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Report for Sequence Feature Glyma08g04980

Feature Type:gene_model
Chromosome:Gm08
Start:3563175
stop:3566108
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g04980
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G63380AT Annotation by Michelle Graham. TAIR10: ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein | chr3:23407112-23410213 REVERSE LENGTH=1033 SoyBaseE_val: 0ISS
GO:0002679GO-bp Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response SoyBaseN/AISS
GO:0006754GO-bp Annotation by Michelle Graham. GO Biological Process: ATP biosynthetic process SoyBaseN/AISS
GO:0006812GO-bp Annotation by Michelle Graham. GO Biological Process: cation transport SoyBaseN/AISS
GO:0006816GO-bp Annotation by Michelle Graham. GO Biological Process: calcium ion transport SoyBaseN/AISS
GO:0006882GO-bp Annotation by Michelle Graham. GO Biological Process: cellular zinc ion homeostasis SoyBaseN/AISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0009624GO-bp Annotation by Michelle Graham. GO Biological Process: response to nematode SoyBaseN/AISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0030968GO-bp Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response SoyBaseN/AISS
GO:0070588GO-bp Annotation by Michelle Graham. GO Biological Process: calcium ion transmembrane transport SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0005388GO-mf Annotation by Michelle Graham. GO Molecular Function: calcium-transporting ATPase activity SoyBaseN/AISS
GO:0005516GO-mf Annotation by Michelle Graham. GO Molecular Function: calmodulin binding SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0015662GO-mf Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism SoyBaseN/AISS
GO:0046872GO-mf Annotation by Michelle Graham. GO Molecular Function: metal ion binding SoyBaseN/AISS
KOG0204 KOG Calcium transporting ATPase JGI ISS
PTHR24093Panther FAMILY NOT NAMED JGI ISS
PTHR24093:SF73Panther SUBFAMILY NOT NAMED JGI ISS
PF00122PFAM E1-E2 ATPase JGI ISS
PF00689PFAM Cation transporting ATPase, C-terminus JGI ISS
PF00690PFAM Cation transporter/ATPase, N-terminus JGI ISS
PF00702PFAM haloacid dehalogenase-like hydrolase JGI ISS
UniRef100_B9REP4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cation-transporting atpase plant, putative n=1 Tax=Ricinus communis RepID=B9REP4_RICCO SoyBaseE_val: 0ISS
UniRef100_I1KQA6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KQA6_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g04980
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g04980 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g045000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g04980
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g04980
>Glyma08g04980.1   sequence type=CDS   gene model=Glyma08g04980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACATGCAAGAAGAGGTGGCGAATGGCTTTGAATGCCATCTCTTTCGTCAAGACTCTTCACCATCTCTCCAACAAAGCTTTTCACATCAATACCCCAACCCAGCTCTTGCGCTCCTTCTCGTACCTTTCCATTGGCGTTGCTCCAGAAGAACCCTCCTTCAACAACGTTGATCCCAAACTTCTCAGCGATATGGTGAGGGAAAAAAGCAGCGAGTCTCTCACCCAACTTGGAGGCGTCAAAGAACTCGCCAAACTTCTTGAAACCGACGTGAAGCGTGGCATCAGAGACATTGATAACCGAAAACGTGTCTTCGGTGAAAACACGTTCACGAAACCTCCATCCAAAGGTTTTCTTTCTTTTGTCCTAGAATCTTTTAAAGATCCCACTATCATTATTCTTTTGGTTTGCGCTGTTCTTTCACTTGGCTTCGGCATCAAGCAACATGGCTGGAAGGATGGATGGTACGATGGAGGAAGCATCATACTGGCGGTTGTTCTCGTCATTGTTGTCTCTTCCGTCAGCAACTTCAACCAATCTAGACAATTCCAGAAGCTTTCAGCGAAAAGTGACAACTTAGGAGTGGAAGTGGTACGAGGTGGTAGACGCCAAAGGGTGTCAATCTTTGAGGTGGTGGTCGGTGACGTTGCTTACTTGAAGATCGGTGATCAGGTTCCAGCAGATGGGGTGTTTTTAGAGGGTCATTCGTTGAAGGTGGACGAGTCTAGCATGACGGGGGAGAGTGACCACGTGCATGTGAACGGTGACACGAACCCTTTCTTGTTATCTGGCACAAAGGTCACTGATGGTTTTGCACACATGCTTGTTACTTGTGTGGGTATGAACACTGCATGGGGTGCCATGATGGGTTCCATAACGAGAGAGGTCAATGAGGAGACACCTTTGCAGGTGCGTCTCAACAAATTGACTTCTGCTATTGGCAAGGTTGGTTTGTTTGTGGCTGCAATTGTTTTGGTGGTGTCTATGATACGGTACTTGACGGGAAGTACCAGAGATGACTTTGGGATCCGAGAATTTGTTCGGGGAAAGACTAAGTCTGAGGATGTCATGAATGCGGTTGTGGGGATTGTTGCTGCGGCTGTGACAATTGTGGTGGTGGCTATTCCAGAAGGGTTGCCATTGGCTGTTACTCTGAATTTGGCTTATTCCATGAAGAAAATGATGAGGGATAATGCCATGGTTCGGAGAATCTCTGCTTGTGAGACAATGGGGTCTGCTACAACAATCTGCACTGATAAAACAGGTACACTTACGTTGAATGAGATGAAGGTGACAGAGGTTTGGGTGGGGAAAAAGGAAATAGGAGGAGAAGATCGTTATTTGGCGCCAAGTTTAGTTCAATTATTGAAACAAGGGATTGGGTTGAATACCACTGCAAGTGTTTATCAGCCGCAACAAACCTCGCTGCCTGAAATTTCGGGCAGTCCTACTGAGAAAGCGTTGCTTTCTTGGGCGGTGGTGGATTTGGGGATGGACAATATTGATGAAGTGAAGCAGAATTGTGAGATAATTCATGTGGAGACGTTCAACTCTGCGAAAAAGAGAAGCGGGATTCTGATGAGGGAGAAGAGAGGGAATATGAATATGAATATTCATACACACTGGAAGGGAGCTGCTGAGATGATATTGGCTATGTGTTCAAATTATTATGACCATACAGGTGAAGTCATTGTCATGGATGATGGAGAAAGGGTTCAGATTGAGAACATTGTCAAGGGCATGGCAACCAAAAGTTTGAGATGCATTGCCTTTGCTCAAAAGAGCTGTGAAAAGCTTGAAGAGACGGGACTAACGTTGTTGGGGATACTTGGGTTGAAAGACCCTTGTAGGCCAGGAGTTGAAGCAGCAGTTGATTCCTGCAAGAATGCTGGAGTGAAGATCAAGATGATCACAGGAGATAATGTGCACACAGCAAGGGCCATAGCCTCTGAATGTGGGATTCTTTACCCTAATAATGATGAATTGGATGAAGAGGCAGTGGTTGAAGGGTTTCAATTCAGAAACTTCTCACACGAGGAGAGAATGGATAAGATTGACAGAATCAGAGTCATGGCTAGATCGTCTCCATTTGACAAGCTTCTGATGGTTCAATGCTTAAAGCAGAAGGGTCATGTGGTGGCAGTCACAGGTGATGGCACAAATGATGCACCTGCTCTCAAGGAAGCAGATATTGGACTTTCCATGGGAATACAAGGAACTGAAGTGGCAAAGGAGAGTTCAGATATTGTTATACTTGACGACAATTTCTCTTCTGTGGTTACCGTACTAAGGTGGGGAAGATGTGTGTACACAAACATACAAAAGTTCATTCAGTTTCAGCTCACGGTTAACGTTGCTGCACTTGTCATCAACTTTGTAGCTGCTGTTTCTTCTGGCAAAGTGCCTCTTTCAGCTGTCCAGCTTTTGTGGGTAAACCTGATAATGGACACTCTTGGAGCTTTGGCCTTGGCCACCGAGGAACCCACTAATGATCTCTTGAAGATGCCACCTGTAGGAAGAGTTGAGCCACTTATAACTAGAGTTATGTGGAGGAACCTCATTTCACAGGCATTGTATCAAGTGCTTGTCTTGCTGATCTTACAATTCAAGGGAAGATCAATCTTTGACGTCAGTGAGAAGGTGAAGAACACCCTTATTTTCAATGCCTTTGTCCTCTGCCAAGTCTTCAATGAGTTCAATGCAAGGAAGCTGGAGAAGAAGAACATCTTTGAGGGGCTTGGTAAAAATAAGTTGTTCGTGGCAATTGTGGGCCTAACTGTAATTCTTCAACTAGTGATGGTTGAGTTTTTGAAGAAGTTTGCCAATACTGAGAGGTTGACTTGGGAGCAATGGGGTGTTTGTGTTGGCATTGGAGCTTTGTCTTGGCCAATTGGTTTGCTGGTGAAGTGTATCTCAGTTGGTCCCAACAAGTAG
Predicted protein sequences of Glyma08g04980
>Glyma08g04980.1   sequence type=predicted peptide   gene model=Glyma08g04980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTCKKRWRMALNAISFVKTLHHLSNKAFHINTPTQLLRSFSYLSIGVAPEEPSFNNVDPKLLSDMVREKSSESLTQLGGVKELAKLLETDVKRGIRDIDNRKRVFGENTFTKPPSKGFLSFVLESFKDPTIIILLVCAVLSLGFGIKQHGWKDGWYDGGSIILAVVLVIVVSSVSNFNQSRQFQKLSAKSDNLGVEVVRGGRRQRVSIFEVVVGDVAYLKIGDQVPADGVFLEGHSLKVDESSMTGESDHVHVNGDTNPFLLSGTKVTDGFAHMLVTCVGMNTAWGAMMGSITREVNEETPLQVRLNKLTSAIGKVGLFVAAIVLVVSMIRYLTGSTRDDFGIREFVRGKTKSEDVMNAVVGIVAAAVTIVVVAIPEGLPLAVTLNLAYSMKKMMRDNAMVRRISACETMGSATTICTDKTGTLTLNEMKVTEVWVGKKEIGGEDRYLAPSLVQLLKQGIGLNTTASVYQPQQTSLPEISGSPTEKALLSWAVVDLGMDNIDEVKQNCEIIHVETFNSAKKRSGILMREKRGNMNMNIHTHWKGAAEMILAMCSNYYDHTGEVIVMDDGERVQIENIVKGMATKSLRCIAFAQKSCEKLEETGLTLLGILGLKDPCRPGVEAAVDSCKNAGVKIKMITGDNVHTARAIASECGILYPNNDELDEEAVVEGFQFRNFSHEERMDKIDRIRVMARSSPFDKLLMVQCLKQKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFSSVVTVLRWGRCVYTNIQKFIQFQLTVNVAALVINFVAAVSSGKVPLSAVQLLWVNLIMDTLGALALATEEPTNDLLKMPPVGRVEPLITRVMWRNLISQALYQVLVLLILQFKGRSIFDVSEKVKNTLIFNAFVLCQVFNEFNARKLEKKNIFEGLGKNKLFVAIVGLTVILQLVMVEFLKKFANTERLTWEQWGVCVGIGALSWPIGLLVKCISVGPNK*






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