Report for Sequence Feature Glyma08g05000
Feature Type: gene_model
Chromosome: Gm08
Start: 3577537
stop: 3579403
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g05000
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G01670 AT
Annotation by Michelle Graham. TAIR10: nudix hydrolase homolog 17 | chr2:296889-297818 REVERSE LENGTH=182
SoyBase E_val: 2.00E-79 ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0016787 GO-mf
Annotation by Michelle Graham. GO Molecular Function: hydrolase activity
SoyBase N/A ISS
KOG2839
KOG
Diadenosine and diphosphoinositol polyphosphate phosphohydrolase
JGI ISS
PTHR12629 Panther
DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE
JGI ISS
PF00293 PFAM
NUDIX domain
JGI ISS
UniRef100_C6T3J9 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T3J9_SOYBN
SoyBase E_val: 3.00E-121 ISS
UniRef100_G7LAJ8 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Nudix hydrolase n=1 Tax=Medicago truncatula RepID=G7LAJ8_MEDTR
SoyBase E_val: 3.00E-101 ISS
Expression Patterns of Glyma08g05000
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma08g05000
Paralog Evidence Comments
Glyma05g34670 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g05000 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g045200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g05000
Transcripts of Glyma08g05000
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g05000.2 sequence type=transcript gene model=Glyma08g05000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
GCTTATAACACCCAAAATTCTCAACGCTTATATTCTATATATAGGTTCCTCTTGTCACTCTTTATCTCCACCCTTTATTCTCTTACGTCTCCAACTAATCATACAGATCGATAATCATAATCATATCTATAGCTAATTAACTTAATTATTTTCATCCCTCTACTCTTCTTCTCTCCTCTAAACTCTCTTTTCCATTCTTGCTTCCTTTGTGGGTTGTTTGAGTTTTCTTTCCTTCAATTTAATTGAAAGATGGCTTGCTTGGTATCTCGCTCGGGAAGGGAATTGCAGAGGTACAACAACATGGGTGGCCGGCAAGTTGTTGGGTGCATACCTTATAGATATAAACAAGACATAGAGGGTAAAATGAGCAACGAATTGGAAGTACTAGTGGTTAGTTCACAGAAAGGTCAAGGATTGATGTTCCCTAAGGGAGGATGGGAACTTGATGAATCCGTAGAAGAAGCAGCTTATAGGGAATCCCTTGAAGAAGCAGGAGTAATGGGAATGATTGAGCGTGAACTGGGGCAATGGAATTTCATTAGCAAAAGATATGGCATATACTATGAAGGACACATGTTCCCCATGTTTGTCAAGGAACAACTTGATATATGGCCCGAGAAAAATCTACGGAGAAGAATATGGGTATGTTTGGGCCCCACTCTTACTCTTTGCACATATTAATTGATTTTTTAAAACACGTAATTTGCAAATTTTCCTAATTTTTTTTTTGTGGTCACTTTTTGCAGATGACTGTTGCTGAAGCTAGAGAAGTTTGTCAGCATTGGTGGATGAAGGAAGCATTAGATATACTGGTTCAAAGAATCGTGTCTTCACAACAACGAAAAGAAGATTTATACAGCATCGGATGATTCTCTAAGTTTTAAAACAATTTAGTCTAGGTGGGCCTAGGTCAGATTGCCAAGATTTTGAATCTTCAAACATTGAGAGTTGTTATACAGAGGATTGATTTAGGGAGAGGAACAGAATTGTAGATAAATATGGAATTGCAATTCAATTTAATTTACACACTTATAGAACTTACGACTAGACTTCCAAGAGTTAAATAATTTCGTTTTCAAGCCCTTCTTCTTGTGTCTGTCTGTCTTATGGTTTATCAAATATACTCAGAATTTATAAGCACAATGCACTTGGGTGTGAATCCTGCAATGATCAATCAAGTACAAACCCTCCTTCCAACTTCCAACCACCTCTAATTTTGTCTTACGTGAACCTAACTTATTATTGTTTCTATCTTAGAACAATTTCTAGAATGTTGAAGATACATTTATAAGCGAAGAAGCACAAAGC
Coding sequences of Glyma08g05000
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g05000.1 sequence type=CDS gene model=Glyma08g05000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTTGCTTGGTATCTCGCTCGGGAAGGGAATTGCAGAGGTACAACAACATGGGTGGCCGGCAAGTTGTTGGGTGCATACCTTATAGATATAAACAAGACATAGAGGGTAAAATGAGCAACGAATTGGAAGTACTAGTGGTTAGTTCACAGAAAGGTCAAGGATTGATGTTCCCTAAGGGAGGATGGGAACTTGATGAATCCGTAGAAGAAGCAGCTTATAGGGAATCCCTTGAAGAAGCAGGAGTAATGGGAATGATTGAGCGTGAACTGGGGCAATGGAATTTCATTAGCAAAAGATATGGCATATACTATGAAGGACACATGTTCCCCATGTTTGTCAAGGAACAACTTGATATATGGCCCGAGAAAAATCTACGGAGAAGAATATGGATGACTGTTGCTGAAGCTAGAGAAGTTTGTCAGCATTGGTGGATGAAGGAAGCATTAGATATACTGGTTCAAAGAATCGTGTCTTCACAACAACGAAAAGAAGATTTATACAGCATCGGATGA
>Glyma08g05000.2 sequence type=CDS gene model=Glyma08g05000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTTGCTTGGTATCTCGCTCGGGAAGGGAATTGCAGAGGTACAACAACATGGGTGGCCGGCAAGTTGTTGGGTGCATACCTTATAGATATAAACAAGACATAGAGGGTAAAATGAGCAACGAATTGGAAGTACTAGTGGTTAGTTCACAGAAAGGTCAAGGATTGATGTTCCCTAAGGGAGGATGGGAACTTGATGAATCCGTAGAAGAAGCAGCTTATAGGGAATCCCTTGAAGAAGCAGGAGTAATGGGAATGATTGAGCGTGAACTGGGGCAATGGAATTTCATTAGCAAAAGATATGGCATATACTATGAAGGACACATGTTCCCCATGTTTGTCAAGGAACAACTTGATATATGGCCCGAGAAAAATCTACGGAGAAGAATATGGGTATGTTTGGGCCCCACTCTTACTCTTTGCACATATTAA
Predicted protein sequences of Glyma08g05000
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g05000.1 sequence type=predicted peptide gene model=Glyma08g05000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MACLVSRSGRELQRYNNMGGRQVVGCIPYRYKQDIEGKMSNELEVLVVSSQKGQGLMFPKGGWELDESVEEAAYRESLEEAGVMGMIERELGQWNFISKRYGIYYEGHMFPMFVKEQLDIWPEKNLRRRIWMTVAEAREVCQHWWMKEALDILVQRIVSSQQRKEDLYSIG*
>Glyma08g05000.2 sequence type=predicted peptide gene model=Glyma08g05000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MACLVSRSGRELQRYNNMGGRQVVGCIPYRYKQDIEGKMSNELEVLVVSSQKGQGLMFPKGGWELDESVEEAAYRESLEEAGVMGMIERELGQWNFISKRYGIYYEGHMFPMFVKEQLDIWPEKNLRRRIWVCLGPTLTLCTY*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
