SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research




Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma08g05220): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma08g05220): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma08g05220

Feature Type:gene_model
Chromosome:Gm08
Start:3703224
stop:3706254
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G67970AT Annotation by Michelle Graham. TAIR10: heat shock transcription factor A8 | chr1:25484844-25486313 REVERSE LENGTH=374 SoyBaseE_val: 2.00E-89ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0043565GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding SoyBaseN/AISS
KOG0627 KOG Heat shock transcription factor JGI ISS
PTHR10015Panther HEAT SHOCK TRANSCRIPTION FACTOR JGI ISS
PTHR10015:SF7Panther HEAT SHOCK TRANSCRIPTION FACTOR JGI ISS
PF00447PFAM HSF-type DNA-binding JGI ISS
UniRef100_G7LBG8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Heat stress transcription factor A-8 n=1 Tax=Medicago truncatula RepID=G7LBG8_MEDTR SoyBaseE_val: 1.00E-179ISS
UniRef100_I1KQD5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KQD5_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g05220 not represented in the dataset

Glyma08g05220 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma05g34450 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g047400 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma08g05220.5   sequence type=transcript   gene model=Glyma08g05220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAACCCCGAAAAAAGAAAAAGGTTGGAAAGTGCTGTGACAGCACATAAAAGAAGGCCCACGGAAATTTCATTTCATTGAGTTCCCCTTTGCCAAGTCTTGTCTTGTGTTTGTTGCAGTTGCGGTTGCGGTTGCGATTGCGATGGTGAAATCGAACGAGAACGGTTCTGGTTCCGTTTCGGTGCCTCCTTTCCTGAAAAAATGTTACGATATGGTGGAAGACCGCAACACTGATTCTATCATCCGTTGGAGCGATGGCGGTGACAGCTTTGTCATCTCCGACATCACTCAATTCTCCGTCACGCTCCTTCCCACCTATTTCAAACACAACAATTTCTCCAGTTTCATCAGACAACTCAATATCTATGGTTTCAGGAAAATTGATACGGATTGCTGGGAATTTGCCAATGAGAACTTTGTTAGAGGTCAAAAGCATTTGTTGAAGAATATACGTAGAAGGAAACATCCACACAGTGCAGATCAGCAAAAAGCATTGCCACAGCAAGACAATTGTGATGAACCATCACAAGAAGCACCGTATCATGGCCTTTGGAAAGAAGTTGAGAATCTAAAACTTGATAAAAATTCGCTCACGCAAGAATTGGTCAAACTTAGGCAACACCAGGAATCTGCTGAGAATAAGTTGCTGCTCCTGAGTGATCGCCTTCAAGGAATGGAAAAGCATCAGCAGCAGATGTTATCATTTTTAGTCATGGTTGTGCAAAGCCCTGGGTTCATGGTTCAGCTTCTTCATCCTAAGGAAAATAATTGGCATTTGGCTGAATCATGGAATATATTGGATCAAGATAAACAAGATGACAAGCCAGTTGCTTCTGATGGGATGATAATAAAGTATAAACCACCTGTAGGTGAAAAACTAAAGCCTGTAGTTCCTCTGTCTCCTGGTTTCGAAAAGCAAACAGAACCCGAGCTTTCTGCAGAAGGGCTAAAAGACTTGTGCGTCAGTTCTGAATTCTTGAAAGTGCTTCTGGATGAAAAATTATCTCCATTAGAAAATCATTCTCCATTTCTCCTACCAGATTTACCTGATGATGGTTCATGGGAACAGCTTTTTCTAGGTAGTCCTTTCATGGGAAACATTCAAGATTCTAATAAAGAAAGTGAGGGGCACACCAATGGTGGAATGGAGATGGAACCAACAATATCTGAGACTCCAAATGAAAATTCTCGAACTTTTGAATCGATGATTGTAGAGATGGAGAAAACTCGAGAATGAGTTGGAGTTGTATGCACATGGTGGGCTGTCTTCTTGGAATCCATCAGATATTTTTCAGCTGGGCTGTCTCATACTGAGCTAATGGAGCTTTAGTTTCTGAAACTAACAATATATAGGGAAGGAAGTAATAATGTCCATCAGATATTTTTCAGCTGGGCTGTCTTCACAGATTACTTCACACTATAATTATATTATAGTATTAAGTCGCAATTATTTTCTCTCCCATCTTCCTTCAGCAGTTGTTAGATCCTCTTCTAGAATCCATGTGAGTCTGCTCTCATTTATATGTTGAGATGCTAAATATATTTTGGCTTCCTGATACATGGTGTCGGAGATCAGGAGTTGTATGGTAGTGCACAAGTGCGGCGACCTATATATATAGCGGATCAATTATTTCTTTTATGGAAAATTGTAAGGGAAAACGGCAACTTTATTTTTTGTGCCACATTAAACAGTGGCACTTGCCTTCATATATATTATAAAATTTCACGAAATTCATGCTTCTCTTGCATACTAGTGTTTGCAGAAGCCAGTGCTCTGATAATGCTCTTTCCCTTTTCTCTTACTTCTCCTAGTTCTCATGTCTCTGAACTTTATTCTTCTACTGTTGTGTTTTGATATGGCAGCAAAGAGATTTGTTGCCCCACAAAAAGGGTCATCATTGTATGACATGATTTTTTTTCCTTCTTTTGTTAAATTAAGTTGGATTAACACTAACTTCAAAAC

