Glyma08g05190 - SoyBase

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Report for Sequence Feature Glyma08g05190

Feature Type:	gene_model
Chromosome:	Gm08
Start:	3676806
stop:	3682887
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g05190

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G48520	AT	Annotation by Michelle Graham. TAIR10: GLU-ADT subunit B \| chr1:17940185-17942540 FORWARD LENGTH=550	SoyBase	E_val: 0	ISS
GO:0006424	GO-bp	Annotation by Michelle Graham. GO Biological Process: glutamyl-tRNA aminoacylation	SoyBase	N/A	ISS
GO:0016556	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA modification	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0016874	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ligase activity	SoyBase	N/A	ISS
GO:0016884	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	SoyBase	N/A	ISS
GO:0050567	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	SoyBase	N/A	ISS
KOG2438	KOG	Glutamyl-tRNA amidotransferase subunit B	JGI		ISS
PTHR11659	Panther	GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT B (MITOCHONDRIAL AND PROKARYOTIC) PET112-RELATED	JGI		ISS
PF02637	PFAM	GatB domain	JGI		ISS
PF02934	PFAM	GatB/GatE catalytic domain	JGI		ISS
UniRef100_I1KQC8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial 2 n=2 Tax=Glycine max RepID=I1KQC8_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1KQC8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial 2 n=2 Tax=Glycine max RepID=I1KQC8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g05190

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g05190

Paralog	Evidence	Comments
Glyma05g34500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g05190 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g047100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g05190

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g05190

Limit To All Plant Sequences

>Glyma08g05190.2   sequence type=transcript   gene model=Glyma08g05190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGATGACAATGGGTTATCACATTGGTTCTCTTCCTCTGTCATCTTTGGCCAAGAAACGCAGCATTAGCCACCACTGTGGCCTGTGGGTGAGCACCCAGCAACTTGGAGGAAAAAAATTTACAAATTTGCGACACAAAACTTCCTCATTGTTGAGAACAGAGCAACATTTGAGTTAGAAAAATTTGTTTTTTCCCTCTCTTCTAAGACCTCCCGAAATGGCTTCCTCAATATTCAGAAGCCTCCAAGTTCACCCCTTCATGCTTTATCCAACAACATTCCTCAGACGAAGAAATGGGGTTTTTCATTTGACGACCAAAGCCACACAATCCCAAACAGACACCCAACAGAGGCAACCTCAGACAAAGGTTTCATCAAGCAACAGCACACAGTCCAAAAAGCTCGACAAAATTCCAAAAGACTATGAAGCCATCATTGGCATTGAAACACATGTTCAGCTCTCGACTCTGACCAAAGCCTTTTGTGGTTGCCCTTACAGTTATGGGTCTTCACCCAACAGCAGCATTTGCCCCATTTGCATGGGCTTGCCTGGTGCTTTGCCTGTTCTGAACTCAAAGATAATTGATTTTGCTGTCAAGTTGGGCCTTGCTCTTAATTGCAACTTGGCTTTCAAATCCAAGTTTGACAGGAAGCAGTATTTCTACCCCGATCTTCCAAAAGGGTATCAGATTTCTCAGTTTGATGTGCCAATTGCCACTGCTGGCTTTCTTGATGTGGATATTCCTGTTGAGTTTGGTGGGGGGCACAAGAGGTTTGGCATTACAAGGGTTCACATGGAAGAGGATGCAGGGAAGCTCCTACATGCAGAGAATGGAAATTACTCACAGGTCGATCTAAATAGGGCAGGGGTGCCTTTGCTTGAGATAGTTTCTGAGCCTGATATGAGAAATGGTATTGAAGCAGCAGAATATGCAGCAGAATTACAGAGGTTGGTGCGGTATTTGGGAGTGAGCAATGGCAATATGCAAGAAGGTTCTCTTCGTTGTGATGTAAATGTATCAATACGACCTATTGGGCAATCAAAGTTTGGGACAAAGGTTGAAATAAAAAATTTGAACTCATTTTCATCAGTGAGCAGAGCTATTGATTTTGAAATTTCTAGGCAGGTGCAACTCCATAGTCAAGGCCAGGAAGATCAGATAGTACAAGAAACTCGTTTATGGGAAGAAGGCTCTCAGAGAACAATTACAATGAGGAAAAAGGAAGGGCTTGCTGATTATCGATATTTTCCAGAACCAGACCTTCCAGCAGTAATCCTTTCTCAAGAATATGTTGATGGTATAAAAAATTCTTTACCAGAGCTTCCAGAAATTAAGCGGAGAAGATATGAGCAGATGGGCTTAAGCATGCAAGATGTTCTTTTCCTGGCTAATGATAAAAATATTGCAGAATTTTTTGATGCAACTCTTGCAAAAGGTGCTGACTCAAAGCTGGTTGCCAACTGGATAATGAGTGATATTGCTGCCTTCATGAAAAATGAAAAGTTGACCATAAATGAGATAAAGCTTACACCTGAAGAGTTGTCTGAGTTGATAGCTTCCATTAAAGGTGGAACCATTAGTGGCAAGATTGGGAAGGAGATACTATTTGAGCTATTAGCCAAGGGTGGAACTGTGAAGGAACTCATACAAAAAAAGGACTTGGTTCAGATAGCAGATCCTGTTGAGATTGAAAAAATGGTGGACAAAGTTATTGTGGAGAATCCAAAACAGGTAGAGCAATATCGAGGAGGCAAAACTAAACTACAAGGTTTTTTCGCTGGCCAGGTATGAACATGTAGAAATTTGTTCCCTC

