Glyma08g04850 - SoyBase

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Report for Sequence Feature Glyma08g04850

Feature Type:	gene_model
Chromosome:	Gm08
Start:	3434305
stop:	3439885
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g04850

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G13070	AT	Annotation by Michelle Graham. TAIR10: RNA-binding CRS1 / YhbY (CRM) domain protein \| chr4:7621780-7623051 REVERSE LENGTH=343	SoyBase	E_val: 3.00E-127	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
PF01985	PFAM	CRS1 / YhbY (CRM) domain	JGI		ISS
UniRef100_G7JMQ3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CRM domain-containing protein, putative n=1 Tax=Medicago truncatula RepID=G7JMQ3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KQ88	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KQ88_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g04850

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g04850

Paralog	Evidence	Comments
Glyma05g34840	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g04850 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g043700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g04850

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g04850

Limit To All Plant Sequences

>Glyma08g04850.3   sequence type=transcript   gene model=Glyma08g04850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTCAATGTACCATTAACTGGTGCAAAGCAATACAAAAACAAAATTGACATTTCCAAAAAAACTCTAATCACCTGGAACACAGCGGAGGTAGGAGACACGGTAGAGAAGGAGGAAACAACGGCGCGAGCGGCTTGACAAGCAAACTAACAAACAGAAGGTCCCGTCAATTGAATAGTCTCCACTCTCCACCGTCGCTCAGGTTTCGCAGGATTTTGGACTTTTATGTTTTCTGCAGCTTTAATCACGGGAACAAGGCGTGGGTTTTCCTGCACATTTAATAGAGATAGCTTATTCTGGTTATGCTGTCTAGTTGAACATGTTCCGACCATTGCATCATCCCCTACCACAACTTCATATTTCTGGTCTTTTACTCCTGACAAGTGCATACATCAAAGAACTTACAGAACACCTAGGCATCTTTCAAGAGTTCCCTCCTTATCTTCTCGACCAGGTTTTTTATTAATGCAGAGATCAAATATCTTTGGAATCCATGATATTCTGGGAAACTGGCTCCCTGCCAGATACATTAGTAATGAATCAGTTGAGCTGAAGACTGACAATAATGTCGTACGGTTCTCTCTAGACAAGTCTGATGATATTAATTATGGAAAGAAGAGCCAGCTGAACAAAAGAGTTAAAATGTCTAGAAAAGCTAAACTGAATGAGCTTAGGTTCTATCGTTTGAAGGCCAAGAAAAAGATGATTTCCCCAAATCCAGAAGTTAGAATTACATATAAGCTTGAAAAGGCCAAGCGAAAGGAAACTTGGTTGGTTGAGAAGCTAAGAAAATTTGATGTACCAAAATCTCCTCCAGAAACATTTGATCCTGAAATTTTAACTGAGGAGGAGAGGCATTACCTGAAGCGCACTGGTGAGAAAAAGAAACATTATGTTCCAGTTGGGAGACGAGGAGTGTTTGGTGGGGTAGTTCTTAATATGCATCTTCACTGGAAAAATCATGAAACAGTTAAGGTTATCTGCAAGCCTTGCAAACCAGGGCAAGTTCATGAATATGCTGAAGAGCTTGCCCGACTGAGCAAAGGCATTGTGATTGACATCAAGCCCAATAATACTATCATTTTTTACCGTGGAAAGAACTATGTACAACCGGAAGTAATGTCACCTCCAAATACATTATCAAAAGTGAAGGCCTTGGAGAAATATAGGTATGAGCAGTCCCTTGAACATACTAGCCAGTTCATTGAAAGATTGGAGAAAGAGCTTGAAGAGTATCATCAGCACCTTGCAAAGTTTAAAAAAGGGAAAGAGGATAATGCTAAAGATGTTAGTTGTGGGATTGGGGAAGCATGACTCTATCTATGCTGGACACAAAATGTCACATACATGAGGCTCATACAACCTGATCTTGTTTGCTATTGAGTAACGATAAGTGCGAGTTTCTGCTCTACTACTGTAACGATTTCATCAGTTACACCATTGGGGTGGAATGTCAAGCATCACATATTCCAAGGTCTTGTTCATTATTGGAGATGCCAACGATTGAAGAAGGATTTCTCAAACCCATTCCCCGGATGCACTGAAACAAAGTTCAACATAACTTGCTCTGTAACAAATTTCATAACAAAAGGTTTAGCAAGTGTTGCTGCATTTAGGTTAGGACGGTGGATGATGTTACTATCAATATAGCTACGGCCATTAGCTCCATGATAAGGCTAACCATACCAAATGTTTATGGCAAGCTATTTGTCTTTATGAAAGTACAGATCATAACAGTTTCCCAATGCACATTGGTAGAGTGACTTGTCTTTAATCATAATTGGGTCCTCCATGTCTCTCGCTATTTTGTTGGTCCAATGAAAATAACTTAATTCAAGCTAGACCCCACTCTAATTCACACAACCAAAGATAATAAACAGGA