>Glyma08g05220.6   sequence type=transcript   gene model=Glyma08g05220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAACCCCGAAAAAAGAAAAAGGTTGGAAAGTGCTGTGACAGCACATAAAAGAAGGCCCACGGAAATTTCATTTCATTGAGTTCCCCTTTGCCAAGTCTTGTCTTGTGTTTGTTGCAGTTGCGGTTGCGGTTGCGATTGCGATGGTGAAATCGAACGAGAACGGTTCTGGTTCCGTTTCGGTGCCTCCTTTCCTGAAAAAATGTTACGATATGGTGGAAGACCGCAACACTGATTCTATCATCCGTTGGAGCGATGGCGGTGACAGCTTTGTCATCTCCGACATCACTCAATTCTCCGTCACGCTCCTTCCCACCTATTTCAAACACAACAATTTCTCCAGTTTCATCAGACAACTCAATATCTATGGTTTCAGGAAAATTGATACGGATTGCTGGGAATTTGCCAATGAGAACTTTGTTAGAGGTCAAAAGCATTTGTTGAAGAATATACGTAGAAGGAAACATCCACACAGTGCAGATCAGCAAAAAGCATTGCCACAGCAAGACAATTGTGATGAACCATCACAAGAAGCACCGTATCATGGCCTTTGGAAAGAAGTTGAGAATCTAAAACTTGATAAAAATTCGCTCACGCAAGAATTGGTCAAACTTAGGCAACACCAGGAATCTGCTGAGAATAAGTTGCTGCTCCTGAGTGATCGCCTTCAAGGAATGGAAAAGCATCAGCAGCAGATGTTATCATTTTTAGTCATGGTTGTGCAAAGCCCTGGGTTCATGGTTCAGCTTCTTCATCCTAAGGAAAATAATTGGCATTTGGCTGAATCATGGAATATATTGGATCAAGATAAACAAGATGACAAGCCAGTTGCTTCTGATGGGATGATAATAAAGTATAAACCACCTGTAGGTGAAAAACTAAAGCCTGTAGTTCCTCTGTCTCCTGGTTTCGAAAAGCAAACAGAACCCGAGCTTTCTGCAGAAGGGCTAAAAGACTTGTGCGTCAGTTCTGAATTCTTGAAAGTGCTTCTGGATGAAAAATTATCTCCATTAGAAAATCATTCTCCATTTCTCCTACCAGATTTACCTGATGATGGTTCATGGGAACAGCTTTTTCTAGGTAGTCCTTTCATGGGAAACATTCAAGATTCTAATAAAGAAAGTGAGGGGCACACCAATGGTGGAATGGAGATGGAACCAACAATATCTGAGACTCCAAATGAAAATTCTCGAACTTTTGAATCGATGATTGTAGAGATGGAGAAAACTCGAGAATGAGTTGGAGTTGTATGCACATGGTGGGCTGTCTTCTTGGAATCCATCAGATATTTTTCAGCTGGGCTGTCTCATACTGAGCTAATGGAGCTTTAGTTTCTGAAACTAACAATATATAGGGAAGGAAGTAATAATGTCCATCAGATATTTTTCAGCTGGGCTGTCTTCACAGATTACTTCACACTATAATTATATTATAGTATTAAGTCGCAATTATTTTCTCTCCCATCTTCCTTCAGCAGTTGTTAGATCCTCTTCTAGAATCCATATTTTGGCTTCCTGATACATGGTGTCGGAGATCAGGAGTTGTATGGTAGTGCACAAGTGCGGCGACCTATATATATAGCGGATCAATTATTTCTTTTATGGAAAATTGTAAGGGAAAACGGCAACTTTATTTTTTGTGCCACATTAAACAGTGGCACTTGCCTTCATATATATTATAAAATTTCACGAAATTCATGCTTCTCTTGCATACTAGTGTTTGCAGAAGCCAGTGCTCTGATAATGCTCTTTCCCTTTTCTCTTACTTCTCCTAGTTCTCATGTCTCTGAACTTTATTCTTCTACTGTTGTGTTTTGATATGGCAGCAAAGAGATTTGTTGCCCCACAAAAAGGGTCATCATTGTATGACATGATTTTTTTTCCTTCTTTTGTTAAATTAAGTTGGATTAACACTAACTTCAAAAC

