Glyma08g05200 - SoyBase

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Report for Sequence Feature Glyma08g05200

Feature Type:	gene_model
Chromosome:	Gm08
Start:	3685159
stop:	3688493
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g05200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G31570	AT	Annotation by Michelle Graham. TAIR10: glutathione peroxidase 2 \| chr2:13438211-13439775 REVERSE LENGTH=169	SoyBase	E_val: 3.00E-90	ISS
GO:0006979	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to oxidative stress	SoyBase	N/A	ISS
GO:0009407	GO-bp	Annotation by Michelle Graham. GO Biological Process: toxin catabolic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004602	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glutathione peroxidase activity	SoyBase	N/A	ISS
KOG1651	KOG	Glutathione peroxidase	JGI		ISS
PTHR11592	Panther	GLUTATHIONE PEROXIDASE	JGI		ISS
PF00255	PFAM	Glutathione peroxidase	JGI		ISS
UniRef100_C6T020	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glutathione peroxidase n=1 Tax=Glycine max RepID=C6T020_SOYBN	SoyBase	E_val: 4.00E-116	ISS
UniRef100_C6T020	UniRef	Annotation by Michelle Graham. Best UniRef hit: Glutathione peroxidase n=1 Tax=Glycine max RepID=C6T020_SOYBN	SoyBase	E_val: 4.00E-116	ISS

Expression Patterns of Glyma08g05200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g05200

Paralog	Evidence	Comments
Glyma05g34490	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g05200 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g047200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g05200

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g05200

Limit To All Plant Sequences

>Glyma08g05200.4   sequence type=transcript   gene model=Glyma08g05200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGGCGATTCGTATTCGGTGAGCTGGTCCGTTTCCTAGACGAAATGGTGTAAGAATTGAAAGCATGATGATTGATTGATGGGAGCAGCGAACCATATAATTTAATTTAATTTGTGTCCACATGAGAACGTCGTGACCTGCATTTTCTATCTCGCAACACCGCGATAATGGTATAAAATAGTTTCAGATACGTTGCGTTGATTGATTGGTATGAAGTGATTGACTTTTTTTCTTCTTCTATTCTCACACATACCCATCTACTCCTTCCCTCATGGCTGAACAATCTTCCAACTCCATTTACGATTTCACTGTCAAGGACATCAGTGGAAATGATGTGAGTCTGAATGATTACAGCGGGAAGGTTCTACTGATTGTGAATGTCGCCTCTCAATGTGGTTTGACACAGACAAATTACAAAGAATTGAATGTATTGTACGAGAAGTACAAGAATCAAGGATTTGAAATCTTGGCATTTCCGTGCAACCAGTTTGCTGGACAGGAACCAGGAAACAATGAAGAAATTCAGGAAGTAGTTTGCACAAGGTTCAAGGCTGAATTTCCTATCTTTGATAAGGTTGAAGTCAATGGGAAGAATGCAGTGCCACTTTACAAGTTTTTAAAGGAGAAGAAAGGGGGAATATTTGGCGATGGTATCAAGTGGAACTTCACAAAGTTCTTAGTAAACAAAGAAGGGAAGGTTGTGGACAGATATGCACCTACCACCTCACCTCTGAAAATCGAGAAAGACATCGAGAAGCTCTTGCAATCTTGAGTACTAAGATTTTATTCTACATATCTAATGTGCTGAGGACATAGGCAATCTGTCCGGTGTCTTCGAAGGACAAGTAGCAATATGTATCATCAATTAATATAATGCCCTGAAAAGTTCTTAATATATCTCGTGTATTTGGATTTTGGATTGCTCAATAAGTGTAAATTGGTGTTCTAACTCTGTTACCAAAACCATAAAATAATAATATATTTGGATAATCGGATGCATGTTTATGTTATTATGCATGATCCTCATACTACCTTGATTAATTTATATGGACTTGTTGGCAACGGAAAAAAATATATAAAAATACCTTAATGTATAAATTGTTG

Coding sequences of Glyma08g05200

Limit To All Plant Sequences

>Glyma08g05200.3   sequence type=CDS   gene model=Glyma08g05200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGAACAATCTTCCAACTCCATTTACGATTTCACTGTCAAGGACATCAGTGGAAATGATGTGAGTCTGAATGATTACAGCGGGAAGGTTCTACTGATTGTGAATGTCGCCTCTCAATGTGGTTTGACACAGACAAATTACAAAGAATTGAATGTATTGTACGAGAAGTACAAGAATCAAGGATTTGAAATCTTGGCATTTCCGTGCAACCAGTTTGCTGGACAGGAACCAGGAAACAATGAAGAAATTCAGGAAGTAGTTTGCACAAGGTTCAAGGCTGAATTTCCTATCTTTGATAAGGTTGAAGTCAATGGGAAGAATGCAGTGCCACTTTACAAGTTTTTAAAGGAGAAGAAAGGGGGAATATTTGGCGATGGTATCAAGTGGAACTTCACAAAGTTCTTAGTAAACAAAGAAGGGAAGGTTGTGGACAGATATGCACCTACCACCTCACCTCTGAAAATCGAGAAAGACATCGAGAAGCTCTTGCAATCTTGA

>Glyma08g05200.4   sequence type=CDS   gene model=Glyma08g05200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGAACAATCTTCCAACTCCATTTACGATTTCACTGTCAAGGACATCAGTGGAAATGATGTGAGTCTGAATGATTACAGCGGGAAGGTTCTACTGATTGTGAATGTCGCCTCTCAATGTGGTTTGACACAGACAAATTACAAAGAATTGAATGTATTGTACGAGAAGTACAAGAATCAAGGATTTGAAATCTTGGCATTTCCGTGCAACCAGTTTGCTGGACAGGAACCAGGAAACAATGAAGAAATTCAGGAAGTAGTTTGCACAAGGTTCAAGGCTGAATTTCCTATCTTTGATAAGGTTGAAGTCAATGGGAAGAATGCAGTGCCACTTTACAAGTTTTTAAAGGAGAAGAAAGGGGGAATATTTGGCGATGGTATCAAGTGGAACTTCACAAAGTTCTTAGTAAACAAAGAAGGGAAGGTTGTGGACAGATATGCACCTACCACCTCACCTCTGAAAATCGAGAAAGACATCGAGAAGCTCTTGCAATCTTGA

Predicted protein sequences of Glyma08g05200

Limit To All Plant Sequences

>Glyma08g05200.3   sequence type=predicted peptide   gene model=Glyma08g05200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEQSSNSIYDFTVKDISGNDVSLNDYSGKVLLIVNVASQCGLTQTNYKELNVLYEKYKNQGFEILAFPCNQFAGQEPGNNEEIQEVVCTRFKAEFPIFDKVEVNGKNAVPLYKFLKEKKGGIFGDGIKWNFTKFLVNKEGKVVDRYAPTTSPLKIEKDIEKLLQS*

>Glyma08g05200.4   sequence type=predicted peptide   gene model=Glyma08g05200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEQSSNSIYDFTVKDISGNDVSLNDYSGKVLLIVNVASQCGLTQTNYKELNVLYEKYKNQGFEILAFPCNQFAGQEPGNNEEIQEVVCTRFKAEFPIFDKVEVNGKNAVPLYKFLKEKKGGIFGDGIKWNFTKFLVNKEGKVVDRYAPTTSPLKIEKDIEKLLQS*

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