SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G29990 | AT | Annotation by Michelle Graham. TAIR10: prefoldin 6 | chr1:10507666-10508821 FORWARD LENGTH=129 | SoyBase | E_val: 1.00E-73 | ISS |
| GO:0006094 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gluconeogenesis | SoyBase | N/A | ISS |
| GO:0006096 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glycolysis | SoyBase | N/A | ISS |
| GO:0006457 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein folding | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0043622 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cortical microtubule organization | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016272 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: prefoldin complex | SoyBase | N/A | ISS |
| GO:0051082 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding | SoyBase | N/A | ISS |
| KOG3478 | KOG | Prefoldin subunit 6, KE2 family | JGI | ISS | |
| PTHR21431 | Panther | PREFOLDIN SUBUNIT 6 | JGI | ISS | |
| PF01920 | PFAM | Prefoldin subunit | JGI | ISS | |
| UniRef100_G7K0G0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Prefoldin subunit n=1 Tax=Medicago truncatula RepID=G7K0G0_MEDTR | SoyBase | E_val: 8.00E-77 | ISS |
| UniRef100_I1KQC4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KQC4_SOYBN | SoyBase | E_val: 2.00E-92 | ISS |
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Glyma08g05140 not represented in the dataset |
Glyma08g05140 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g046600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g05140.2 sequence type=transcript gene model=Glyma08g05140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTTTGGGCCGACCCAACAATAAGAAGAAGAAAAGCACAATGAACCGAAGAAGGTCAGAACTGAGAAACGCAATGAGTTCGTCGAACCTCAGAGATCTTCAACGCGAATTGGAGAACAAAGCCAATGATCTCAGCAAGCTTCAAAAGGAAATTGCGAAGAATCACCAAATGAGAAAGAAATACACGGTCCAGCTTGGCGAGAACGAGCTCGTCCTTAAGGAACTGGATTTATTGAAAGACGACGCAAATGTTTATAAGTTGATTGGGCCAGTACTTGTTAAGCAAGATTTGGCCGAGGCCAATGCAAATGTCCGCAAGAGAATCGAATACATCTCAGCTGAATTCGTCTGGATGCCACTGTTCAAGATTTGGAAGAGAAGCAAAATAGCAAGAAAGATACGATACTAAAATTGCAACAAAGGATTCAATCATTTCAGGCTGGGAAAGGCAAGGCGTAGTTTTCCCTCACATATTGTTCCAGGCATTGTGATTTAACCGTGCTACTGCTAAGGTTGGATGTGGATTTGTATTTTGTGCCTCTTTGTTTTGGACTGAAGTTGACTCTTAGGAATCTGTTACGGGAAACAGCTTGGAAATTAGACTGATATTAATATATTCCCTCCGTCCCTGCCTATTTATAAGACATGTTTTTTGTTTACCTTATTATAAGATTTTTTTAATCTCTCTTGTGTATTAATTATTTTGACTAAAATATCTTGAATTTTCTCTTTTTCTCTCCTATAGAGATT
>Glyma08g05140.1 sequence type=CDS gene model=Glyma08g05140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACCGAAGAAGGTCAGAACTGAGAAACGCAATGAGTTCGTCGAACCTCAGAGATCTTCAACGCGAATTGGAGAACAAAGCCAATGATCTCAGCAAGCTTCAAAAGGAAATTGCGAAGAATCACCAAATGAGAAAGAAATACACGGTCCAGCTTGGCGAGAACGAGCTCGTCCTTAAGGAACTGGATTTATTGAAAGACGACGCAAATGTTTATAAGTTGATTGGGCCAGTACTTGTTAAGCAAGATTTGGCCGAGGCCAATGCAAATGTCCGCAAGAGAATCGAATACATCTCAGCTGAATTGAAGCGTCTGGATGCCACTGTTCAAGATTTGGAAGAGAAGCAAAATAGCAAGAAAGATACGATACTAAAATTGCAACAAAGGATTCAATCATTTCAGGCTGGGAAAGGCAAGGCGTAG >Glyma08g05140.2 sequence type=CDS gene model=Glyma08g05140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACCGAAGAAGGTCAGAACTGAGAAACGCAATGAGTTCGTCGAACCTCAGAGATCTTCAACGCGAATTGGAGAACAAAGCCAATGATCTCAGCAAGCTTCAAAAGGAAATTGCGAAGAATCACCAAATGAGAAAGAAATACACGGTCCAGCTTGGCGAGAACGAGCTCGTCCTTAAGGAACTGGATTTATTGAAAGACGACGCAAATGTTTATAAGTTGATTGGGCCAGTACTTGTTAAGCAAGATTTGGCCGAGGCCAATGCAAATGTCCGCAAGAGAATCGAATACATCTCAGCTGAATTCGTCTGGATGCCACTGTTCAAGATTTGGAAGAGAAGCAAAATAGCAAGAAAGATACGATACTAA
>Glyma08g05140.1 sequence type=predicted peptide gene model=Glyma08g05140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNRRRSELRNAMSSSNLRDLQRELENKANDLSKLQKEIAKNHQMRKKYTVQLGENELVLKELDLLKDDANVYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDATVQDLEEKQNSKKDTILKLQQRIQSFQAGKGKA* >Glyma08g05140.2 sequence type=predicted peptide gene model=Glyma08g05140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNRRRSELRNAMSSSNLRDLQRELENKANDLSKLQKEIAKNHQMRKKYTVQLGENELVLKELDLLKDDANVYKLIGPVLVKQDLAEANANVRKRIEYISAEFVWMPLFKIWKRSKIARKIRY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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