Glyma08g05270 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g05270

Feature Type:	gene_model
Chromosome:	Gm08
Start:	3737725
stop:	3739900
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g05270

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G01818	AT	Annotation by Michelle Graham. TAIR10: PLATZ transcription factor family protein \| chr2:353552-355370 REVERSE LENGTH=222	SoyBase	E_val: 2.00E-41	ISS
PF04640	PFAM	PLATZ transcription factor	JGI		ISS
UniRef100_D7LPW1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc ion binding protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LPW1_ARALL	SoyBase	E_val: 1.00E-39	ISS
UniRef100_I1KQE1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KQE1_SOYBN	SoyBase	E_val: 2.00E-178	ISS

Expression Patterns of Glyma08g05270

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g05270

Paralog	Evidence	Comments
Glyma05g34370	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g05270 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g048000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g05270

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g05270

Limit To All Plant Sequences

>Glyma08g05270.1   sequence type=CDS   gene model=Glyma08g05270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGGGGCAGAATCTTTCCCCAAAGGAAAGGAGTAGAGATTGGATTGGAGTTCTTATGAACAGCTGCTTTGGTTATTGCGATTATCACCATGACCTTCGATCTAATGAGATGAATGTGTTCTGCGTAGACTGTGCACTTAGGATGTGTAGGCACTGTAAGGAAGCTCATTCCCTACATAGAAGGTTTCAGATTTACAAATATTCCTACCAGGATGTCTTCCGCCATGCCGAGCTGCAGAAGTATTTTGATTGCTCCAAAATTCAGACTTACATATCCAATAATGAAAGGATTGTGCATCTCAAACCTCGGCCTTCAATCACCAAATCTAAATCTGCTGATCTAAGCCCCGACTCTAAATCCAAAGAAACCGGCATAGCAACAAGACCAAAGTCAGGTGGCACGTGTGAAGAATGTGGAAAACACTTACAAGATGAGCGTAATCGCTTCTGCTCCATTACATGCAAGATCTCAGTGCATCCAGTGGAGACCCAAAACCAATTTCAAAGTCAATGTTCACAAAACCACCAAAGTGCTAGAGGCATCATCACTCCAAAACCTCAAGGCATTGACTTTACAATGAATGATAACCATAATTCAGAACCGGAGTCATCTATCTCTGAAGCTGAGCCATATGGGTGGGTTGAAGTTGTGAATTTCAGAAAGCGTCCTAGGAAAAGTATCCCGCAGAGGCCTGTCTTTGTTTTCACGTCTTAG

Predicted protein sequences of Glyma08g05270

Limit To All Plant Sequences

>Glyma08g05270.1   sequence type=predicted peptide   gene model=Glyma08g05270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGQNLSPKERSRDWIGVLMNSCFGYCDYHHDLRSNEMNVFCVDCALRMCRHCKEAHSLHRRFQIYKYSYQDVFRHAELQKYFDCSKIQTYISNNERIVHLKPRPSITKSKSADLSPDSKSKETGIATRPKSGGTCEECGKHLQDERNRFCSITCKISVHPVETQNQFQSQCSQNHQSARGIITPKPQGIDFTMNDNHNSEPESSISEAEPYGWVEVVNFRKRPRKSIPQRPVFVFTS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain