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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G14850 | AT | Annotation by Michelle Graham. TAIR10: nucleoporin 155 | chr1:5116921-5123259 REVERSE LENGTH=1464 | SoyBase | E_val: 0 | ISS |
| GO:0001510 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA methylation | SoyBase | N/A | ISS |
| GO:0006913 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleocytoplasmic transport | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005643 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nuclear pore | SoyBase | N/A | ISS |
| GO:0005730 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleolus | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0017056 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: structural constituent of nuclear pore | SoyBase | N/A | ISS |
| KOG1900 | KOG | Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) | JGI | ISS | |
| PTHR10350 | Panther | NUCLEAR PORE COMPLEX PROTEIN | JGI | ISS | |
| PTHR10350:SF6 | Panther | NUCLEOPORIN 155 | JGI | ISS | |
| PF03177 | PFAM | Non-repetitive/WGA-negative nucleoporin C-terminal | JGI | ISS | |
| PF08801 | PFAM | Nup133 N terminal like | JGI | ISS | |
| UniRef100_G7LAL2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nuclear pore complex protein Nup155 n=1 Tax=Medicago truncatula RepID=G7LAL2_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KQB7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KQB7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g05070 not represented in the dataset |
Glyma08g05070 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g34600 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g045900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g05070.1 sequence type=CDS gene model=Glyma08g05070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGTGGGAAGACGAGATTGTGATGCGTGATGTCACGAATGCGGGGCTTGTTGTCAGCGATCGCATTGGTCGCGAAGTTTCGTCTCAGCTCGACCTCGAAGAAGCTCTAGAAGCTTCCAGATACGCTAGCCACCCTTATTCCACTCACCCCCGAGAGTGGCCCCCTTTAGTTGAGGTGGTGAATACCTGGGAGTTGCCTCCCGTGCTCATTGAAAGATACAATGCAGCTGGTGGGGAAGGAACTGCTTTTTGTGGAATATTTCCTGAAATACGAAGGGCATGGGCATCTGTGGACAATTCATTGTTTCTTTGGCGTTTTGATAAGTGGGATGGCCAATGTCCTGAATTTAGTGGGGAAGAACAAGCTATTTGTGCAGTTGGTCTTGCAAAATCAAAACCTGGAGTTTTTGTTGAAGCTATCCAATATCTTTTAGTTTTAGCGACACCTGTTGAGTTAATTTTAGTAGGAGTATGCTGCTCTGGAGGAGCAGATGGTTCAGATCCATTTGCAGAAGTTACATTGCAGCCATTGCCAGAGCATACAATACCTTCTGATGGGGTTACAATGACTTGTGTAGCATGTACTGATAAGGGCCGCATTTTCCTCGCTGGTCGGGATGGCCACATATATGAGATTCTGTATTCAACTGGTTCTGGATGGCAAAAACGGTGCAGAAAAATCTGCATCACTGCTGGTTTAGGAAGTGTAATTTCAAGATGGGTTATACCAAATGTATTCAATTTTGGAGCTGTTGACCCCATTGTTGAAATGGTTTTCGACAACGAGAGACAAATATTGTATGCACGAACTGAAGAGATGAAGCTACAAGTTTATGTTCTAGGACCAAATGGTGATGGCCCATTAAAGAAAGTAGCTGAAGAAAGAAATCTTGTCAATCAGAGGGATGCACATTATGGTGCTAGACAATCCACAGGGTCAAGAGTCTCAAGTCGATCTCCAAAGCCATCTATTGTTTGCATCTCACCTTTATCTACACTTGAATCCAAGTGGCTACATCTTGTTGCTGTTTTATCTGATGGCAGAAGGATGTACCTATCTACCTCTCCTTCTAGTGGAAGCTTGACTGGGTTCAACACCAACCACCACAAGCCTAGCTGTTTAAAGGTTGTCACTACAAGGCCTGCTCCTCCTTGGGGTGTTAGTGGTGGTCTCACCTTTGGAGCCATGGCTCTTGCTGGTAGACCTCAGAATGAGGATCTCTCCCTGAAAGTTGAGGCAGCTTATTATTCTGCTGGAACCCTTATACTTTCTGATGCATCACCTTCTACCATGCCTTCACTCCTTGTTTTGAACAGGGATTCAAGCACGCAATCATCGCCGTCAGGTAATCTAGGAACAAGTACGAGGAGTTCCCGGGCATTAAGGGAGTCCGTATCTTCCTTACCAGTTGAAGGACGAATGCTTTCTGTGGCAGATGTTTTACCTTTGCCAGATACCGCAGCTACTGTGCAATCTCTATATTCGGAAATTGAGTTTGGTGGTTATGAGAGCTCTATGGAATCATGTGAAAGGGTGTCTGGCAAACTATGGGCCAGAGGAGATCTTGCAACCCAACATATACTACCAAGAAGAAGGATTGTTGTCTTCAGCACCATGGGCATGATGGAAATTGTTTTTAACAGGCCACTGGACATTATAAGGCGGCTATTGGAATCCAACTCTCCACGATCAGTTTTAGAAGATTTCTTCAATCGTTTTGGTGCAGGTGAGGCAGCTGCAATGTGTCTAATGCTAGCTGCAAGAATAGTGCATTCTGAAAACCTTATCAGCAATGTTATTGCTGAGAAGGCAGCTGAAGCTTTTGAGGACCCAAGAGTTGTTGGCATGCCACAACTTGAAGGCAGTAATGCATTATCAAACACAAGAAGTGCTGCTGGTGGATTTAGCATGGGCCAGGTTGTTCAGGAGGCTGAGCCTGTTTTTTCAGGTGCACATGAAGGGCTCTGTCTGTGTTCGTCTAGATTACTTTTTCCTCTGTGGGAACTTCCTGTAATGGTTGTAAAGGGAAGTTTAGGCCCTTCAGGCACTCTATCTGAAAATGGAGTAGTTGTGTGCAGACTCTCTGTTGGGGCTATGCAAGTCCTTGAACAGAAACTCCGATCTTTGGAGAAATTCTTAAGATCTAGAAGGAACCAGAGGAGGGGACTTTATGGCTGTGTAGCAGGTTTAGGAGATCTGAGTGGTTCGATTCTGTATGGTAATGGTTCGGCATTAGGAGTTGGGGATCGAAATATGGTAAGGAACTTATTTGGTGCATATTCCAGAAATATGGAGTCCAATGGTGGCATAACAACTAATAAACGGCAAAGGTTGCCATATAGTCCTGCTGAATTAGCTGCCATGGAGGTGAGGGCAATGGAGTGCATTAGGCAGTTGCTCCTTAGATCTGGTGAAGCCCTATTTTTGCTTCAACTTCTTTCACAGCATCATGTGACTCGATTGATTCAGGGATTTGATTCTAACCTTCAACAAGCATTAGTTCAGTTGACATTTCATCAACTAGTTTGTTCTGAGGAGGGAGACCATCTTGCTACAAGACTTATATCTGCTCTCATGGAGTATTATACTGGTCCTGATGGCAGGGGCACTGTAGATGACATTAGTAGGAGATTGAGAGATGGTTGTCCAAGCTACTATAAGGAGTCTGATTACAAATTCTTCCTAGCCGTGGAAGCCCTGGAGAGATCTGCTATGACCATAGATGCCGAGGACAAGGAGAATCTTGCAAGGGAAGCATTTAATTCCTTAAGTAAAGTTCCAGAGTCTGTGGACCTACGAACTGTTTGCAAACGTTTTGAGGATTTAAGGTTTTATGAAGCTGTAGTGCGCTTACCTCTACAAAAGGCACAGGCTCTTGACCCTGCAGGCGATGCTTATAATGATGATATTGATGCAACTGTCAGAGAGCAAGCACTTGCTCAGCGGGAGCTGTGTTATGAAATAATTATCAGTGCTTTGCGGTCTCTGAAAGGTGACAACTTACAGAGGGAATTTGGGACTCCTATTAAATCAACTGCTTCACAATCTGCTCTTGATCCAGCCTCTCGGAAAAAATATATATGTCAAATTGTTCAGCTGGGTGTCCAATCACCTGACAGAATTTTCCATGAGTATCTTTACCAGGCTATGATTGATTTAGGTCTTGAGAATGAATTGCTAGAGTATGGAGGTCCTGATCTGTTGCCATTTTTGCAAAGTGCTGGTCGTAATTCTATACACGAGGTTCGTGCTGTGACGGCCACAACTTCTCCAGTGGGGCAATCAGGAGCACCTATGTCATCTAATCAAGTCAAGTACTATGAACTTTTGGCACGGTATTATGTCTTGAAACGCCAACATATGCTTGCAGCTCATGCATTGCTTAGACTAGCTGAAAGGCGTTCTACTGATGGAGTTCCTACTCTTGAACAGAGGTGTCAATACCTAAGTAATGCAGTTCTACAGGCAAAAAATGCAACTAATAGTGATGGGTTAGTAGGTTCTGGTCGAATTTCCATTGACAGTGGGTTCCTAGATTTGCTTGAAGGGAAGCTCGCTGTTCTTTGGTTCCAGATAAAAATCAAAGAAGAACTAGAGTCTATGGCTTCCAGGTCTGATGTTTTACCTGGCACATCAGAGTCTGCCGAAAATGGTGTAGTCCCTGAGGGAAGTTCTACTGCTGATGCTAATTTTGCAAATGCAACACGAGAGAAGGCTAAAGAGCTAGCTTCAGATGTAAAGAGCATAACCCAGTTATATAATGAATATGCTGTTCCCTTTGGGCTCTGGGAGATATGCCTGGAGATGCTGTACTTTGCCAATTATTCTGGTGATACTGACAGCAGCATTGTCAGAGAGACATGGGCTAGACTTATGGATCAAGCTATATCAAGAGGGGGTATTGCTGAAGCTTGCTCGGTACTGAAGAGGGTCGGGCCCCGCATTTATCCTGGTGATGGAGCTGTTTTACCACTTGATATTATTTGTCTTCACCTAGAGAAGGCTGGACTGGAGAGGTTAAATTCAGGGGTTGAAGCTGTTGGAGATGAAGATGTTGCAAGAGCCCTTGTTTCTGCTTGTAAGGGTGCCGCTGAACCTGTATTAAATGCATACGACCAATTGTTATCAAATGGGGCTATTCTGCCATCCCCAAGTGTTAGATTACGTATGCTGAGATCGGTTCTAGTGGTACTTCGAGAGTGGGCAATGTCTGTATATTCACAAAGAATGGGTAGCAGTAGTGCCACTGGGCATTCCTTAATACTAGGTGGAGGATTCTCAACGGAACGTACTATTGCTAGCCAAGGAATCCGGGACAAGATCACAAGTGCAGCAAACAGGTATATGACTGAAGTGCGGAGGTTAGCCCTTCCACAGAACCAAACAGAACATGTCTACCGAGGTTTTAGAGAACTTGAAGAATCGTTTATAAGCCAACATTCATTTGATCGATTTTGA
>Glyma08g05070.1 sequence type=predicted peptide gene model=Glyma08g05070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSWEDEIVMRDVTNAGLVVSDRIGREVSSQLDLEEALEASRYASHPYSTHPREWPPLVEVVNTWELPPVLIERYNAAGGEGTAFCGIFPEIRRAWASVDNSLFLWRFDKWDGQCPEFSGEEQAICAVGLAKSKPGVFVEAIQYLLVLATPVELILVGVCCSGGADGSDPFAEVTLQPLPEHTIPSDGVTMTCVACTDKGRIFLAGRDGHIYEILYSTGSGWQKRCRKICITAGLGSVISRWVIPNVFNFGAVDPIVEMVFDNERQILYARTEEMKLQVYVLGPNGDGPLKKVAEERNLVNQRDAHYGARQSTGSRVSSRSPKPSIVCISPLSTLESKWLHLVAVLSDGRRMYLSTSPSSGSLTGFNTNHHKPSCLKVVTTRPAPPWGVSGGLTFGAMALAGRPQNEDLSLKVEAAYYSAGTLILSDASPSTMPSLLVLNRDSSTQSSPSGNLGTSTRSSRALRESVSSLPVEGRMLSVADVLPLPDTAATVQSLYSEIEFGGYESSMESCERVSGKLWARGDLATQHILPRRRIVVFSTMGMMEIVFNRPLDIIRRLLESNSPRSVLEDFFNRFGAGEAAAMCLMLAARIVHSENLISNVIAEKAAEAFEDPRVVGMPQLEGSNALSNTRSAAGGFSMGQVVQEAEPVFSGAHEGLCLCSSRLLFPLWELPVMVVKGSLGPSGTLSENGVVVCRLSVGAMQVLEQKLRSLEKFLRSRRNQRRGLYGCVAGLGDLSGSILYGNGSALGVGDRNMVRNLFGAYSRNMESNGGITTNKRQRLPYSPAELAAMEVRAMECIRQLLLRSGEALFLLQLLSQHHVTRLIQGFDSNLQQALVQLTFHQLVCSEEGDHLATRLISALMEYYTGPDGRGTVDDISRRLRDGCPSYYKESDYKFFLAVEALERSAMTIDAEDKENLAREAFNSLSKVPESVDLRTVCKRFEDLRFYEAVVRLPLQKAQALDPAGDAYNDDIDATVREQALAQRELCYEIIISALRSLKGDNLQREFGTPIKSTASQSALDPASRKKYICQIVQLGVQSPDRIFHEYLYQAMIDLGLENELLEYGGPDLLPFLQSAGRNSIHEVRAVTATTSPVGQSGAPMSSNQVKYYELLARYYVLKRQHMLAAHALLRLAERRSTDGVPTLEQRCQYLSNAVLQAKNATNSDGLVGSGRISIDSGFLDLLEGKLAVLWFQIKIKEELESMASRSDVLPGTSESAENGVVPEGSSTADANFANATREKAKELASDVKSITQLYNEYAVPFGLWEICLEMLYFANYSGDTDSSIVRETWARLMDQAISRGGIAEACSVLKRVGPRIYPGDGAVLPLDIICLHLEKAGLERLNSGVEAVGDEDVARALVSACKGAAEPVLNAYDQLLSNGAILPSPSVRLRMLRSVLVVLREWAMSVYSQRMGSSSATGHSLILGGGFSTERTIASQGIRDKITSAANRYMTEVRRLALPQNQTEHVYRGFRELEESFISQHSFDRF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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