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Report for Sequence Feature Glyma08g05090

Feature Type:gene_model
Chromosome:Gm08
Start:3632272
stop:3634295
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G57490AT Annotation by Michelle Graham. TAIR10: Ribosomal protein S5 family protein | chr3:21279824-21280887 REVERSE LENGTH=276 SoyBaseE_val: 6.00E-72ISS
GO:0001510GO-bp Annotation by Michelle Graham. GO Biological Process: RNA methylation SoyBaseN/AISS
GO:0006412GO-bp Annotation by Michelle Graham. GO Biological Process: translation SoyBaseN/AISS
GO:0009220GO-bp Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005840GO-cc Annotation by Michelle Graham. GO Cellular Compartment: ribosome SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0015935GO-cc Annotation by Michelle Graham. GO Cellular Compartment: small ribosomal subunit SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0022627GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosolic small ribosomal subunit SoyBaseN/AISS
GO:0003723GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA binding SoyBaseN/AISS
GO:0003735GO-mf Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome SoyBaseN/AISS
PTHR13718Panther RIBOSOMAL S SUBUNIT JGI ISS
PTHR13718:SF51Panther OS07G0207400 PROTEIN (FRAGMENT) JGI ISS
PF03719PFAM Ribosomal protein S5, C-terminal domain JGI ISS
UniRef100_G7LAL7UniRef Annotation by Michelle Graham. Most informative UniRef hit: 40S ribosomal protein S2 n=1 Tax=Medicago truncatula RepID=G7LAL7_MEDTR SoyBaseE_val: 6.00E-83ISS
UniRef100_I1KQB9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KQB9_SOYBN SoyBaseE_val: 4.00E-96ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g05090 not represented in the dataset

Glyma08g05090 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma05g34570 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g046100 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma08g05090.1   sequence type=CDS   gene model=Glyma08g05090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGATCATGCCCGTCCAGAAACTCTCTGTTATTCCTGTCAGGAGAGGGTATTGGGGTAACAAGATCGGAAAGCCCCACAACGTTCCTTTCAAGGTTACCGGCAAGTGTGGTTCTGTTACCGTTCGCATGGTCCCCGCTCCTCGTGGGTCCGGAATTGTTGCTATTAGGGTTCCAAAGAAGGTCTTGCAGTTCGCTGGAATCGATGGTGTCTTCACTTCCTCAAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAGGCTACTTTTGACTGTTTGCTGAAAAGCTACGGTTTTCTAACACTGGAGTTCTGGAAGGAGACTCGGTTCTCCAAATCACCATTCCAAGAGTACACAGATCTATTGGCAAAGCCAACAGGAAAGGCCCTGATCCTCGAGGAGGAAAGGGTGGAGGCTTGA

>Glyma08g05090.1   sequence type=predicted peptide   gene model=Glyma08g05090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKIMPVQKLSVIPVRRGYWGNKIGKPHNVPFKVTGKCGSVTVRMVPAPRGSGIVAIRVPKKVLQFAGIDGVFTSSRGSTKTLGNFVKATFDCLLKSYGFLTLEFWKETRFSKSPFQEYTDLLAKPTGKALILEEERVEA*







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