Glyma08g04800 - SoyBase

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Report for Sequence Feature Glyma08g04800

Feature Type:	gene_model
Chromosome:	Gm08
Start:	3411980
stop:	3414173
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g04800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G23220	AT	Annotation by Michelle Graham. TAIR10: Dynein light chain type 1 family protein \| chr1:8242614-8244136 FORWARD LENGTH=129	SoyBase	E_val: 1.00E-64	ISS
GO:0007017	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule-based process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005875	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: microtubule associated complex	SoyBase	N/A	ISS
GO:0003777	GO-mf	Annotation by Michelle Graham. GO Molecular Function: microtubule motor activity	SoyBase	N/A	ISS
KOG3430	KOG	Dynein light chain type 1	JGI		ISS
PTHR11886	Panther	DYNEIN LIGHT CHAIN	JGI		ISS
PTHR11886:SF9	Panther	CYTOPLASMIC DYNEIN LIGHT CHAIN	JGI		ISS
PF01221	PFAM	Dynein light chain type 1	JGI		ISS
UniRef100_C6SVJ0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SVJ0_SOYBN	SoyBase	E_val: 7.00E-95	ISS
UniRef100_D7KMR0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Dynein light chain type 1 family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KMR0_ARALL	SoyBase	E_val: 2.00E-63	ISS

Expression Patterns of Glyma08g04800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g04800 not represented in the dataset	Glyma08g04800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g04800

Paralog	Evidence	Comments
Glyma05g34910	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g04800 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g043300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g04800

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g04800

Limit To All Plant Sequences

>Glyma08g04800.1   sequence type=CDS   gene model=Glyma08g04800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGGTGCACAGGAGGAGCTAGAAAGAAGAAGCAAGTTTCTCAAAAGCTTGATACAAAAGAAGAAAACCATAGAGCAACAAGAGCAGCATGATCACCTACAACACAATAACGTTCGTGTCAGAGCTTGTGACATGCCTCTCCCTCTTCAGAACCGTGCCTTTCGTTGTGCACGTGATCTCCTGGATTCTATGCCATCAAAGAAGCTTGATAGTAAACGCCTGGCTCTCACACTTAAGAAGGAATTTGATACTTCGTATGGTCCAGCTTGGCACTGCATTGTGGGTACTAGTTTTGGTTCCTATGTTACTCATTCCTTTGGTGGTTTCGTGTATTTTTCCATTGACAAGGTTTATGTCCTTCTCTTCAAGACAGCTGTTGAACCATTAGACCATTCATAG

Predicted protein sequences of Glyma08g04800

Limit To All Plant Sequences

>Glyma08g04800.1   sequence type=predicted peptide   gene model=Glyma08g04800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGAQEELERRSKFLKSLIQKKKTIEQQEQHDHLQHNNVRVRACDMPLPLQNRAFRCARDLLDSMPSKKLDSKRLALTLKKEFDTSYGPAWHCIVGTSFGSYVTHSFGGFVYFSIDKVYVLLFKTAVEPLDHS*

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