Report for Sequence Feature Glyma08g04760
Feature Type: gene_model
Chromosome: Gm08
Start: 3380309
stop: 3384282
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g04760
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G01650 AT
Annotation by Michelle Graham. TAIR10: plant UBX domain-containing protein 2 | chr2:284851-286394 REVERSE LENGTH=458
SoyBase E_val: 0 ISS
GO:0006499 GO-bp
Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation
SoyBase N/A ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0019898 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extrinsic to membrane
SoyBase N/A ISS
GO:0003676 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
KOG2699
KOG
Predicted ubiquitin regulatory protein
JGI ISS
PTHR23153 Panther
UBX-RELATED
JGI ISS
PTHR23153:SF2 Panther
UBX-RELATED
JGI ISS
PF00789 PFAM
UBX domain
JGI ISS
PF09409 PFAM
PUB domain
JGI ISS
UniRef100_G7LAI2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: UBX domain-containing protein n=1 Tax=Medicago truncatula RepID=G7LAI2_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1KQ73 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KQ73_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g04760
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma08g04760
Paralog Evidence Comments
Glyma05g34970 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g04760 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g042900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g04760
Transcripts of Glyma08g04760
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g04760.5 sequence type=transcript gene model=Glyma08g04760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
AATAGGTCTGAAGTCAACCCACCCTACCCGGAGCTTCGTTCTGGACATTATTCTCTCTTCTCTTCTCTTCTGTGCTGTGCTTAATTTCCAGCAATGGATGACGTCAAAGACAAGGTGAAGGGCTTCATGAAGAAAGTCAACAACCCTTTCTCTTCTTCCTCATCTGCCAAATTCAAGGGCCAAGGTAGAGTCCTTGGTTCTTCTTCTTCTACACCCGCTAATTCCAATCCTACCCCTCGCCCCTACCCTAATTCGCAGAAACCCTCCTCCTCTTCAGCTGTAACCAATCCCAAACCCTCGCCCCAGAAAACGGAGCAAAATAAAACCACCGATAAGCCTCGCAAAGATGATGGCTTTGACCCCTTTGATTCTTTGGTCACTAATTCCAATAGATCGCAAAATGGGTATTCGCTGAACGTGTTCGAATGCCCCATTTGTAAACAACCCTTTAGATCCGAAGAAGAGGTGTCTGCACACGTTGACGGTTGTTTGAATAACCCTGTTGAGCGTGGAAGTGATGATGGAAATGGGGTCTCAGAGAGTGATGGTGGGTCTAATGATACTAATACTGAATTGGAGGTTTGTGTTGGGACTTACATATCAGGGAAGCCATCTGAGGGATCGGTTGATGTGATCCTCAAACTGTTGAGGAATATTGGTAGGGAACCTGAGAATGTAAAGTTTAGGAGGATCAGGATGAATAATCCCAAGATTAAAGAGGCTGTTGGTGATGTTGCCGGGGGAGTTGAGTTGCTGAGTTTCGTAGGGTTTGAACTCAGGGAGGAGAATGGAGAGACATGGGCAGTGATGGAGTTTCCCTCTGAGGAACAAATAAAATTCATTCAGAGAGCAATAGTGTTGCTGGAATCACAACTTGTACAACAAGGACCTCCTAAGAGAGACGATTTGCCGTCTGCAACTTCTACCGAGATGGGTCCAAAGGCAGAAACAAAGCCGGTTGACAGACAAGTGAAGGTCTTCTTTGCTGTCCCTGAAAGTGTTGCAGCTAAAATTGAGCTGCCAGATTCCTTCTATAAACTTTCAGCTGAAGAGGTCAGAAGAGAAGCTGAATTAAGGAGAAAAAAGATTGCTGATTCTCAGCTTTTAATCCCCAAGTCACTTAAAGAAAAGCAAGCAAAAGTTTCCAGGAAGAGATACACAAAAACTATTATCAGGATTCAATTTCCAGATGGAGTTGTACTTCAAGGTGTATTTGCTCCATGGGAAACAACTATTGCTCTCTATGAGTTTGTCAGCTCAGCATTAAAAGAACCAGGTTTGGAATTTGAGCTAATGCATCCTGTACTTATCCAACGGCGCGTGATCCCCCATTTTCCGAAAGCAGGGGAAAATGCTAAAACAATAGAGGAAGAAGACCTAGTACCTTCTGCTCTAATTAAGTTCAAGCCTCTGGAAACAGATTCTGTTGTTTTCACCGGTCTCAGAAATGAATTGCTTGAAATCAGTGAACCACTTGTAAATGGTTAAGCAATTTATTTTGTATGAATTATATCTGTTCTACTTTCCAGAGTTTTTTTTAATTGGTGTGGATATAGATATAATTTTTTCTACTCATTTTTAACTGATATTTTCTATGAAACTATATAATACTGTGATACATCTCAATACAAATAAATCACTGTGATGATTGATGAAGC
>Glyma08g04760.6 sequence type=transcript gene model=Glyma08g04760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
GTAATATTATTAATACGGTCAGTTTTGTAAAATTATTATTATTAGAGGGAGGCACTGCTTAAACCGTTAAACGTGATTATCTCTCATTGAGGAGACGTAAATGAAAGAATAGAGTGGGATTTGTGAGAAATTGAGGTTTTATGAAGTGGCATAAGCTTATTAGACAAGTTTCCTAATAGGTCTGAAGTCAACCCACCCTACCCGGAGCTTCGTTCTGGACATTATTCTCTCTTCTCTTCTCTTCTGTGCTGTGCTTAATTTCCAGTTTTTGTTTTCAGCAATGGATGACGTCAAAGACAAGGTGAAGGGCTTCATGAAGAAAGTCAACAACCCTTTCTCTTCTTCCTCATCTGCCAAATTCAAGGGCCAAGGTAGAGTCCTTGGTTCTTCTTCTTCTACACCCGCTAATTCCAATCCTACCCCTCGCCCCTACCCTAATTCGCAGAAACCCTCCTCCTCTTCAGCTGTAACCAATCCCAAACCCTCGCCCCAGAAAACGGAGCAAAATAAAACCACCGATAAGCCTCGCAAAGATGATGGCTTTGACCCCTTTGATTCTTTGGTCACTAATTCCAATAGATCGCAAAATGGGTATTCGCTGAACGTGTTCGAATGCCCCATTTGTAAACAACCCTTTAGATCCGAAGAAGAGGTGTCTGCACACGTTGACGGTTGTTTGAATAACCCTGTTGAGCGTGGAAGTGATGATGGAAATGGGGTCTCAGAGAGTGATGGTGGGTCTAATGATACTAATACTGAATTGGAGGTTTGTGTTGGGACTTACATATCAGGGAAGCCATCTGAGGGATCGGTTGATGTGATCCTCAAACTGTTGAGGAATATTGGTAGGGAACCTGAGAATGTAAAGTTTAGGAGGATCAGGATGAATAATCCCAAGATTAAAGAGGCTGTTGGTGATGTTGCCGGGGGAGTTGAGTTGCTGAGTTTCGTAGGGTTTGAACTCAGGGAGGAGAATGGAGAGACATGGGCAGTGATGGAGTTTCCCTCTGAGGAACAAATAAAATTCATTCAGAGAGCAATAGTGTTGCTGGAATCACAACTTGTACAACAAGGACCTCCTAAGAGAGACGATTTGCCGTCTGCAACTTCTACCGAGATGGGTCCAAAGGCAGAAACAAAGCCGGTTGACAGACAAGTGAAGGTCTTCTTTGCTGTCCCTGAAAGTGTTGCAGCTAAAATTGAGCTGCCAGATTCCTTCTATAAACTTTCAGCTGAAGAGGTCAGAAGAGAAGCTGAATTAAGGAGAAAAAAGATTGCTGATTCTCAGCTTTTAATCCCCAAGTCACTTAAAGAAAAGCAAGCAAAAGTTTCCAGGAAGAGATACACAAAAACTATTATCAGGATTCAATTTCCAGATGGAGTTGTACTTCAAGGTGTATTTGCTCCATGGGAAACAACTATTGCTCTCTATGAGTTTGTCAGCTCAGCATTAAAAGAACCAGGTTTGGAATTTGAGCTAATGCATCCTGTACTTATCCAACGGCGCGTGATCCCCCATTTTCCGAAAGCAGGGGAAAATGCTAAAACAATAGAGGAAGAAGACCTAGTACCTTCTGCTCTAATTAAGTTCAAGCCTCTGGAAACAGATTCTGTTGTTTTCACCGGTCTCAGAAATGAATTGCTTGAAATCAGTGAACCACTTGTAAATGGTTAAGCAATTTATTTTGTATGAATTATATCTGTTCTACTTTCCAGAGTTTTTTTTAATTGGTGTGGATATAGATATAATTTTTTCTACTCATTTTTAACTGATATTTTCTATGAAACTATATAATACTGTGATACATCTCAATACAAATAAATCACTGTGATGATTGATGAAGCAATTACGGGCTACATTCATGCGGGGATGTCTTCTAAACTGTGTCTAAGTGGTGGAAAATACCAGAGTCGCCTTGTGTTTTAA
Coding sequences of Glyma08g04760
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g04760.3 sequence type=CDS gene model=Glyma08g04760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGATGACGTCAAAGACAAGGTGAAGGGCTTCATGAAGAAAGTCAACAACCCTTTCTCTTCTTCCTCATCTGCCAAATTCAAGGGCCAAGGTAGAGTCCTTGGTTCTTCTTCTTCTACACCCGCTAATTCCAATCCTACCCCTCGCCCCTACCCTAATTCGCAGAAACCCTCCTCCTCTTCAGCTGTAACCAATCCCAAACCCTCGCCCCAGAAAACGGAGCAAAATAAAACCACCGATAAGCCTCGCAAAGATGATGGCTTTGACCCCTTTGATTCTTTGGTCACTAATTCCAATAGATCGCAAAATGGGTATTCGCTGAACGTGTTCGAATGCCCCATTTGTAAACAACCCTTTAGATCCGAAGAAGAGGTGTCTGCACACGTTGACGGTTGTTTGAATAACCCTGTTGAGCGTGGAAGTGATGATGGAAATGGGGTCTCAGAGAGTGATGGTGGGTCTAATGATACTAATACTGAATTGGAGGTTTGTGTTGGGACTTACATATCAGGGAAGCCATCTGAGGGATCGGTTGATGTGATCCTCAAACTGTTGAGGAATATTGGTAGGGAACCTGAGAATGTAAAGTTTAGGAGGATCAGGATGAATAATCCCAAGATTAAAGAGGCTGTTGGTGATGTTGCCGGGGGAGTTGAGTTGCTGAGTTTCGTAGGGTTTGAACTCAGGGAGGAGAATGGAGAGACATGGGCAGTGATGGAGTTTCCCTCTGAGGAACAAATAAAATTCATTCAGAGAGCAATAGTGTTGCTGGAATCACAACTTGTACAACAAGGACCTCCTAAGAGAGACGATTTGCCGTCTGCAACTTCTACCGAGATGGGTCCAAAGGTGAAGGTCTTCTTTGCTGTCCCTGAAAGTGTTGCAGCTAAAATTGAGCTGCCAGATTCCTTCTATAAACTTTCAGCTGAAGAGGTCAGAAGAGAAGCTGAATTAAGGAGAAAAAAGATTGCTGATTCTCAGCTTTTAATCCCCAAGTCACTTAAAGAAAAGCAAGCAAAAGTTTCCAGGAAGAGATACACAAAAACTATTATCAGGATTCAATTTCCAGATGGAGTTGTACTTCAAGGTGTATTTGCTCCATGGGAAACAACTATTGCTCTCTATGAGTTTGTCAGCTCAGCATTAAAAGAACCAGGTTTGGAATTTGAGCTAATGCATCCTGTACTTATCCAACGGCGCGTGATCCCCCATTTTCCGAAAGCAGGGGAAAATGCTAAAACAATAGAGGAAGAAGACCTAGTACCTTCTGCTCTAATTAAGTTCAAGCCTCTGGAAACAGATTCTGTTGTTTTCACCGGTCTCAGAAATGAATTGCTTGAAATCAGTGAACCACTTGTAAATGGTTAA
