Glyma08g05110 - SoyBase

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Report for Sequence Feature Glyma08g05110

Feature Type:	gene_model
Chromosome:	Gm08
Start:	3642268
stop:	3643767
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g05110

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G44020	AT	Annotation by Michelle Graham. TAIR10: Mitochondrial transcription termination factor family protein \| chr2:18217737-18219260 REVERSE LENGTH=507	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG1267	KOG	Mitochondrial transcription termination factor, mTERF	JGI		ISS
PTHR13068	Panther	CGI-12 PROTEIN-RELATED	JGI		ISS
PTHR13068:SF3	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF02536	PFAM	mTERF	JGI		ISS
UniRef100_I1KQC1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KQC1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_O80572	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Arabidopsis thaliana RepID=O80572_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g05110

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g05110

Paralog	Evidence	Comments
Glyma05g34550	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g05110 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g046300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g05110

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g05110

Limit To All Plant Sequences

>Glyma08g05110.1   sequence type=CDS   gene model=Glyma08g05110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTCGCAAGAAGAAAAGTCCTTAACTTGTTATCAACCTTAATTCCCCACCACGCCAATGCATTTTCTCGTCACCCGCACGACCACAACCCCTTTACCAAAATCCCCAAAACCCTTTTTAGGGTTTATTATGGAACCCAATCATCAGCATCGAAACTCCCCGAATATGAGATGCCATCGGTGACGTGGGGCGTGATCCAGGGTCGCAAGGAGAAGCTCGTTTCGCGAGTAATCATCTTCGATTACCTCAAGGGTTTGGGAATCATCCCCGACGAATTGCACGACCTCGAGCTTCCCTCCACCGTCGACGTCATGCGCGAGCGCGTCGAGTTTCTCCAGAAATTAGGTCTCACCGTCGACGACATCAACAACTACCCTCTAATGTTGGGGTGCAGTGTCAGAAAAAACATGATCCCCGTCTTGGGGTACTTGGAAAAAATTGGGATCGCAAGGCCCAAGCTTGGTGGATTTGTTAAGAATTACCCGCAGGTATTGCATGCTAGTGTCATTGTTGAGCTTGCTCCTGTTGTTAAGTTCCTTAGGGGGCTTGATGTGGAGAAAGATGATATTGGCTATGTGTTGCAAAAGTACCCTGAACTTCTTGGCTTCAAGCTTGAGGGTACTATGAGCACTTCAGTGGCTTATCTTGTTAGTATTGGTGTGAACCCTAGAGATATTGGTCCAATGGTCACTCAGTATCCTTATTTATTAGGGATGAGAGTTGGGACTGTGATAAAGCCGATGATTGATTACTTGGTCGATTTAGGGCTGCCGAAGAAGGTTTTGGCCAGGATGTTGGAGAAGAGAGCTTATGTTCTTGGCTATGATCTTGAAGAGACTGTGAAACCCAATGTGGAATGTTTGATTAGCTTTGGTGTTGGGAGGGATTGTTTGGCTTCGATTATTGCTCAATATCCGCAGATTCTCGGGCTGCCTCTTAAGGCTAAGTTATCCACGCAGCAGTACTTTTTCAGTTTGAAGCTTAAGGTTGACCCTGAAGGGTTTGCACGCGTGGTGGAGAACATGCCACAGGTGGTTAGTCTCCACCAACATGTGATTATGAAGCCGGTTGAGTTTCTCCTTGGAAGGACGATACCGGCACAGGACGTGGCAAGTATGGTGGTCAAGTGTCCTCAGTTGGTGGCACTGAGAGTTGAGCTCATGAAGAACAGCTATTACTTCTTCAAGAGTGAGATGGGGAGGCCCTTGCAAGAGCTTGTGGAATTCCCTGAGTATTTTACTTATAGTTTGGAGTCCAGGATCAAACCCAGATACCAGAGGCTGAAGAGTAAAGGGATAAGGTGTTCCTTGAATTGGATGCTGAATTGTAGTGACCAGAGGTTTGAAGAGAGGTTGCAGGGTCATTACATTGAAACTGAGAGTGTAGGCCCCAGATTCTGTATGGGAGGGAAATTAGAGCTACCAGGGAATGGCCTAGTGTCAGATGAGGAAGAGGAGAGTGATGATGAACTATTATACAGACGAACTGTTTCTCTTTAG

Predicted protein sequences of Glyma08g05110

Limit To All Plant Sequences

>Glyma08g05110.1   sequence type=predicted peptide   gene model=Glyma08g05110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVARRKVLNLLSTLIPHHANAFSRHPHDHNPFTKIPKTLFRVYYGTQSSASKLPEYEMPSVTWGVIQGRKEKLVSRVIIFDYLKGLGIIPDELHDLELPSTVDVMRERVEFLQKLGLTVDDINNYPLMLGCSVRKNMIPVLGYLEKIGIARPKLGGFVKNYPQVLHASVIVELAPVVKFLRGLDVEKDDIGYVLQKYPELLGFKLEGTMSTSVAYLVSIGVNPRDIGPMVTQYPYLLGMRVGTVIKPMIDYLVDLGLPKKVLARMLEKRAYVLGYDLEETVKPNVECLISFGVGRDCLASIIAQYPQILGLPLKAKLSTQQYFFSLKLKVDPEGFARVVENMPQVVSLHQHVIMKPVEFLLGRTIPAQDVASMVVKCPQLVALRVELMKNSYYFFKSEMGRPLQELVEFPEYFTYSLESRIKPRYQRLKSKGIRCSLNWMLNCSDQRFEERLQGHYIETESVGPRFCMGGKLELPGNGLVSDEEEESDDELLYRRTVSL*

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