Coding sequences of Glyma08g05190

Limit To All Plant Sequences

>Glyma08g05190.1   sequence type=CDS   gene model=Glyma08g05190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCCTCAATATTCAGAAGCCTCCAAGTTCACCCCTTCATGCTTTATCCAACAACATTCCTCAGACGAAGAAATGGGGTTTTTCATTTGACGACCAAAGCCACACAATCCCAAACAGACACCCAACAGAGGCAACCTCAGACAAAGGTTTCATCAAGCAACAGCACACAGTCCAAAAAGCTCGACAAAATTCCAAAAGACTATGAAGCCATCATTGGCATTGAAACACATGTTCAGCTCTCGACTCTGACCAAAGCCTTTTGTGGTTGCCCTTACAGTTATGGGTCTTCACCCAACAGCAGCATTTGCCCCATTTGCATGGGCTTGCCTGGTGCTTTGCCTGTTCTGAACTCAAAGATAATTGATTTTGCTGTCAAGTTGGGCCTTGCTCTTAATTGCAACTTGGCTTTCAAATCCAAGTTTGACAGGAAGCAGTATTTCTACCCCGATCTTCCAAAAGGGTATCAGATTTCTCAGTTTGATGTGCCAATTGCCACTGCTGGCTTTCTTGATGTGGATATTCCTGTTGAGTTTGGTGGGGGGCACAAGAGGTTTGGCATTACAAGGGTTCACATGGAAGAGGATGCAGGGAAGCTCCTACATGCAGAGAATGGAAATTACTCACAGGTCGATCTAAATAGGGCAGGGGTGCCTTTGCTTGAGATAGTTTCTGAGCCTGATATGAGAAATGGTATTGAAGCAGCAGAATATGCAGCAGAATTACAGAGGTTGGTGCGGTATTTGGGAGTGAGCAATGGCAATATGCAAGAAGGTTCTCTTCGTTGTGATGTAAATGTATCAATACGACCTATTGGGCAATCAAAGTTTGGGACAAAGGTTGAAATAAAAAATTTGAACTCATTTTCATCAGTGAGCAGAGCTATTGATTTTGAAATTTCTAGGCAGGTGCAACTCCATAGTCAAGGCCAGGAAGATCAGATAGTACAAGAAACTCGTTTATGGGAAGAAGGCTCTCAGAGAACAATTACAATGAGGAAAAAGGAAGGGCTTGCTGATTATCGATATTTTCCAGAACCAGACCTTCCAGCAGTAATCCTTTCTCAAGAATATGTTGATGGTATAAAAAATTCTTTACCAGAGCTTCCAGAAATTAAGCGGAGAAGATATGAGCAGATGGGCTTAAGCATGCAAGATGTTCTTTTCCTGGCTAATGATAAAAATATTGCAGAATTTTTTGATGCAACTCTTGCAAAAGGTGCTGACTCAAAGCTGGTTGCCAACTGGATAATGAGTGATATTGCTGCCTTCATGAAAAATGAAAAGTTGACCATAAATGAGATAAAGCTTACACCTGAAGAGTTGTCTGAGTTGATAGCTTCCATTAAAGGTGGAACCATTAGTGGCAAGATTGGGAAGGAGATACTATTTGAGCTATTAGCCAAGGGTGGAACTGTGAAGGAACTCATACAAAAAAAGGACTTGGTTCAGATAGCAGATCCTGTTGAGATTGAAAAAATGGTGGACAAAGTTATTGTGGAGAATCCAAAACAGGTAGAGCAATATCGAGGAGGCAAAACTAAACTACAAGGTTTTTTCGCTGGCCAGGTAATGAAATTATCTAAAGGCAAGGCAAATCCAGGTCTCCTTAACAAGATCCTCTTGGAGAAATTGAATTCAAAGAGCTGA