>Glyma08g04760.5 sequence type=CDS gene model=Glyma08g04760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGATGACGTCAAAGACAAGGTGAAGGGCTTCATGAAGAAAGTCAACAACCCTTTCTCTTCTTCCTCATCTGCCAAATTCAAGGGCCAAGGTAGAGTCCTTGGTTCTTCTTCTTCTACACCCGCTAATTCCAATCCTACCCCTCGCCCCTACCCTAATTCGCAGAAACCCTCCTCCTCTTCAGCTGTAACCAATCCCAAACCCTCGCCCCAGAAAACGGAGCAAAATAAAACCACCGATAAGCCTCGCAAAGATGATGGCTTTGACCCCTTTGATTCTTTGGTCACTAATTCCAATAGATCGCAAAATGGGTATTCGCTGAACGTGTTCGAATGCCCCATTTGTAAACAACCCTTTAGATCCGAAGAAGAGGTGTCTGCACACGTTGACGGTTGTTTGAATAACCCTGTTGAGCGTGGAAGTGATGATGGAAATGGGGTCTCAGAGAGTGATGGTGGGTCTAATGATACTAATACTGAATTGGAGGTTTGTGTTGGGACTTACATATCAGGGAAGCCATCTGAGGGATCGGTTGATGTGATCCTCAAACTGTTGAGGAATATTGGTAGGGAACCTGAGAATGTAAAGTTTAGGAGGATCAGGATGAATAATCCCAAGATTAAAGAGGCTGTTGGTGATGTTGCCGGGGGAGTTGAGTTGCTGAGTTTCGTAGGGTTTGAACTCAGGGAGGAGAATGGAGAGACATGGGCAGTGATGGAGTTTCCCTCTGAGGAACAAATAAAATTCATTCAGAGAGCAATAGTGTTGCTGGAATCACAACTTGTACAACAAGGACCTCCTAAGAGAGACGATTTGCCGTCTGCAACTTCTACCGAGATGGGTCCAAAGGCAGAAACAAAGCCGGTTGACAGACAAGTGAAGGTCTTCTTTGCTGTCCCTGAAAGTGTTGCAGCTAAAATTGAGCTGCCAGATTCCTTCTATAAACTTTCAGCTGAAGAGGTCAGAAGAGAAGCTGAATTAAGGAGAAAAAAGATTGCTGATTCTCAGCTTTTAATCCCCAAGTCACTTAAAGAAAAGCAAGCAAAAGTTTCCAGGAAGAGATACACAAAAACTATTATCAGGATTCAATTTCCAGATGGAGTTGTACTTCAAGGTGTATTTGCTCCATGGGAAACAACTATTGCTCTCTATGAGTTTGTCAGCTCAGCATTAAAAGAACCAGGTTTGGAATTTGAGCTAATGCATCCTGTACTTATCCAACGGCGCGTGATCCCCCATTTTCCGAAAGCAGGGGAAAATGCTAAAACAATAGAGGAAGAAGACCTAGTACCTTCTGCTCTAATTAAGTTCAAGCCTCTGGAAACAGATTCTGTTGTTTTCACCGGTCTCAGAAATGAATTGCTTGAAATCAGTGAACCACTTGTAAATGGTTAA
>Glyma08g04760.6 sequence type=CDS gene model=Glyma08g04760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGATGACGTCAAAGACAAGGTGAAGGGCTTCATGAAGAAAGTCAACAACCCTTTCTCTTCTTCCTCATCTGCCAAATTCAAGGGCCAAGGTAGAGTCCTTGGTTCTTCTTCTTCTACACCCGCTAATTCCAATCCTACCCCTCGCCCCTACCCTAATTCGCAGAAACCCTCCTCCTCTTCAGCTGTAACCAATCCCAAACCCTCGCCCCAGAAAACGGAGCAAAATAAAACCACCGATAAGCCTCGCAAAGATGATGGCTTTGACCCCTTTGATTCTTTGGTCACTAATTCCAATAGATCGCAAAATGGGTATTCGCTGAACGTGTTCGAATGCCCCATTTGTAAACAACCCTTTAGATCCGAAGAAGAGGTGTCTGCACACGTTGACGGTTGTTTGAATAACCCTGTTGAGCGTGGAAGTGATGATGGAAATGGGGTCTCAGAGAGTGATGGTGGGTCTAATGATACTAATACTGAATTGGAGGTTTGTGTTGGGACTTACATATCAGGGAAGCCATCTGAGGGATCGGTTGATGTGATCCTCAAACTGTTGAGGAATATTGGTAGGGAACCTGAGAATGTAAAGTTTAGGAGGATCAGGATGAATAATCCCAAGATTAAAGAGGCTGTTGGTGATGTTGCCGGGGGAGTTGAGTTGCTGAGTTTCGTAGGGTTTGAACTCAGGGAGGAGAATGGAGAGACATGGGCAGTGATGGAGTTTCCCTCTGAGGAACAAATAAAATTCATTCAGAGAGCAATAGTGTTGCTGGAATCACAACTTGTACAACAAGGACCTCCTAAGAGAGACGATTTGCCGTCTGCAACTTCTACCGAGATGGGTCCAAAGGCAGAAACAAAGCCGGTTGACAGACAAGTGAAGGTCTTCTTTGCTGTCCCTGAAAGTGTTGCAGCTAAAATTGAGCTGCCAGATTCCTTCTATAAACTTTCAGCTGAAGAGGTCAGAAGAGAAGCTGAATTAAGGAGAAAAAAGATTGCTGATTCTCAGCTTTTAATCCCCAAGTCACTTAAAGAAAAGCAAGCAAAAGTTTCCAGGAAGAGATACACAAAAACTATTATCAGGATTCAATTTCCAGATGGAGTTGTACTTCAAGGTGTATTTGCTCCATGGGAAACAACTATTGCTCTCTATGAGTTTGTCAGCTCAGCATTAAAAGAACCAGGTTTGGAATTTGAGCTAATGCATCCTGTACTTATCCAACGGCGCGTGATCCCCCATTTTCCGAAAGCAGGGGAAAATGCTAAAACAATAGAGGAAGAAGACCTAGTACCTTCTGCTCTAATTAAGTTCAAGCCTCTGGAAACAGATTCTGTTGTTTTCACCGGTCTCAGAAATGAATTGCTTGAAATCAGTGAACCACTTGTAAATGGTTAA
Predicted protein sequences of Glyma08g04760
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g04760.3 sequence type=predicted peptide gene model=Glyma08g04760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDDVKDKVKGFMKKVNNPFSSSSSAKFKGQGRVLGSSSSTPANSNPTPRPYPNSQKPSSSSAVTNPKPSPQKTEQNKTTDKPRKDDGFDPFDSLVTNSNRSQNGYSLNVFECPICKQPFRSEEEVSAHVDGCLNNPVERGSDDGNGVSESDGGSNDTNTELEVCVGTYISGKPSEGSVDVILKLLRNIGREPENVKFRRIRMNNPKIKEAVGDVAGGVELLSFVGFELREENGETWAVMEFPSEEQIKFIQRAIVLLESQLVQQGPPKRDDLPSATSTEMGPKVKVFFAVPESVAAKIELPDSFYKLSAEEVRREAELRRKKIADSQLLIPKSLKEKQAKVSRKRYTKTIIRIQFPDGVVLQGVFAPWETTIALYEFVSSALKEPGLEFELMHPVLIQRRVIPHFPKAGENAKTIEEEDLVPSALIKFKPLETDSVVFTGLRNELLEISEPLVNG*
>Glyma08g04760.5 sequence type=predicted peptide gene model=Glyma08g04760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDDVKDKVKGFMKKVNNPFSSSSSAKFKGQGRVLGSSSSTPANSNPTPRPYPNSQKPSSSSAVTNPKPSPQKTEQNKTTDKPRKDDGFDPFDSLVTNSNRSQNGYSLNVFECPICKQPFRSEEEVSAHVDGCLNNPVERGSDDGNGVSESDGGSNDTNTELEVCVGTYISGKPSEGSVDVILKLLRNIGREPENVKFRRIRMNNPKIKEAVGDVAGGVELLSFVGFELREENGETWAVMEFPSEEQIKFIQRAIVLLESQLVQQGPPKRDDLPSATSTEMGPKAETKPVDRQVKVFFAVPESVAAKIELPDSFYKLSAEEVRREAELRRKKIADSQLLIPKSLKEKQAKVSRKRYTKTIIRIQFPDGVVLQGVFAPWETTIALYEFVSSALKEPGLEFELMHPVLIQRRVIPHFPKAGENAKTIEEEDLVPSALIKFKPLETDSVVFTGLRNELLEISEPLVNG*
>Glyma08g04760.6 sequence type=predicted peptide gene model=Glyma08g04760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDDVKDKVKGFMKKVNNPFSSSSSAKFKGQGRVLGSSSSTPANSNPTPRPYPNSQKPSSSSAVTNPKPSPQKTEQNKTTDKPRKDDGFDPFDSLVTNSNRSQNGYSLNVFECPICKQPFRSEEEVSAHVDGCLNNPVERGSDDGNGVSESDGGSNDTNTELEVCVGTYISGKPSEGSVDVILKLLRNIGREPENVKFRRIRMNNPKIKEAVGDVAGGVELLSFVGFELREENGETWAVMEFPSEEQIKFIQRAIVLLESQLVQQGPPKRDDLPSATSTEMGPKAETKPVDRQVKVFFAVPESVAAKIELPDSFYKLSAEEVRREAELRRKKIADSQLLIPKSLKEKQAKVSRKRYTKTIIRIQFPDGVVLQGVFAPWETTIALYEFVSSALKEPGLEFELMHPVLIQRRVIPHFPKAGENAKTIEEEDLVPSALIKFKPLETDSVVFTGLRNELLEISEPLVNG*