Glyma08g05080 - SoyBase

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Report for Sequence Feature Glyma08g05080

Feature Type:	gene_model
Chromosome:	Gm08
Start:	3626438
stop:	3631046
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g05080

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G68070	AT	Annotation by Michelle Graham. TAIR10: Zinc finger, C3HC4 type (RING finger) family protein \| chr1:25515412-25516767 REVERSE LENGTH=343	SoyBase	E_val: 9.00E-165	ISS
GO:0006661	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol biosynthetic process	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR11203	Panther	CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR	JGI		ISS
PTHR11203:SF27	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI		ISS
UniRef100_G7LAL6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: E3 ubiquitin-protein ligase n=1 Tax=Medicago truncatula RepID=G7LAL6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KQB8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KQB8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g05080

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g05080

Paralog	Evidence	Comments
Glyma05g34580	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g05080 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g046000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g05080

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g05080

Limit To All Plant Sequences

>Glyma08g05080.1   sequence type=CDS   gene model=Glyma08g05080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCATCGCCAAACTCCGCCCGTCAGCCCCACGCGCCGCTCCTTCTCCCGCGCCCCGATGCCGCCGCCCGCCTCCCCGTCCTGGCGCTCCTCCTCGGCCGCCGCGGCCACTCCGTCATGGTCCGGGAGACGGCGGCGCGTGAGCTGGAGGAGCGGCGCGCCGACTGGACCTACTCGAAGCCGGTGGTGGCGCTGGACATGACGTGGAACATGGCCTTCGTCGTGGTCTCGGCGGTCATGCTCGCCTGCACCGTCAAGGAGAACCCCAACACGCCGATCCGCTGGTGGATCTGCGGCTACGCGCTGCAGTGCCTCCTCCACGTGGCCCTCGTGTGGCTCGAGTACCGTAGGAGGAACGACGCGCCCGGGGACGAGGATTCTGCTGCCAACCTAGATTACGACGACGTCAACGACAGCGACGAGGACGATGTTGGAACCTCTGGGAGTTCCTCTTCCACCGGATTCACAAAACGATGTGCATCATTGAATACCATGATTTCATTACTTTGGTGGATGGTGGGCTTTTACTGGGTTGTCTCTGGTGGTGATATTCTTCTGCAAGATGCTCCACGTTTATACTGGTTGACTGTTGTCTTTCTAGCATTTGATGTCTTCTTTGCTATCTTTTGTGTTGTTTTGGCATGCTTGATTGGAATTGCCCTCTGTTGTTGTTTGCCCTGTATTATTGCTATTCTCTATGCTGTTGCAGGACAGGAGGGTGCATCAGAATCGGATCTCAGTATACTTCCAAAATACAGATTTCAAATGTTAAGCAATGAGGAAACACCTGGTGAGGGAGGGGGAGGATCAATGATTCCTATGGAGACCAGCAATGGTTACTCGGTGAATGAACGAACACTTTCACCTGAGGATGCAGAATGCTGTATATGCATCTCTTCCTATGAGGATGGAGCTGAACTTCACGTTCTCCCTTGTAACCATCATTTCCACTCTACGTGCATAGTGAAATGGTTAAAGATGAATGCAACTTGTCCTCTTTGCAAGTACAATATTCTCAAGGGAAATGAACAGGTGTGA

Predicted protein sequences of Glyma08g05080

Limit To All Plant Sequences

>Glyma08g05080.1   sequence type=predicted peptide   gene model=Glyma08g05080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSPNSARQPHAPLLLPRPDAAARLPVLALLLGRRGHSVMVRETAARELEERRADWTYSKPVVALDMTWNMAFVVVSAVMLACTVKENPNTPIRWWICGYALQCLLHVALVWLEYRRRNDAPGDEDSAANLDYDDVNDSDEDDVGTSGSSSSTGFTKRCASLNTMISLLWWMVGFYWVVSGGDILLQDAPRLYWLTVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASESDLSILPKYRFQMLSNEETPGEGGGGSMIPMETSNGYSVNERTLSPEDAECCICISSYEDGAELHVLPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV*

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