Glyma08g04700 - SoyBase

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Report for Sequence Feature Glyma08g04700

Feature Type:	gene_model
Chromosome:	Gm08
Start:	3344399
stop:	3351568
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g04700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G02760	AT	Annotation by Michelle Graham. TAIR10: Class II aaRS and biotin synthetases superfamily protein \| chr3:597588-600650 REVERSE LENGTH=883	SoyBase	E_val: 0	ISS
GO:0006418	GO-bp	Annotation by Michelle Graham. GO Biological Process: tRNA aminoacylation for protein translation	SoyBase	N/A	ISS
GO:0006427	GO-bp	Annotation by Michelle Graham. GO Biological Process: histidyl-tRNA aminoacylation	SoyBase	N/A	ISS
GO:0048481	GO-bp	Annotation by Michelle Graham. GO Biological Process: ovule development	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0004812	GO-mf	Annotation by Michelle Graham. GO Molecular Function: aminoacyl-tRNA ligase activity	SoyBase	N/A	ISS
GO:0004821	GO-mf	Annotation by Michelle Graham. GO Molecular Function: histidine-tRNA ligase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
KOG1936	KOG	Histidyl-tRNA synthetase	JGI		ISS
PTHR11476	Panther	HISTIDYL-TRNA SYNTHETASE	JGI		ISS
PF00221	PFAM	Phenylalanine and histidine ammonia-lyase	JGI		ISS
PF00587	PFAM	tRNA synthetase class II core domain (G, H, P, S and T)	JGI		ISS
PF03129	PFAM	Anticodon binding domain	JGI		ISS
UniRef100_B9SHN6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Histidyl-tRNA synthetase, putative n=1 Tax=Ricinus communis RepID=B9SHN6_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI00023389E6	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023389E6 related cluster n=1 Tax=unknown RepID=UPI00023389E6	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g04700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g04700

Paralog	Evidence	Comments
Glyma05g35021	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g04700 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g042400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g04700

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g04700

Limit To All Plant Sequences

>Glyma08g04700.1   sequence type=CDS   gene model=Glyma08g04700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGAAGCTTCCGTAACGGTTGGAGGCAAGGCTTCCTCTATCTCTTCCTCCTCCGTCTTCGCCGTGGCCACGGGCCGCGCTCACGTGCGGATCGATTCTTCCGCGCTCGATAGACTCCCCAAGACCGAAACGACGTCGGCTTCGCCTCAGCTGCGCATCAGCGTCCCCGATTTCCTAACCCTAGAGGAATCCCGCGCCTTCCTTCTTGTCCTCCTCAACAACCTCGTCCTCTCCAACGCCCCCTCCCGCGTTCCCCTCCTCCTCTCCCAAACCCTCAATTCCAACCCTCCCACCTTCCATTTCCACGATGGTGCTGACGTCACCCAACAAGACCTACTCACCTCTTCCACGCTGCTCGCTGTCTCCGCCATTGTCGACCACCAGTCCGCCGCGCTCTCCGCCTTCGCCGACGTCGCCGCCGCCTTCTCCTGCGAGGCCTTGAAGGCCGACGCAACGCCCTTCAATCTCATGGATTCCGGCGACGGACACACCTCGAAGGACGAGGTCGCCGTCGCCGCCAACATTCGGGTTCTGCTCAACGGATCCAAGTCCGTCGGCAAGGAGAAGATTCGATCCGTCGCGAGGGTTCCCAAGGTTCACGGGAGTGTAAGGGAGCAGGCCAAAGCCTTGCACTCCAGAATGCGTGTTGAGTTGAATTCGGGGGTTAAGGGTGTCGTTGGAAGTGAGGAAGCTTTCGCACACGAGGTCTTTGTGCTGTTGGGCTTTGTGTGGAAAGTTGTGGCGTGGGAAGCTGTGACTGCGGTTCCGGTGCTTCAGGCTGCTGAGTTGAATGAGGTGATCGAAGGTGTCAAGGAGATCAAAGTAGAGGATAACGCGAAAGAAGTGGAGAAGAAGAAGAAGACAGTTGTTTTGGGGAAAGGGACTAGCTCGATTTTGGCATTGATCAAGGAGAGGTTACTGAGTGGTGGACAGATTGCTTTGGGGACCTGGGTGGGAGATTTTCTATCACTTTTGGATTTGGCTAAGCCCGAGTTTAATGAATTTTTATTGAAAGTAAAGGATGTTGTAGACAGCAATGAAAGCAGGAGATTACCCAAGATTCCTAAGGGGACTCGTGATTTTGCTAAAGAACAAATGACAATTAGAAAGAAAGCTTTTGCAATAATAGAAGAAGTTTTTGAGAGGCATGGTGCCACTGCCTTAGATACTCCTGTTTTTGAATTGCGAGAAACTCTCATGGGAAAATATGGAGAAGATTCAAAGTTGATTTATGATCTTGCTGACCAGGGTGGGGAGCTTCTTTCTTTGAGGTATGACTTGACAGTTCCATTTGCTAGGTTTGTGGCTATGAATGGTCTGGTATCTTTCAAAAGGTACCAAATAGCCAAGGTTTACAGAAGGGATAACCCATCCAAAGGAAGATACCGTGAATTTTATCAATGTGACTTTGATATTGCTGGTACTCCTGGTCTATCTGAAATTATGGGTCCAGACTTTGAGGTTGTTAGGATTTTGACTGAACTACTTGATGAGCTGGACATTGGGGAATATGAGATAAAGTTGAATCATAGAAAGTTACTGGATGGCATGATGCAAATATGTGGAGTACCTCCTGAAAAGTTTAGGACAATATGTTCAAGCATTGACAAGTTAGACAAACAGTCTTTTCAACAGATAAGAAAAGAAATGGTGGAAGAAAAAGGATTAACCGCTGAGACAGCTGACAGAATTGAAACTTTTGTTAAAGAAAAAGGATCTCCTTTAGCATTATTATCTAAATTTAAACAAGAGGGTAGTGATTTCTCTAAACACAAAGGAGCTTCTGTGGCATTGGAGGAGCTGGAAATTTTATTTATAGCTCTGGAAAAATCAAAACGTATTGATAAAGTGGTTTTTGACTTGAGTCTTGCCAGAGGTCTGGATTATTACACTGGAGTTATATTTGAAGCTGTTTTTAAAGGAGGCACTCAGGTTGGTTCAATTGCTGCTGGTGGCCGATATGATAACCTTATAGGGATGTTTGGCTCAAGGTCAGTGCCTGCAGTTGGTGTAAGTCTGGGAATTGAAAGAGTATTTGCCATAATGGAGCAACAACAGAAGGATCAGAACCAGATGGCTCGTCCAACCAAGACAGAAGTCCTAGTGAGCATAGTGGGGAATGACTTTACACTTGCTGCAGAGCTAGCCGGAGAACTGTGGGATGCTAGGGTGAAAGCAGAATTCTTGGTCAATAAAAGAAGAACAAAGCACTTCGAATATGCAAAAGAATCAAGGATCCCTTGGATAGTTCTTGTTTATGAGCAGGAAATAAAAGAAGAAGGCGTGGTGCAATTGAAAAATCTCGAGGCTAATATTGATATTAAGATTTCTAGAGCAGAATTTGTGGAGGAACTTCGTAGACGGTTATACCCTTAA

Predicted protein sequences of Glyma08g04700

Limit To All Plant Sequences

>Glyma08g04700.1   sequence type=predicted peptide   gene model=Glyma08g04700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEASVTVGGKASSISSSSVFAVATGRAHVRIDSSALDRLPKTETTSASPQLRISVPDFLTLEESRAFLLVLLNNLVLSNAPSRVPLLLSQTLNSNPPTFHFHDGADVTQQDLLTSSTLLAVSAIVDHQSAALSAFADVAAAFSCEALKADATPFNLMDSGDGHTSKDEVAVAANIRVLLNGSKSVGKEKIRSVARVPKVHGSVREQAKALHSRMRVELNSGVKGVVGSEEAFAHEVFVLLGFVWKVVAWEAVTAVPVLQAAELNEVIEGVKEIKVEDNAKEVEKKKKTVVLGKGTSSILALIKERLLSGGQIALGTWVGDFLSLLDLAKPEFNEFLLKVKDVVDSNESRRLPKIPKGTRDFAKEQMTIRKKAFAIIEEVFERHGATALDTPVFELRETLMGKYGEDSKLIYDLADQGGELLSLRYDLTVPFARFVAMNGLVSFKRYQIAKVYRRDNPSKGRYREFYQCDFDIAGTPGLSEIMGPDFEVVRILTELLDELDIGEYEIKLNHRKLLDGMMQICGVPPEKFRTICSSIDKLDKQSFQQIRKEMVEEKGLTAETADRIETFVKEKGSPLALLSKFKQEGSDFSKHKGASVALEELEILFIALEKSKRIDKVVFDLSLARGLDYYTGVIFEAVFKGGTQVGSIAAGGRYDNLIGMFGSRSVPAVGVSLGIERVFAIMEQQQKDQNQMARPTKTEVLVSIVGNDFTLAAELAGELWDARVKAEFLVNKRRTKHFEYAKESRIPWIVLVYEQEIKEEGVVQLKNLEANIDIKISRAEFVEELRRRLYP*

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