>Glyma08g05220.4   sequence type=CDS   gene model=Glyma08g05220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGAAATCGAACGAGAACGGTTCTGGTTCCGTTTCGGTGCCTCCTTTCCTGAAAAAATGTTACGATATGGTGGAAGACCGCAACACTGATTCTATCATCCGTTGGAGCGATGGCGGTGACAGCTTTGTCATCTCCGACATCACTCAATTCTCCGTCACGCTCCTTCCCACCTATTTCAAACACAACAATTTCTCCAGTTTCATCAGACAACTCAATATCTATGGTTTCAGGAAAATTGATACGGATTGCTGGGAATTTGCCAATGAGAACTTTGTTAGAGGTCAAAAGCATTTGTTGAAGAATATACGTAGAAGGAAACATCCACACAGTGCAGATCAGCAAAAAGCATTGCCACAGCAAGACAATTGTGATGAACCATCACAAGAAGCACCGTATCATGGCCTTTGGAAAGAAGTTGAGAATCTAAAACTTGATAAAAATTCGCTCACGCAAGAATTGGTCAAACTTAGGCAACACCAGGAATCTGCTGAGAATAAGTTGCTGCTCCTGAGTGATCGCCTTCAAGGAATGGAAAAGCATCAGCAGCAGATGTTATCATTTTTAGTCATGGTTGTGCAAAGCCCTGGGTTCATGGTTCAGCTTCTTCATCCTAAGGAAAATAATTGGCATTTGGCTGAATCATGGAATATATTGGATCAAGATAAACAAGATGACAAGCCAGTTGCTTCTGATGGGATGATAATAAAGTATAAACCACCTGTAGGTGAAAAACTAAAGCCTGTAGTTCCTCTGTCTCCTGGTTTCGAAAAGCAAACAGAACCCGAGCTTTCTGCAGAAGGGCTAAAAGACTTGTGCGTCAGTTCTGAATTCTTGAAAGTGCTTCTGGATGAAAAATTATCTCCATTAGAAAATCATTCTCCATTTCTCCTACCAGATTTACCTGATGATGGTTCATGGGAACAGCTTTTTCTAGGTAGTCCTTTCATGGGAAACATTCAAGATTCTAATAAAGAAAGTGAGGGGCACACCAATGGTGGAATGGAGATGGAACCAACAATATCTGAGACTCCAAATGAAAATTCTCGAACTTTTGAATCGATGATTGTAGAGATGGAGAAAACTCGAGAATGA

