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Report for Sequence Feature Glyma08g05165

Feature Type:gene_model
Chromosome:Gm08
Start:3667269
stop:3669465
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g05165
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G16110AT Annotation by Michelle Graham. TAIR10: response regulator 2 | chr4:9112979-9115785 FORWARD LENGTH=664 SoyBaseE_val: 5.00E-67ISS
GO:0000160GO-bp Annotation by Michelle Graham. GO Biological Process: phosphorelay signal transduction system SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0007623GO-bp Annotation by Michelle Graham. GO Biological Process: circadian rhythm SoyBaseN/AISS
GO:0009723GO-bp Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus SoyBaseN/AISS
GO:0009735GO-bp Annotation by Michelle Graham. GO Biological Process: response to cytokinin stimulus SoyBaseN/AISS
GO:0009736GO-bp Annotation by Michelle Graham. GO Biological Process: cytokinin mediated signaling pathway SoyBaseN/AISS
GO:0009873GO-bp Annotation by Michelle Graham. GO Biological Process: ethylene mediated signaling pathway SoyBaseN/AISS
GO:0010029GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of seed germination SoyBaseN/AISS
GO:0010119GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of stomatal movement SoyBaseN/AISS
GO:0010150GO-bp Annotation by Michelle Graham. GO Biological Process: leaf senescence SoyBaseN/AISS
GO:0031537GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of anthocyanin metabolic process SoyBaseN/AISS
GO:0048831GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of shoot development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0000156GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphorelay response regulator activity SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PTHR24423Panther TWO COMPONENT SIGNAL TRANSDUCTION PROTEIN-RELATED JGI ISS
PTHR24423:SF449Panther JGI ISS
PF00072PFAM Response regulator receiver domain JGI ISS
PF00249PFAM Myb-like DNA-binding domain JGI ISS
UniRef100_B9HJH2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Type-b response regulator (Fragment) n=1 Tax=Populus trichocarpa RepID=B9HJH2_POPTR SoyBaseE_val: 9.00E-74ISS
UniRef100_I1K5J6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1K5J6_SOYBN SoyBaseE_val: 6.00E-111ISS

Expression Patterns of Glyma08g05165
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g05165 not represented in the dataset
Glyma08g05165 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g05165
ParalogEvidenceComments
Glyma05g34516 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g05165 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g046800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g05165
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g05165
>Glyma08g05165.1   sequence type=CDS   gene model=Glyma08g05165   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAAAGTTTCCTCCGACGAGAAGGTTCTTTATCAATTCCCGGCAAATCTTAGGGTCCTTGCCGTTGATAATGACCCCTCAACTCTTGAGTTCATCAAGAACACATGCAGTCAATGCAAATACGAGGTTACCATACACACTGAATCTCCACTTGCATTGAATCTTGTGCGGGAAAAAAAAGATCGTATTGATGTGATACTCATCGAGGTTCATATGCCAACCATGAATGGGTATGAATTCCTTCAGCATGTCAGCAAGGAAATTGATGTTCCTGTTATTGTGATGTCTCTTGATTACAGCAAGGATACTGTGATGAAGGCTGTTCAACTTGGGGCGTGTGATTTTTGGATTAAACCTTTGCATGAGCATCAATTCAAGAATATGTGGACGCATGTTTCTAGGAAAGCCCTGAATGAAAATAAGATACAAAAGGGTTTTGGCAGCTTGGAAGATGATGGCAGGGGAAGAAAACTAGGGAATGATAATTCTGAATTTGCTTCTTTTGATGTCGTGAGAGACCAAAGCAATGGCAATAGCAGTTCCAGGGAAGCTGCTGCTGATGTTGATGAATCGGAGCATGAGCATTGTGGTCCCTCAACAAAGAAGCCCCGCGTAATATGGTTACCAGAACTGCATCGTAAATTCGTCAAGGCTGTCAATAAACTTGCCCTTGATCAGGCTGTGCCAAAGAGAATTCTTCAAGAGATGAATGTACCAGGTTTGACAAGACAGAATGTTGCTAGTCATTTACAGAAATATAGAAATTTTTTGAAGGAAAAATCTAGAGTGACACAGACACAGGAACACACTGAGATGCCATTGCCTAACATGGTTCCAGGGACTATAAAAAACAGGGTAGGTGCATGTGAAAGACACGCTGAACAAGCTTTGGCAGAATGTCTTTCTAACATTACCAATAATTTTCCTCATCCTCAGCCCATAAGGACTCAAGCTGATCCGTCTATATACGGAGCACGACCCCCATCTAATGCATTGGCTATTCAGAGAAGCAATGCGTTAGTGGGTTCATTGCAGCAGCAGCAGCAGCAGCTGTCACTGATCAATCAACAAATTTCTCCAATCATCTCTCGGCAATCTTCCATGATGATTTCTGGAAATCCAGCTTCTGTCTTTAGGAATAATGATTTCGGTTTACTGTCGCCTCAAACTAGTAATCCACTCAGCGTTGCTCAAATCCATGGTGGAAACACCACAGGTGGAAGCCGTCTTAATCGGTATACTGCTACTACAACTTCCATTACCCAACAGCTTCAAAATTCAAGTTTGACAAGTGGTGCTGTGAGATCTTTTCCTGCATCAGTGCCTCCCGATGGTTCACTCTACCAAGAATCTCCTAACATATCGGCAAGTGGTTTTAATAACCAATTTTTTTCCACAGATATAGATGATAACACAACAAATGAGGAGCTAAATTCAAGGAATAATCCAGAGAAGGATCACACGCTCTCAAAATGA
Predicted protein sequences of Glyma08g05165
>Glyma08g05165.1   sequence type=predicted peptide   gene model=Glyma08g05165   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKVSSDEKVLYQFPANLRVLAVDNDPSTLEFIKNTCSQCKYEVTIHTESPLALNLVREKKDRIDVILIEVHMPTMNGYEFLQHVSKEIDVPVIVMSLDYSKDTVMKAVQLGACDFWIKPLHEHQFKNMWTHVSRKALNENKIQKGFGSLEDDGRGRKLGNDNSEFASFDVVRDQSNGNSSSREAAADVDESEHEHCGPSTKKPRVIWLPELHRKFVKAVNKLALDQAVPKRILQEMNVPGLTRQNVASHLQKYRNFLKEKSRVTQTQEHTEMPLPNMVPGTIKNRVGACERHAEQALAECLSNITNNFPHPQPIRTQADPSIYGARPPSNALAIQRSNALVGSLQQQQQQLSLINQQISPIISRQSSMMISGNPASVFRNNDFGLLSPQTSNPLSVAQIHGGNTTGGSRLNRYTATTTSITQQLQNSSLTSGAVRSFPASVPPDGSLYQESPNISASGFNNQFFSTDIDDNTTNEELNSRNNPEKDHTLSK*






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