Glyma08g04870 - SoyBase

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Report for Sequence Feature Glyma08g04870

Feature Type:	gene_model
Chromosome:	Gm08
Start:	3454049
stop:	3461914
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g04870

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G33760	AT	Annotation by Michelle Graham. TAIR10: tRNA synthetase class II (D, K and N) family protein \| chr4:16189285-16193260 REVERSE LENGTH=664	SoyBase	E_val: 0	ISS
GO:0006364	GO-bp	Annotation by Michelle Graham. GO Biological Process: rRNA processing	SoyBase	N/A	ISS
GO:0006399	GO-bp	Annotation by Michelle Graham. GO Biological Process: tRNA metabolic process	SoyBase	N/A	ISS
GO:0006418	GO-bp	Annotation by Michelle Graham. GO Biological Process: tRNA aminoacylation for protein translation	SoyBase	N/A	ISS
GO:0009658	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast organization	SoyBase	N/A	ISS
GO:0048481	GO-bp	Annotation by Michelle Graham. GO Biological Process: ovule development	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0004812	GO-mf	Annotation by Michelle Graham. GO Molecular Function: aminoacyl-tRNA ligase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016874	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ligase activity	SoyBase	N/A	ISS
KOG2411	KOG	Aspartyl-tRNA synthetase, mitochondrial	JGI		ISS
PTHR22594	Panther	ASPARTYL/LYSYL-TRNA SYNTHETASE	JGI		ISS
PTHR22594:SF5	Panther	ASPARTYL-TRNA SYNTHETASE	JGI		ISS
PF00152	PFAM	tRNA synthetases class II (D, K and N)	JGI		ISS
PF01336	PFAM	OB-fold nucleic acid binding domain	JGI		ISS
PF02938	PFAM	GAD domain	JGI		ISS
UniRef100_G7LAG9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Aspartyl-tRNA synthetase n=1 Tax=Medicago truncatula RepID=G7LAG9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI00023389EC	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023389EC related cluster n=1 Tax=unknown RepID=UPI00023389EC	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g04870

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g04870

Paralog	Evidence	Comments
Glyma05g34820	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g04870 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g043900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g04870