>Glyma08g05220.5   sequence type=CDS   gene model=Glyma08g05220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGAAATCGAACGAGAACGGTTCTGGTTCCGTTTCGGTGCCTCCTTTCCTGAAAAAATGTTACGATATGGTGGAAGACCGCAACACTGATTCTATCATCCGTTGGAGCGATGGCGGTGACAGCTTTGTCATCTCCGACATCACTCAATTCTCCGTCACGCTCCTTCCCACCTATTTCAAACACAACAATTTCTCCAGTTTCATCAGACAACTCAATATCTATGGTTTCAGGAAAATTGATACGGATTGCTGGGAATTTGCCAATGAGAACTTTGTTAGAGGTCAAAAGCATTTGTTGAAGAATATACGTAGAAGGAAACATCCACACAGTGCAGATCAGCAAAAAGCATTGCCACAGCAAGACAATTGTGATGAACCATCACAAGAAGCACCGTATCATGGCCTTTGGAAAGAAGTTGAGAATCTAAAACTTGATAAAAATTCGCTCACGCAAGAATTGGTCAAACTTAGGCAACACCAGGAATCTGCTGAGAATAAGTTGCTGCTCCTGAGTGATCGCCTTCAAGGAATGGAAAAGCATCAGCAGCAGATGTTATCATTTTTAGTCATGGTTGTGCAAAGCCCTGGGTTCATGGTTCAGCTTCTTCATCCTAAGGAAAATAATTGGCATTTGGCTGAATCATGGAATATATTGGATCAAGATAAACAAGATGACAAGCCAGTTGCTTCTGATGGGATGATAATAAAGTATAAACCACCTGTAGGTGAAAAACTAAAGCCTGTAGTTCCTCTGTCTCCTGGTTTCGAAAAGCAAACAGAACCCGAGCTTTCTGCAGAAGGGCTAAAAGACTTGTGCGTCAGTTCTGAATTCTTGAAAGTGCTTCTGGATGAAAAATTATCTCCATTAGAAAATCATTCTCCATTTCTCCTACCAGATTTACCTGATGATGGTTCATGGGAACAGCTTTTTCTAGGTAGTCCTTTCATGGGAAACATTCAAGATTCTAATAAAGAAAGTGAGGGGCACACCAATGGTGGAATGGAGATGGAACCAACAATATCTGAGACTCCAAATGAAAATTCTCGAACTTTTGAATCGATGATTGTAGAGATGGAGAAAACTCGAGAATGA

>Glyma08g05220.6   sequence type=CDS   gene model=Glyma08g05220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGAAATCGAACGAGAACGGTTCTGGTTCCGTTTCGGTGCCTCCTTTCCTGAAAAAATGTTACGATATGGTGGAAGACCGCAACACTGATTCTATCATCCGTTGGAGCGATGGCGGTGACAGCTTTGTCATCTCCGACATCACTCAATTCTCCGTCACGCTCCTTCCCACCTATTTCAAACACAACAATTTCTCCAGTTTCATCAGACAACTCAATATCTATGGTTTCAGGAAAATTGATACGGATTGCTGGGAATTTGCCAATGAGAACTTTGTTAGAGGTCAAAAGCATTTGTTGAAGAATATACGTAGAAGGAAACATCCACACAGTGCAGATCAGCAAAAAGCATTGCCACAGCAAGACAATTGTGATGAACCATCACAAGAAGCACCGTATCATGGCCTTTGGAAAGAAGTTGAGAATCTAAAACTTGATAAAAATTCGCTCACGCAAGAATTGGTCAAACTTAGGCAACACCAGGAATCTGCTGAGAATAAGTTGCTGCTCCTGAGTGATCGCCTTCAAGGAATGGAAAAGCATCAGCAGCAGATGTTATCATTTTTAGTCATGGTTGTGCAAAGCCCTGGGTTCATGGTTCAGCTTCTTCATCCTAAGGAAAATAATTGGCATTTGGCTGAATCATGGAATATATTGGATCAAGATAAACAAGATGACAAGCCAGTTGCTTCTGATGGGATGATAATAAAGTATAAACCACCTGTAGGTGAAAAACTAAAGCCTGTAGTTCCTCTGTCTCCTGGTTTCGAAAAGCAAACAGAACCCGAGCTTTCTGCAGAAGGGCTAAAAGACTTGTGCGTCAGTTCTGAATTCTTGAAAGTGCTTCTGGATGAAAAATTATCTCCATTAGAAAATCATTCTCCATTTCTCCTACCAGATTTACCTGATGATGGTTCATGGGAACAGCTTTTTCTAGGTAGTCCTTTCATGGGAAACATTCAAGATTCTAATAAAGAAAGTGAGGGGCACACCAATGGTGGAATGGAGATGGAACCAACAATATCTGAGACTCCAAATGAAAATTCTCGAACTTTTGAATCGATGATTGTAGAGATGGAGAAAACTCGAGAATGA