Coding sequences of Glyma08g04850

Limit To All Plant Sequences

>Glyma08g04850.2   sequence type=CDS   gene model=Glyma08g04850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTTCTGCAGCTTTAATCACGGGAACAAGGCGTGGGTTTTCCTGCACATTTAATAGAGATAGCTTATTCTGGTTATGCTGTCTAGTTGAACATGTTCCGACCATTGCATCATCCCCTACCACAACTTCATATTTCTGGTCTTTTACTCCTGACAAGTGCATACATCAAAGAACTTACAGAACACCTAGGCATCTTTCAAGAGTTCCCTCCTTATCTTCTCGACCAGGTTTTTTATTAATGCAGAGATCAAATATCTTTGGAATCCATGATATTCTGGGAAACTGGCTCCCTGCCAGATACATTAGTAATGAATCAGTTGAGCTGAAGACTGACAATAATGTCGTACGGTTCTCTCTAGACAAGTCTGATGATATTAATTATGGAAAGAAGAGCCAGCTGAACAAAAGAGTTAAAATGTCTAGAAAAGCTAAACTGAATGAGCTTAGGTTCTATCGTTTGAAGGCCAAGAAAAAGATGATTTCCCCAAATCCAGAAGTTAGAATTACATATAAGCTTGAAAAGGCCAAGCGAAAGGAAACTTGGTTGGTTGAGAAGCTAAGAAAATTTGATGTACCAAAATCTCCTCCAGAAACATTTGATCCTGAAATTTTAACTGAGGAGGAGAGGCATTACCTGAAGCGCACTGGTGAGAAAAAGAAACATTATGTTCCAGTTGGGAGACGAGGAGTGTTTGGTGGGGTAGTTCTTAATATGCATCTTCACTGGAAAAATCATGAAACAGTTAAGGTTATCTGCAAGCCTTGCAAACCAGGGCAAGTTCATGAATATGCTGAAGAGCTTGCCCGACTGAGCAAAGGCATTGTGATTGACATCAAGCCCAATAATACTATCATTTTTTACCGTGGAAAGAACTATGTACAACCGGAAGTAATGTCACCTCCAAATACATTATCAAAAGTGAAGGCCTTGGAGAAATATAGGTATGAGCAGTCCCTTGAACATACTAGCCAGTTCATTGAAAGATTGGAGAAAGAGCTTGAAGAGTATCATCAGCACCTTGCAAAGTTTAAAAAAGGGAAAGAGGATAATGCTAAAGATGGATTGGGGAAGCATGACTCTATCTATGCTGGACACAAAATGTCACATACATGA

