Glyma08g05230 - SoyBase

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Report for Sequence Feature Glyma08g05230

Feature Type:	gene_model
Chromosome:	Gm08
Start:	3710834
stop:	3713320
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g05230

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G01770	AT	Annotation by Michelle Graham. TAIR10: vacuolar iron transporter 1 \| chr2:334775-336425 REVERSE LENGTH=250	SoyBase	E_val: 1.00E-144	ISS
GO:0006880	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular sequestering of iron ion	SoyBase	N/A	ISS
GO:0055072	GO-bp	Annotation by Michelle Graham. GO Biological Process: iron ion homeostasis	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005381	GO-mf	Annotation by Michelle Graham. GO Molecular Function: iron ion transmembrane transporter activity	SoyBase	N/A	ISS
KOG4473	KOG	Uncharacterized membrane protein	JGI		ISS
PF01988	PFAM	VIT family	JGI		ISS
UniRef100_G7LBG9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Vacuolar iron transporter n=1 Tax=Medicago truncatula RepID=G7LBG9_MEDTR	SoyBase	E_val: 2.00E-148	ISS
UniRef100_I1KQD6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KQD6_SOYBN	SoyBase	E_val: 4.00E-170	ISS

Expression Patterns of Glyma08g05230

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g05230

Paralog	Evidence	Comments
Glyma05g34430	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g05230 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g047500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g05230

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g05230

Limit To All Plant Sequences

>Glyma08g05230.1   sequence type=CDS   gene model=Glyma08g05230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCCACCTTGGAACCTGAGAAAAAAAGCCTTCTCAGACACCACTCCGAGAAGCACTTCACCGCCGGCGAAATCGTCCGCGACATCATCATCGGCGTTTCCGATGGCCTTACCGTCCCCTTCGCCCTCGCTGCCGGACTCTCCGGAGCCAATGCCACCTCCTCCATTGTTCTCACCGCCGGCATAGCCGAAGTCGCCGCCGGCGCCATCTCCATGGGTCTCGGCGGTTATTTGGCAGCAAAAAGTGAATCTGATCACTACGCTAGAGAATTGAAAAGAGAGCAAGAGGAAATCATCGCCGTGCCAGATACTGAAGCGGCAGAGGTAGCAGAAATAATGGCTCAGTATGGAATAGAGGCACATGAATATGCACCCGTGGTGAGTGCTCTCAGAAAAAACCCTCAAGCATGGCTTGATTTCATGATGAAATTTGAGCTGGGACTAGAGAAGCCAGATCCAAGGAGAGCATTGCATAGTGCAATGACGATTGCCATTGCTTACATATTGGGTGGGGTTGTTCCTCTCCTTCCTTACATGTTCATTCCAGAGGCAGCAGAGGCAGTTGTGTTTTCAGTTCTTGTTACTTTGGTTGCACTGCTGATTTTTGGCTATGCCAAAGGGCACTTCACGGGCAATAAACCATTCAGGAGTGCTTTGGAAACAGCTCTAATTGGCGCCATCGCCTCTGCAGCTGCGTTTGGTTTGGCAAAGGCTTTCCATCCATAG

Predicted protein sequences of Glyma08g05230

Limit To All Plant Sequences

>Glyma08g05230.1   sequence type=predicted peptide   gene model=Glyma08g05230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAATLEPEKKSLLRHHSEKHFTAGEIVRDIIIGVSDGLTVPFALAAGLSGANATSSIVLTAGIAEVAAGAISMGLGGYLAAKSESDHYARELKREQEEIIAVPDTEAAEVAEIMAQYGIEAHEYAPVVSALRKNPQAWLDFMMKFELGLEKPDPRRALHSAMTIAIAYILGGVVPLLPYMFIPEAAEAVVFSVLVTLVALLIFGYAKGHFTGNKPFRSALETALIGAIASAAAFGLAKAFHP*

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