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g04870

Limit To All Plant Sequences

>Glyma08g04870.2   sequence type=CDS   gene model=Glyma08g04870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGTAATTCCAATTTTACCCTTAACCCATCCGTTATCTCCTTCCCACGACACGGTGCTACTCCTTGCTTTTACTGCGTTCCACTGTTCTTCATATTTCTTCTGGTCAATGGTTGCTCTACAATTATTCTATTTTTCCCATTCATTATTATCCACCCATTATTCTCACTAGGTGCAAGTATTCCGCTTAGCGCCAATTTCAGCAAATTTCAATACTTTTCACGAATTCATCATTTTATTTTTTTATTTTTTTCAATCTACAGAGTCCGAATCTCTTTTGTTTGGGTTTTAAATATTCAAGTTTTTTTCAAAGGATATTTCGTTACTGGGTATCCATTATCCAATTTCCATTTTCTCAAAAAAACCATGTCTTTGTTCCTTAAAGCTTTGCCTTTGATGGCCTTCCGCACGAGGCCATGTTTGGTGTTTCTGTGCAGAGTTTCCAACACCATTCCACTGTCACTTTCCAGAACCAGTACCAGAACCAGAACCGTGTTTTCTAATTCTGCTTCTGCTTCTGAAACACTCACTTCCAATGCTAAACCACCTTTGGCCCTCAGTGAACCCCTTGAGTGGGTCAACAGGACTGCATTTTGTGGTAAATTGTCTTCAAATGATGTGGGAAAAAGTGTCCAGCTTTGTGGTTGGGTTGCCCTTCACAGGGTCCATGGTGGCCTCACATTTCTTAATCTCAGAGACCACACTGGCATTATTCAGGTTACAACCCTTCCAGATGAATTTCCAGATGCCCATTCTGCTATCAATGACCTGAGACTTGAGTACGTGGTTGCCATTGAAGGTGTTGTCAGGTCTAGGCCAAATGAGTCAATCAACAAGAAGATGCAAACTGGCTTCATCGAGGTTGCTGCAAATAGAGTTCAAGTGCTAAATTCGGTAAATTCAAAGTTGCCATTCTTGGTCACTACAGCAGATGATGCAAAAGACTCTCTTAAAGAGGAAATCCGTTTGAGGTATCGATGTCTTGATCTGAGGCGGCAACAAATGAATTTCAACATATTGCTGCGGCATAAGGTGGTTAAACTCATTCGAAGATATCTAGAAGACATTCATGGTTTTGTGGAGATTGAAACTCCCATACTGTCAAGATCCACACCAGAAGGTGCCCGGGATTATTTAGTTCCATCAAGAATCCAGCCAGGAACATTCTATGCCTTGCCACAAAGTCCTCAGCTATTTAAGCAAATGCTAATGGTAGCTGGTTTTGACAAATATTATCAGATTGCAAGATGTTTCCGTGATGAAGATTTAAGAGCTGATAGACAACCTGAGTTCACCCAACTAGATATGGAAATGGCCTTTACTCCTTACGAGGATATGTTAACGCTTAATGAAGAATTGATTAGAAAGGTTTTCCTTGAAATTAAAGGTGTGGAGTTACCAAACCCTTTTCCCAGGCTTACATATGCTGAAGCAATGAGTAGATATGGTTCAGACCGGCCAGATACCAGATTTGATCTTGATTTAAAAGATGTATCTGATATTTTCTCAGGGTCTTCCTTCAAGGTATTCTCTGATTCCTTGGAGAATGGGGGAGTTATCAAAGTGTTATGTGTACCTTCTGGTACAAAAAAATACTCAAATTCAGCCCTTAAGAAAGGTGATATTTACAATGAAGCACTCAAATCTGGTGCAAAGGGTTTGCCTTTTCTCAAGGTCTTGGATGATGGGAATATTGAAGGAATCTCTGTTTTAGTATCAAGTATGGATCCTACAACTAGAGGGAATTTGTTAAGGCGATGCTCTGCAGGACCAAGCGATCTGATTTTATTTGCAGTGGGTCATCACGCGTCTGTAAATAAAACTTTAGACCGTCTTAGAGTTTATGTAGCCCATGACCTAGGTTTGGTTGACCATGGCAGGCATTCAGTTTTGTGGATCACTGATTTTCCGATGTTTGAGTGGAATGATCCAGAGCAAAGGCTAGAGGCTCTTCATCATCCTTTCACTGCACCAAATCCTAAAGACATGAATGACCTTGCATCTGCTCGTGCGTTGGCTTATGACATGGTTTACAATGGAGTGGAGATTGGTGGGGGAAGTCTAAGAATTTATAAACGTGATATACAACAAAAGGTTTTGGAGGTCGTTGGCATCTCAATGGAGCAGGAGGCATAG

Predicted protein sequences of Glyma08g04870

Limit To All Plant Sequences

>Glyma08g04870.2   sequence type=predicted peptide   gene model=Glyma08g04870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRNSNFTLNPSVISFPRHGATPCFYCVPLFFIFLLVNGCSTIILFFPFIIIHPLFSLGASIPLSANFSKFQYFSRIHHFIFLFFSIYRVRISFVWVLNIQVFFKGYFVTGYPLSNFHFLKKTMSLFLKALPLMAFRTRPCLVFLCRVSNTIPLSLSRTSTRTRTVFSNSASASETLTSNAKPPLALSEPLEWVNRTAFCGKLSSNDVGKSVQLCGWVALHRVHGGLTFLNLRDHTGIIQVTTLPDEFPDAHSAINDLRLEYVVAIEGVVRSRPNESINKKMQTGFIEVAANRVQVLNSVNSKLPFLVTTADDAKDSLKEEIRLRYRCLDLRRQQMNFNILLRHKVVKLIRRYLEDIHGFVEIETPILSRSTPEGARDYLVPSRIQPGTFYALPQSPQLFKQMLMVAGFDKYYQIARCFRDEDLRADRQPEFTQLDMEMAFTPYEDMLTLNEELIRKVFLEIKGVELPNPFPRLTYAEAMSRYGSDRPDTRFDLDLKDVSDIFSGSSFKVFSDSLENGGVIKVLCVPSGTKKYSNSALKKGDIYNEALKSGAKGLPFLKVLDDGNIEGISVLVSSMDPTTRGNLLRRCSAGPSDLILFAVGHHASVNKTLDRLRVYVAHDLGLVDHGRHSVLWITDFPMFEWNDPEQRLEALHHPFTAPNPKDMNDLASARALAYDMVYNGVEIGGGSLRIYKRDIQQKVLEVVGISMEQEA*

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