAGCAGCGCAAACAAATGAGCTTTATGAGTGGTGCAAGGCAAAGGGTTTGTGTGGTATGTACGAGTACCCTTTGTTGGACCCAATTCCATACATACAAATCAAGGCTTTGGAAAGTTTTCTGAGTGGCATGTGGCAGTTGACATATTGGGAGACACTGTTGGAAACCTCTATTAGTTTTATTAGTTTTAGTCATGCTTATCAGAGGGGCCTGTGCAGCCTGTTCTATCATCGGGAATTTGATATGGAACAACATAGCTTTGATGCAAACGAAGGGCACTATCACGAGAATGCAAATGACACATGGAGAATGGCAGTTTACAACCCCTTTTCTGAGCCGTATTAA
Predicted protein sequences of Glyma08g05305
>Glyma08g05305.1   sequence type=predicted peptide   gene model=Glyma08g05305   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSYAKIASASGFSDMNLIILKATAPDDLPLHEKYIQHLFKLFALWTEILWTRSKALISLNPCHFKDDSSFSSLNCVALEDQEEEEANMAEMGRVLEMLPQLQSLIDRVMECYPVGVAAPSFIVQGAMKLIIRDSFVCYTKFRREIVAVLDNLLEMPYRNCIAAFNIYKKAAAQTNELYEWCKAKGLCGMYEYPLLDPIPYIQIKALESFLSGMWQLTYWETLLETSISFISFSHAYQRGLCSLFYHREFDMEQHSFDANEGHYHENANDTWRMAVYNPFSEPY*






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