Report for Sequence Feature Glyma08g04730
Feature Type: gene_model
Chromosome: Gm08
Start: 3368379
stop: 3371555
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g04730
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G01660 AT
Annotation by Michelle Graham. TAIR10: plasmodesmata-located protein 6 | chr2:290973-292496 REVERSE LENGTH=288
SoyBase E_val: 4.00E-114 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0009506 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PTHR11795 Panther
PROTEIN KINASE
JGI ISS
PTHR11795:SF83 Panther
RECEPTOR SERINE/THREONINE PROTEIN KINASE-RELATED
JGI ISS
PF01657 PFAM
Domain of unknown function DUF26
JGI ISS
UniRef100_B9SJ12 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: DUF26 domain-containing protein 1, putative n=1 Tax=Ricinus communis RepID=B9SJ12_RICCO
SoyBase E_val: 3.00E-135 ISS
UniRef100_UPI000189D8C7 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000189D8C7 related cluster n=1 Tax=unknown RepID=UPI000189D8C7
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g04730
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma08g04730
Paralog Evidence Comments
Glyma05g34990 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g04730 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g042600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g04730
Coding sequences of Glyma08g04730
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g04730.1 sequence type=CDS gene model=Glyma08g04730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCGAAACGCAAACATGGTTCTCGTTCTCCTTTTCCTTATGGCAATCTTCTCCGCCATGACCACTCCGTCAACCTCCGCGATCGACACCTTCATCTTCGGCGGCTGCTCCCAGGCCAAGTTCACGCCGGGTTCCGCCTACGAAAACACCGTCAACTCCCTCCTAACCTCGCTGGTCAACTCTGCGGCCTTCGCCAACTACAACAACTTCACCGTTCCAGCCTCTTCCGACACCGTCTACGGCCTCTTCCAGTGCCGTGGCGACCTCCCCAACGACCAGTGCTCGCGCTGCGTCTCGCGTGCGGTCACCCAGCTCGGCACCCTCTGCTTTGCCTCCTGCGGCGGTGCCTTGCAGCTCGACGGCTGTTTCGTCAAGTACGACAACACCACCTTCATTGGGGTTGAGGACAAGACCTTGGTCAGCAAGAAATGTGGGCCGTCCGTTGGGTTGACCTCCGATGCGCTGAGCCGGAGAGAAGCTGTGCTGGCATATTTGCAGACGTCCGATGGGGTTTACAAGACATTCAGAACGAGCGGTTATGGGGATTTCCAGGGTGTGGCGCAGTGCACCGGGGATTTGAGTCCCAGCCAGTGCCAGGATTGTCTTTCTGATTCCATCCAACGCTTCAAAACCGATTGCGGGCCCACTACCTGGGCTGAGATTTACTTGGCCAAGTGCTACGCGCGCTACTCAGAAGCTGGGACTCGCTCGCGTGCTAATAATAATGATGATAGCAATCACAATGATGATGAGATCGAGAAGACACTCGCTATTTTAATTGGACTCATTGCGGGGGTTGCTCTGATCATCGTTTTCCTTTCCTTCTTGTCCAAGGTCTGCGAAAAGCACAAAGGTGGTAAATAA
Predicted protein sequences of Glyma08g04730
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g04730.1 sequence type=predicted peptide gene model=Glyma08g04730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MRNANMVLVLLFLMAIFSAMTTPSTSAIDTFIFGGCSQAKFTPGSAYENTVNSLLTSLVNSAAFANYNNFTVPASSDTVYGLFQCRGDLPNDQCSRCVSRAVTQLGTLCFASCGGALQLDGCFVKYDNTTFIGVEDKTLVSKKCGPSVGLTSDALSRREAVLAYLQTSDGVYKTFRTSGYGDFQGVAQCTGDLSPSQCQDCLSDSIQRFKTDCGPTTWAEIYLAKCYARYSEAGTRSRANNNDDSNHNDDEIEKTLAILIGLIAGVALIIVFLSFLSKVCEKHKGGK*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
