Glyma08g04830 - SoyBase

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Report for Sequence Feature Glyma08g04830

Feature Type:	gene_model
Chromosome:	Gm08
Start:	3422039
stop:	3423460
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g04830

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G14870	AT	Annotation by Michelle Graham. TAIR10: PLANT CADMIUM RESISTANCE 2 \| chr1:5128591-5129458 REVERSE LENGTH=152	SoyBase	E_val: 3.00E-58	ISS
GO:0006979	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to oxidative stress	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR15907	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR15907:SF17	Panther	UNKNOWN PROTEIN	JGI		ISS
PF04749	PFAM	PLAC8 family	JGI		ISS
UniRef100_F2YTT5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Fw2.2 (Fragment) n=1 Tax=Arachis stenosperma RepID=F2YTT5_9FABA	SoyBase	E_val: 4.00E-67	ISS
UniRef100_I1KQ86	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KQ86_SOYBN	SoyBase	E_val: 1.00E-125	ISS

Expression Patterns of Glyma08g04830

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g04830

Paralog	Evidence	Comments
Glyma05g34876	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g04830 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g043500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g04830

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g04830

Limit To All Plant Sequences

>Glyma08g04830.1   sequence type=CDS   gene model=Glyma08g04830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTGAGCAACAAGGGTCAGATCCAACAAAGCCAGCAGCGGCGGCAACCGGTTTTCCGGCGACCACCGAGGCTTCTTCCTACGCTCCAGTAGCACCACCCCAGTCCAAACCTACAGTCGATTGGTCCACCGGCCTCTGTGACTGCTTCTCCGATTGTGGAAACTGTTGCATAACGTGGTGGTGTCCATGTGTTACCTTTGGCCGAGTTGCAGAAATTGTTGACAGGGGATCCACGTCATGTGGTGCTAGTGGGGCTCTGTATACGCTGGTTTGTTGTGGGTGGCCATACTCATGCTTCTACCGCTCCAAGATGAGACGGCAATATGGTTTAAAGGGAAATTGTTGTACGGATTGCTTGCTTCATTGCTGCTGCGAGTCCTGCGCCCTCTGTCAAGAATATCGTGAGCTTAAACAACGTGGATTTGACATGATTATTGGGTGGCATGGAAATGTCGAGCAACGAATTCAGGAAGTAGCCATGACTGCTGCAACACCTCCATCAGTCGAAAAGGGCATGAGCCGTTGA

Predicted protein sequences of Glyma08g04830

Limit To All Plant Sequences

>Glyma08g04830.1   sequence type=predicted peptide   gene model=Glyma08g04830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLEQQGSDPTKPAAAATGFPATTEASSYAPVAPPQSKPTVDWSTGLCDCFSDCGNCCITWWCPCVTFGRVAEIVDRGSTSCGASGALYTLVCCGWPYSCFYRSKMRRQYGLKGNCCTDCLLHCCCESCALCQEYRELKQRGFDMIIGWHGNVEQRIQEVAMTAATPPSVEKGMSR*

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