>Glyma08g05190.2   sequence type=CDS   gene model=Glyma08g05190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCCTCAATATTCAGAAGCCTCCAAGTTCACCCCTTCATGCTTTATCCAACAACATTCCTCAGACGAAGAAATGGGGTTTTTCATTTGACGACCAAAGCCACACAATCCCAAACAGACACCCAACAGAGGCAACCTCAGACAAAGGTTTCATCAAGCAACAGCACACAGTCCAAAAAGCTCGACAAAATTCCAAAAGACTATGAAGCCATCATTGGCATTGAAACACATGTTCAGCTCTCGACTCTGACCAAAGCCTTTTGTGGTTGCCCTTACAGTTATGGGTCTTCACCCAACAGCAGCATTTGCCCCATTTGCATGGGCTTGCCTGGTGCTTTGCCTGTTCTGAACTCAAAGATAATTGATTTTGCTGTCAAGTTGGGCCTTGCTCTTAATTGCAACTTGGCTTTCAAATCCAAGTTTGACAGGAAGCAGTATTTCTACCCCGATCTTCCAAAAGGGTATCAGATTTCTCAGTTTGATGTGCCAATTGCCACTGCTGGCTTTCTTGATGTGGATATTCCTGTTGAGTTTGGTGGGGGGCACAAGAGGTTTGGCATTACAAGGGTTCACATGGAAGAGGATGCAGGGAAGCTCCTACATGCAGAGAATGGAAATTACTCACAGGTCGATCTAAATAGGGCAGGGGTGCCTTTGCTTGAGATAGTTTCTGAGCCTGATATGAGAAATGGTATTGAAGCAGCAGAATATGCAGCAGAATTACAGAGGTTGGTGCGGTATTTGGGAGTGAGCAATGGCAATATGCAAGAAGGTTCTCTTCGTTGTGATGTAAATGTATCAATACGACCTATTGGGCAATCAAAGTTTGGGACAAAGGTTGAAATAAAAAATTTGAACTCATTTTCATCAGTGAGCAGAGCTATTGATTTTGAAATTTCTAGGCAGGTGCAACTCCATAGTCAAGGCCAGGAAGATCAGATAGTACAAGAAACTCGTTTATGGGAAGAAGGCTCTCAGAGAACAATTACAATGAGGAAAAAGGAAGGGCTTGCTGATTATCGATATTTTCCAGAACCAGACCTTCCAGCAGTAATCCTTTCTCAAGAATATGTTGATGGTATAAAAAATTCTTTACCAGAGCTTCCAGAAATTAAGCGGAGAAGATATGAGCAGATGGGCTTAAGCATGCAAGATGTTCTTTTCCTGGCTAATGATAAAAATATTGCAGAATTTTTTGATGCAACTCTTGCAAAAGGTGCTGACTCAAAGCTGGTTGCCAACTGGATAATGAGTGATATTGCTGCCTTCATGAAAAATGAAAAGTTGACCATAAATGAGATAAAGCTTACACCTGAAGAGTTGTCTGAGTTGATAGCTTCCATTAAAGGTGGAACCATTAGTGGCAAGATTGGGAAGGAGATACTATTTGAGCTATTAGCCAAGGGTGGAACTGTGAAGGAACTCATACAAAAAAAGGACTTGGTTCAGATAGCAGATCCTGTTGAGATTGAAAAAATGGTGGACAAAGTTATTGTGGAGAATCCAAAACAGGTAGAGCAATATCGAGGAGGCAAAACTAAACTACAAGGTTTTTTCGCTGGCCAGGTATGA

