Glyma08g05100 - SoyBase

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Report for Sequence Feature Glyma08g05100

Feature Type:	gene_model
Chromosome:	Gm08
Start:	3635846
stop:	3640958
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g05100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G24764	AT	Annotation by Michelle Graham. TAIR10: microtubule-associated proteins 70-2 \| chr1:8760001-8763256 REVERSE LENGTH=634	SoyBase	E_val: 0	ISS
GO:0007010	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005874	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: microtubule	SoyBase	N/A	ISS
GO:0008017	GO-mf	Annotation by Michelle Graham. GO Molecular Function: microtubule binding	SoyBase	N/A	ISS
PF07058	PFAM	Myosin II heavy chain-like	JGI		ISS
UniRef100_G7LBD9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Microtubule associated protein Type 2 n=1 Tax=Medicago truncatula RepID=G7LBD9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KQC0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KQC0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g05100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g05100

Paralog	Evidence	Comments
Glyma05g34560	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g05100 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g046200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g05100

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g05100

Limit To All Plant Sequences

>Glyma08g05100.1   sequence type=CDS   gene model=Glyma08g05100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGAGGTTTCCGGCGAGGGGGGAGCAGAGGCGACGGTGGCCACGCCGGTGCTGCCGTTGGCGGTGTCTGGATCGTTCAAGGAAGGGAAGAGCTCGTCGCGGAGGCGCGCGCATTCGATGAGGCCGAGCCTCGACGCGGACGAGTTCATGAACCTGTTGCACGGTTCGGATCCGGTGAAGGTGGAGCTCAATCGGTTGGAGAATGAAGTGAGAGATAAGGACAGAGAATTATCAGAAGCGCAGGCGGAGATCAAAGCCTTGAGGCTCTCCGAACGACTCAGAGAAAAGGCCGTTGAAGAGCTTACTGAAGAATTGTCAAGGGTTGAGGGGAAGCTGAAGTTAACAGAATCTCTTCTAGAAAGCAAAAATCTTGAAATAAAGAAAATTAATGATGAAAAGAAAGCATCGATGGCAGCTCAGTTTGCAGCTGAAGCCACTCTTCGAAGGGTCCATGCTGCTCAGAAGGATGATGACATGCCTCCTATAGAGGCCATTCTTGCTCCTCTGGAGGCTGAACTTAAGCTTGCGCGGCAAGAGATAGCAAAACTTCAAGATGATAACAAAGCTTTAGACCGTCTCACCAAATCTAAAGAAGCAGCACTTATTGAAGCTGAGAAGACTGTACAGATTGCCTTGGCTAAGGCCTCCATGGTGGATGATCTCCAAAATAAAAATCAAGAGCTAATTAAACAGATTGAGATTTGCCAGGAAGAAAATAAAATTTTGGACAAAATGCATAGACTGAAGGTGGCAGAGGTTGAAAAGCTTACCCAAACCGTGAGAGAACTAGAAGAGGCTGTCCTTGCAGGTGGTGCAGCTGCAAATGCTGTGAGAGATTATCAACGGAAATTTCAAGAAATGAATGAAGAAAGAAAAACTCTTGACCGGGAGTTAGCTCGTGCCAAGGTAACAGCAAACAGAGTAGCTGTAGTGGTTGCAAATGAATGGAAAGATGCTAATGACAAAGTGATGCCTGTGAAACAATGGCTTGAAGAACGACGATTCTTGCAGGGAGAGATGCAGCAACTTCGGGACAAGCTTGCTATAACTGAGCGAACTGCAAAGTCTGAAGCACAGTTAAAAGAAAAATATCAATTAAGGCTTAAAGTGCTACAGGAGAGTTTGAGAGAAACTTCTAACAGTATTAATCGCGGCACCTCAGAGGGAAGATGTGTTAGCAATGGGCCTTCTCGACGTCAATCCCTAGGTGGAGCTGATAACATCTCAAAACTAACATCTAATGGGTTTTTGAAGAGATCACCGTCCACTCAAATTAGGTCTTCTGTGTCTTCAAGCACAGTTTTGAAGCATGCTAAAGGCACATCTAAATCATTTGATGGTGGTACAAGGTCATTAGAAAGGAGTAAAATTCTTCTAAATGGAAAACCTCCAAGTTACTCATTCAACCAGTCTTCCGAAGGAACCAAAGTCAGGGAAGAAAAAGATAAATGGAAAGGAAATTCAGATGATAAACCAAATGACTTCCCAACAGTGGATACAGACGATAGTGTTCCAGGAGTTTTGTATGATTTGCTGCAGAAAGAGGTCTTAGCCTTGAGGAAAGTTGGTCATGAGAAAGATCAAAGCCTAAAAGATAAAGATGATGCCATTGAAATGCTGGCAAAGAAAGTAGATACATTGACCAAAGCCATGGAAGTTGAGGCAAAGAAGATGAGAAGAGAAGTAGCTTCCATGGAGAAGGAGGTAGCTGCAATGCGTGTTGAAAAAGAACAAGACACAAGAGCAAAGCGTTTCAGTAATGTAAAGGGCCCTGTGAACAGTGCTCAGCATCAGCTTGTTTCTGGAAGAAATGTGGCACGGGGAGGATTAACACGCAGCACGCAATGA

Predicted protein sequences of Glyma08g05100

Limit To All Plant Sequences

>Glyma08g05100.1   sequence type=predicted peptide   gene model=Glyma08g05100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEVSGEGGAEATVATPVLPLAVSGSFKEGKSSSRRRAHSMRPSLDADEFMNLLHGSDPVKVELNRLENEVRDKDRELSEAQAEIKALRLSERLREKAVEELTEELSRVEGKLKLTESLLESKNLEIKKINDEKKASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALIEAEKTVQIALAKASMVDDLQNKNQELIKQIEICQEENKILDKMHRLKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKFQEMNEERKTLDRELARAKVTANRVAVVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDKLAITERTAKSEAQLKEKYQLRLKVLQESLRETSNSINRGTSEGRCVSNGPSRRQSLGGADNISKLTSNGFLKRSPSTQIRSSVSSSTVLKHAKGTSKSFDGGTRSLERSKILLNGKPPSYSFNQSSEGTKVREEKDKWKGNSDDKPNDFPTVDTDDSVPGVLYDLLQKEVLALRKVGHEKDQSLKDKDDAIEMLAKKVDTLTKAMEVEAKKMRREVASMEKEVAAMRVEKEQDTRAKRFSNVKGPVNSAQHQLVSGRNVARGGLTRSTQ*

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