>Glyma08g04850.3   sequence type=CDS   gene model=Glyma08g04850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTTCTGCAGCTTTAATCACGGGAACAAGGCGTGGGTTTTCCTGCACATTTAATAGAGATAGCTTATTCTGGTTATGCTGTCTAGTTGAACATGTTCCGACCATTGCATCATCCCCTACCACAACTTCATATTTCTGGTCTTTTACTCCTGACAAGTGCATACATCAAAGAACTTACAGAACACCTAGGCATCTTTCAAGAGTTCCCTCCTTATCTTCTCGACCAGGTTTTTTATTAATGCAGAGATCAAATATCTTTGGAATCCATGATATTCTGGGAAACTGGCTCCCTGCCAGATACATTAGTAATGAATCAGTTGAGCTGAAGACTGACAATAATGTCGTACGGTTCTCTCTAGACAAGTCTGATGATATTAATTATGGAAAGAAGAGCCAGCTGAACAAAAGAGTTAAAATGTCTAGAAAAGCTAAACTGAATGAGCTTAGGTTCTATCGTTTGAAGGCCAAGAAAAAGATGATTTCCCCAAATCCAGAAGTTAGAATTACATATAAGCTTGAAAAGGCCAAGCGAAAGGAAACTTGGTTGGTTGAGAAGCTAAGAAAATTTGATGTACCAAAATCTCCTCCAGAAACATTTGATCCTGAAATTTTAACTGAGGAGGAGAGGCATTACCTGAAGCGCACTGGTGAGAAAAAGAAACATTATGTTCCAGTTGGGAGACGAGGAGTGTTTGGTGGGGTAGTTCTTAATATGCATCTTCACTGGAAAAATCATGAAACAGTTAAGGTTATCTGCAAGCCTTGCAAACCAGGGCAAGTTCATGAATATGCTGAAGAGCTTGCCCGACTGAGCAAAGGCATTGTGATTGACATCAAGCCCAATAATACTATCATTTTTTACCGTGGAAAGAACTATGTACAACCGGAAGTAATGTCACCTCCAAATACATTATCAAAAGTGAAGGCCTTGGAGAAATATAGGTATGAGCAGTCCCTTGAACATACTAGCCAGTTCATTGAAAGATTGGAGAAAGAGCTTGAAGAGTATCATCAGCACCTTGCAAAGTTTAAAAAAGGGAAAGAGGATAATGCTAAAGATGTTAGTTGTGGGATTGGGGAAGCATGA

Predicted protein sequences of Glyma08g04850

Limit To All Plant Sequences

>Glyma08g04850.2   sequence type=predicted peptide   gene model=Glyma08g04850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFSAALITGTRRGFSCTFNRDSLFWLCCLVEHVPTIASSPTTTSYFWSFTPDKCIHQRTYRTPRHLSRVPSLSSRPGFLLMQRSNIFGIHDILGNWLPARYISNESVELKTDNNVVRFSLDKSDDINYGKKSQLNKRVKMSRKAKLNELRFYRLKAKKKMISPNPEVRITYKLEKAKRKETWLVEKLRKFDVPKSPPETFDPEILTEEERHYLKRTGEKKKHYVPVGRRGVFGGVVLNMHLHWKNHETVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNTIIFYRGKNYVQPEVMSPPNTLSKVKALEKYRYEQSLEHTSQFIERLEKELEEYHQHLAKFKKGKEDNAKDGLGKHDSIYAGHKMSHT*

>Glyma08g04850.3   sequence type=predicted peptide   gene model=Glyma08g04850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFSAALITGTRRGFSCTFNRDSLFWLCCLVEHVPTIASSPTTTSYFWSFTPDKCIHQRTYRTPRHLSRVPSLSSRPGFLLMQRSNIFGIHDILGNWLPARYISNESVELKTDNNVVRFSLDKSDDINYGKKSQLNKRVKMSRKAKLNELRFYRLKAKKKMISPNPEVRITYKLEKAKRKETWLVEKLRKFDVPKSPPETFDPEILTEEERHYLKRTGEKKKHYVPVGRRGVFGGVVLNMHLHWKNHETVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNTIIFYRGKNYVQPEVMSPPNTLSKVKALEKYRYEQSLEHTSQFIERLEKELEEYHQHLAKFKKGKEDNAKDVSCGIGEA*

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