Predicted protein sequences of Glyma08g05190

Limit To All Plant Sequences

>Glyma08g05190.1   sequence type=predicted peptide   gene model=Glyma08g05190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSIFRSLQVHPFMLYPTTFLRRRNGVFHLTTKATQSQTDTQQRQPQTKVSSSNSTQSKKLDKIPKDYEAIIGIETHVQLSTLTKAFCGCPYSYGSSPNSSICPICMGLPGALPVLNSKIIDFAVKLGLALNCNLAFKSKFDRKQYFYPDLPKGYQISQFDVPIATAGFLDVDIPVEFGGGHKRFGITRVHMEEDAGKLLHAENGNYSQVDLNRAGVPLLEIVSEPDMRNGIEAAEYAAELQRLVRYLGVSNGNMQEGSLRCDVNVSIRPIGQSKFGTKVEIKNLNSFSSVSRAIDFEISRQVQLHSQGQEDQIVQETRLWEEGSQRTITMRKKEGLADYRYFPEPDLPAVILSQEYVDGIKNSLPELPEIKRRRYEQMGLSMQDVLFLANDKNIAEFFDATLAKGADSKLVANWIMSDIAAFMKNEKLTINEIKLTPEELSELIASIKGGTISGKIGKEILFELLAKGGTVKELIQKKDLVQIADPVEIEKMVDKVIVENPKQVEQYRGGKTKLQGFFAGQVMKLSKGKANPGLLNKILLEKLNSKS*

>Glyma08g05190.2   sequence type=predicted peptide   gene model=Glyma08g05190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSIFRSLQVHPFMLYPTTFLRRRNGVFHLTTKATQSQTDTQQRQPQTKVSSSNSTQSKKLDKIPKDYEAIIGIETHVQLSTLTKAFCGCPYSYGSSPNSSICPICMGLPGALPVLNSKIIDFAVKLGLALNCNLAFKSKFDRKQYFYPDLPKGYQISQFDVPIATAGFLDVDIPVEFGGGHKRFGITRVHMEEDAGKLLHAENGNYSQVDLNRAGVPLLEIVSEPDMRNGIEAAEYAAELQRLVRYLGVSNGNMQEGSLRCDVNVSIRPIGQSKFGTKVEIKNLNSFSSVSRAIDFEISRQVQLHSQGQEDQIVQETRLWEEGSQRTITMRKKEGLADYRYFPEPDLPAVILSQEYVDGIKNSLPELPEIKRRRYEQMGLSMQDVLFLANDKNIAEFFDATLAKGADSKLVANWIMSDIAAFMKNEKLTINEIKLTPEELSELIASIKGGTISGKIGKEILFELLAKGGTVKELIQKKDLVQIADPVEIEKMVDKVIVENPKQVEQYRGGKTKLQGFFAGQV*

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