>Glyma08g05220.4   sequence type=predicted peptide   gene model=Glyma08g05220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVKSNENGSGSVSVPPFLKKCYDMVEDRNTDSIIRWSDGGDSFVISDITQFSVTLLPTYFKHNNFSSFIRQLNIYGFRKIDTDCWEFANENFVRGQKHLLKNIRRRKHPHSADQQKALPQQDNCDEPSQEAPYHGLWKEVENLKLDKNSLTQELVKLRQHQESAENKLLLLSDRLQGMEKHQQQMLSFLVMVVQSPGFMVQLLHPKENNWHLAESWNILDQDKQDDKPVASDGMIIKYKPPVGEKLKPVVPLSPGFEKQTEPELSAEGLKDLCVSSEFLKVLLDEKLSPLENHSPFLLPDLPDDGSWEQLFLGSPFMGNIQDSNKESEGHTNGGMEMEPTISETPNENSRTFESMIVEMEKTRE*

>Glyma08g05220.5   sequence type=predicted peptide   gene model=Glyma08g05220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVKSNENGSGSVSVPPFLKKCYDMVEDRNTDSIIRWSDGGDSFVISDITQFSVTLLPTYFKHNNFSSFIRQLNIYGFRKIDTDCWEFANENFVRGQKHLLKNIRRRKHPHSADQQKALPQQDNCDEPSQEAPYHGLWKEVENLKLDKNSLTQELVKLRQHQESAENKLLLLSDRLQGMEKHQQQMLSFLVMVVQSPGFMVQLLHPKENNWHLAESWNILDQDKQDDKPVASDGMIIKYKPPVGEKLKPVVPLSPGFEKQTEPELSAEGLKDLCVSSEFLKVLLDEKLSPLENHSPFLLPDLPDDGSWEQLFLGSPFMGNIQDSNKESEGHTNGGMEMEPTISETPNENSRTFESMIVEMEKTRE*

>Glyma08g05220.6   sequence type=predicted peptide   gene model=Glyma08g05220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVKSNENGSGSVSVPPFLKKCYDMVEDRNTDSIIRWSDGGDSFVISDITQFSVTLLPTYFKHNNFSSFIRQLNIYGFRKIDTDCWEFANENFVRGQKHLLKNIRRRKHPHSADQQKALPQQDNCDEPSQEAPYHGLWKEVENLKLDKNSLTQELVKLRQHQESAENKLLLLSDRLQGMEKHQQQMLSFLVMVVQSPGFMVQLLHPKENNWHLAESWNILDQDKQDDKPVASDGMIIKYKPPVGEKLKPVVPLSPGFEKQTEPELSAEGLKDLCVSSEFLKVLLDEKLSPLENHSPFLLPDLPDDGSWEQLFLGSPFMGNIQDSNKESEGHTNGGMEMEPTISETPNENSRTFESMIVEMEKTRE*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo