Glyma08g05130 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g05130

Feature Type:	gene_model
Chromosome:	Gm08
Start:	3654157
stop:	3657622
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g05130

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G68050	AT	Annotation by Michelle Graham. TAIR10: flavin-binding, kelch repeat, f box 1 \| chr1:25508737-25510697 FORWARD LENGTH=619	SoyBase	E_val: 0	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0007623	GO-bp	Annotation by Michelle Graham. GO Biological Process: circadian rhythm	SoyBase	N/A	ISS
GO:0009637	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to blue light	SoyBase	N/A	ISS
GO:0009911	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of flower development	SoyBase	N/A	ISS
GO:0010468	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of gene expression	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0001047	GO-mf	Annotation by Michelle Graham. GO Molecular Function: core promoter binding	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG4693	KOG	Uncharacterized conserved protein, contains kelch repeat	JGI		ISS
PTHR23244	Panther	KELCH REPEAT DOMAIN	JGI		ISS
PTHR23244:SF107	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00646	PFAM	F-box domain	JGI		ISS
PF00989	PFAM	PAS fold	JGI		ISS
PF07646	PFAM	Kelch motif	JGI		ISS
UniRef100_B9MST1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Circadian clock-associated FKF1 n=1 Tax=Glycine max RepID=B9MST1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1KQC3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KQC3_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma08g05130

Locus	Gene Symbol	Protein Name
	FKF2	Flavin-binding Kelch Repeat F-Box 2 gene

Expression Patterns of Glyma08g05130

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g05130

Paralog	Evidence	Comments
Glyma05g34530	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g05130 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g046500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g05130

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g05130

Limit To All Plant Sequences

>Glyma08g05130.1   sequence type=CDS   gene model=Glyma08g05130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAGTAGTTGCTTGTGCTCACTCTTCATTTTTGAATCAGACATGGCCATGCCAAAAGAGAAAGAGGATGTTCAGAACAGTGGGAAGAGATTGAAATGTACGAGGAATGAAGAAGAAGAAAAAGAACAATATGAACAAGTTGAAGCTGATGAAGAAGAAGAAGAAGAAGAAGACAGTGAGCTTCCTCTAAAGCTAGGATTGTTCTTCTACCCAACAATACCCACTTCCTTTGTTGTATCTGATGCTCTTGAACCCGATTTTCCCATCATATATGTCAACAAGGTCTTTGAAATCGCCACTGGATATCGTGCTGACGAGGCCCTCGGTCGCAACTGTCGGTTCTTGCAGTATAGAGATCGTCGAGCTCAGAGGCGGCACCCTTTGGTGGATCCTGTTGTTGTGTCTGAGATTAGAAGATGTCTTGAGGAAGGTGTTGAGTTCCAAGGTGAACTTCTGAATTTCAGAAAGGATGGCACTCCTTTGGTGAACAGAGTGAGACTTACACTAATTCATGATGATGACGGGACTGTGACACACGTAATAGGTATCCAACTCTTTTCCGAGGCAAATATAGATCTGAACCGTGTCTCATATCCAGTCTTCAAAGAGACTTGCAATCAAGATTTTGACAAGAATGGTAAATATACTCCTAAGAGTGGACAATCATTGTACAGTCAGCACCAAGAGATGTGCAGCATTCTTCAGCTTTCTGATGAAGTCTTGGCTCACAACATTTTGTCACGCTTGACACCCAGGGATGTTGCATCCATTGGGTCTGTATGCAGGAGGGTCCGTCAATTAACAAAGAATGAGCATGTCAGGAAGATGGTATGTCAAAATGCATGGGGCAAAGAAGTGACGGGCACATTGGAACTGATGACCAAGAAGATGGGATGGGGTCGCCTGACTCGGGAACTTACCACTCTTGAAGCTGTTTGTTGGAGAAAACTGACAGTTGGAGGTGCAGTGGAGCCTTCACGCTGCAATTTCAGTGCTTGTGCTGCAGGAAACCGACTTGTATTGTTTGGAGGTGAAGGAGTGGATATGCAACCTATGGATGACACTTTTGTTCTAAATCTTGATGCTAAAAATCCAGAATGGCGCAGGGTTAGTGTGAAATCATCCCCACCCGGAAGGTGGGGCCACACGCTCTCGTGTTTAAATGGTTCTTGGTTGGTGGTTTTTGGTGGGTGTGGTAGGCAAGGATTGCTCAATGATGTGTTTGTGCTTGATTTGGATGCTCAACAGCCAACATGGAGGGAGGTTTGTGGTGGAACCCCACCACTTCCTAGATCATGGCACAGCTCTTGCACAATTGAAGGGTCCAAATTGGTTGTCTCCGGCGGGTGCACAGACACCGGGGTACTTCTTAGTGACACGTATTTACTGGACCTCACAACAGATAATCCAATATGGAGAGAAATTCCAACTTCATGGGCTCCTCCTTCTCGGTTGGGCCACTCACTCTCAGTCTATGGGAGGACAAAGATTCTCATGTTTGGTGGACTTGCCAAGAGTGGACACTTGCGGCTACGATCAGGTGAGGCTTATACAATTGACTTAGAAGATGAACAACCACAATGGAGGCAACTAGAATATAGCGCATTCACGGGTTTAGCCAGTCAAAGTGCTGTTGTTCCTCCTCCTAGGCTGGATCATGTTGCTGTCAGCATGCCTTGTGGGAGGATCATTATATTTGGAGGTTCCATTGCTGGTCTTCACTCACCATCTCAGCTCTTTCTGTTGGACCCTTCTGAAGAGAAACCATCCTGGAGGATCCTCAATGTTCCAGGGCAACCACCTAAATTTGCTTGGGGTCATAGCACTTGTGTGGTTGGAGGGACTAGGGTGTTGGTGTTGGGTGGACACACTGGGGAGGAATGGATACTGAATGAGTTGCACGAGTTATGCTTGGCAAGTCGACATGACTCTGACCTGTGA

Predicted protein sequences of Glyma08g05130

Limit To All Plant Sequences

>Glyma08g05130.1   sequence type=predicted peptide   gene model=Glyma08g05130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSSCLCSLFIFESDMAMPKEKEDVQNSGKRLKCTRNEEEEKEQYEQVEADEEEEEEEDSELPLKLGLFFYPTIPTSFVVSDALEPDFPIIYVNKVFEIATGYRADEALGRNCRFLQYRDRRAQRRHPLVDPVVVSEIRRCLEEGVEFQGELLNFRKDGTPLVNRVRLTLIHDDDGTVTHVIGIQLFSEANIDLNRVSYPVFKETCNQDFDKNGKYTPKSGQSLYSQHQEMCSILQLSDEVLAHNILSRLTPRDVASIGSVCRRVRQLTKNEHVRKMVCQNAWGKEVTGTLELMTKKMGWGRLTRELTTLEAVCWRKLTVGGAVEPSRCNFSACAAGNRLVLFGGEGVDMQPMDDTFVLNLDAKNPEWRRVSVKSSPPGRWGHTLSCLNGSWLVVFGGCGRQGLLNDVFVLDLDAQQPTWREVCGGTPPLPRSWHSSCTIEGSKLVVSGGCTDTGVLLSDTYLLDLTTDNPIWREIPTSWAPPSRLGHSLSVYGRTKILMFGGLAKSGHLRLRSGEAYTIDLEDEQPQWRQLEYSAFTGLASQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWILNELHELCLASRHDSDL*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain