SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G48790 | AT | Annotation by Michelle Graham. TAIR10: associated molecule with the SH3 domain of STAM 1 | chr1:18043925-18047427 REVERSE LENGTH=507 | SoyBase | E_val: 0 | ISS |
| GO:0006511 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process | SoyBase | N/A | ISS |
| GO:0006623 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole | SoyBase | N/A | ISS |
| GO:0016192 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG2880 | KOG | SMAD6 interacting protein AMSH, contains JAB/MPN/Mov34 domain | JGI | ISS | |
| PTHR12947 | Panther | AMSH | JGI | ISS | |
| PTHR12947:SF4 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF01398 | PFAM | Mov34/MPN/PAD-1 family | JGI | ISS | |
| UniRef100_G7KN01 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: STAM-binding protein n=1 Tax=Medicago truncatula RepID=G7KN01_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI00023390DB | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023390DB related cluster n=1 Tax=unknown RepID=UPI00023390DB | SoyBase | E_val: 0 | ISS |
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Glyma08g04970 not represented in the dataset |
Glyma08g04970 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g34700 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g044900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g04970.1 sequence type=CDS gene model=Glyma08g04970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTGTTCTTCGGAGACTATCAACATCGCTGCGAGTACACAGAAACTTGATGTTGATAATCGAATTGCTCTCCGCTTCTACTACAGAATCGCCGATAATATCCTCAAACAGGCTGATATCTTTCGTGCAGAGACAAATATTGTTGATCTGTATATCATGCTCCTAAGATTTTCCAGTTTGGTCTCCGAGACAATACCTCGTCACCGAGATTATAGATCATCTTCACAAGGCAAAAAAGAAGCTTTGAGAAAGAAACTGTTACATTCTGTGAATGAGCTAGAGAAATTGAAACCGAAGGTGCAACAGAAGATCAATGAGTTTAACAGCAGGCGAGCATACCAACACAATGGGTGGGAAAAATATCATTCAAATGATTTTATGGATTTTTCTCCAGCAAAAAAGGCAGTCATACCAACCACTGGAGAGTTTGTTTACCAAGGATCAAGGGGCCAGCAGTTTTCTAGTGCAAGGCCTGTGGAAGAGAATATGAGGAGACTATCTCTAAGTCTCCCATGTCCAAAGGAGGAAACTCTCTCTAGACATTCTGTTCTAGGTCCCAATGGGCTGAAAGGGCAGTGGCGACCACCTGCAAGTGATAAAGGGGTTAGGTATCCAACCATCATAGATCTGTCTCCAGTTGAAATTCCAAGCCTTCAACATTCCTTGGAAGATGGATCTCTGAATAAAAAAGATAATAGCATTTCAGAACAACATAAATCAGATTTAGAATCAATTCTTACCCAGAGTGATGACTGCAAGGCAAAACATGCTGATGAAGCTCCTTCTCTTATCTCTTTTGAAGCAACAGAAGTCCATGCTCAAATAGAAGTTACCAGACAGCCTTCTCCTCCACCTGTACTTGCTGAAGTAAAAGATTTGGTTCCTGCAGTGTTATCTCATGTTAATGAGGAAGGATGTAAGACAGAGATTCTAACATCAGATAGTATTGTTCGTGCTGAGTCTCCACTGCAACTACACATTTCAACTTCTATGATGGAGAGTTTTATGAAGCTTGCCAAGTCAAACACTGATAAAAATTTAGAGACTTGTGGAATCCTTGCTGGTTTGCTTAAAAACAGAAAATTTTATATTACCGCTCTAATAATCCCAAAGCAGGAGGCAACATCCAGTTCTTGTCAAGCTACAAATGAAGAGGAGATATTTGAAGTACAGGATAAGCAATCTCTTTTCTCCCTTGGGTGGATCCACACACATCCTACACAATCTTGTTTCATGTCATCAATTGATGTACACACCCATTACTCTTATCAGATTATGCTGCCAGAAGCTGTTGCAATAGTTATGGCACCAACAGACAGTTCAAGAAGCCATGGCATTTTTCGGTTGACAACCCCTGGTGGAATGTCGGTCATTAGACAATGCCAGCAGCGTGGCTTTCATCCACATAATCAACCTCCAGATGGTGGTCCCATTTATGATACATGTACAGATGTTTACATGAACCCAGATTTAAAATTTGATGTCATTGATCTTCGATGA
>Glyma08g04970.1 sequence type=predicted peptide gene model=Glyma08g04970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MCSSETINIAASTQKLDVDNRIALRFYYRIADNILKQADIFRAETNIVDLYIMLLRFSSLVSETIPRHRDYRSSSQGKKEALRKKLLHSVNELEKLKPKVQQKINEFNSRRAYQHNGWEKYHSNDFMDFSPAKKAVIPTTGEFVYQGSRGQQFSSARPVEENMRRLSLSLPCPKEETLSRHSVLGPNGLKGQWRPPASDKGVRYPTIIDLSPVEIPSLQHSLEDGSLNKKDNSISEQHKSDLESILTQSDDCKAKHADEAPSLISFEATEVHAQIEVTRQPSPPPVLAEVKDLVPAVLSHVNEEGCKTEILTSDSIVRAESPLQLHISTSMMESFMKLAKSNTDKNLETCGILAGLLKNRKFYITALIIPKQEATSSSCQATNEEEIFEVQDKQSLFSLGWIHTHPTQSCFMSSIDVHTHYSYQIMLPEAVAIVMAPTDSSRSHGIFRLTTPGGMSVIRQCQQRGFHPHNQPPDGGPIYDTCTDVYMNPDLKFDVIDLR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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