Glyma08g04680 - SoyBase

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Report for Sequence Feature Glyma08g04680

Feature Type:	gene_model
Chromosome:	Gm08
Start:	3335225
stop:	3338991
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g04680

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G21150	AT	Annotation by Michelle Graham. TAIR10: XAP5 family protein \| chr2:9065397-9067921 FORWARD LENGTH=337	SoyBase	E_val: 0	ISS
GO:0009637	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to blue light	SoyBase	N/A	ISS
GO:0009640	GO-bp	Annotation by Michelle Graham. GO Biological Process: photomorphogenesis	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0009845	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed germination	SoyBase	N/A	ISS
GO:0009873	GO-bp	Annotation by Michelle Graham. GO Biological Process: ethylene mediated signaling pathway	SoyBase	N/A	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0009933	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem structural organization	SoyBase	N/A	ISS
GO:0010099	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of photomorphogenesis	SoyBase	N/A	ISS
GO:0010114	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to red light	SoyBase	N/A	ISS
GO:0010162	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed dormancy process	SoyBase	N/A	ISS
GO:0010182	GO-bp	Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway	SoyBase	N/A	ISS
GO:0010228	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem	SoyBase	N/A	ISS
GO:0016567	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein ubiquitination	SoyBase	N/A	ISS
GO:0019915	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid storage	SoyBase	N/A	ISS
GO:0042752	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of circadian rhythm	SoyBase	N/A	ISS
GO:0050826	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to freezing	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2894	KOG	Uncharacterized conserved protein XAP-5	JGI		ISS
PTHR12722	Panther	XAP-5 PROTEIN-RELATED	JGI		ISS
PF04921	PFAM	XAP5 protein	JGI		ISS
UniRef100_G7LAJ6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein XAP5 CIRCADIAN TIMEKEEPER n=2 Tax=Medicago truncatula RepID=G7LAJ6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KQ65	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KQ65_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g04680

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g04680

Paralog	Evidence	Comments
Glyma05g35040	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g04680 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g042200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g04680

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g04680

Limit To All Plant Sequences

>Glyma08g04680.2   sequence type=transcript   gene model=Glyma08g04680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TATAACTTTGAATAAAAATTAAAAGTAATTTGGGTTGGTGTGGGGCTTTTGGTAGTATAATGGGCCGAAATGTGAAATGGAAGGCCATAGCAGTAGTGAGTGGAGAGCGAGAGGCATAACATAACATAAGACCACAAAGCTGTGTTGCGCGTTGAAGAGCGAAGAAGGAAGAAGATGTCGGGTATGGGAGATGGGTACGTGGGCACCGCCCAAGACGCGGTGAGGATTCGACGGTTGGAGAAGCAGAGAGAAGCGGAGCGTCGCAAAATCCAAGAGCTGAAAACCAAGTCTGCCTCCGCCAAGGACCAACCCGGTCTTCTCCAATTCGGTTCCAGCACTTCCGAGATTCTAGAGACTGCCTTTAAGAAGGAAACTGTGGGTTTGGTCACTAGAGAGCAGTATGTAGAAAAGAGGGTTAATATTCAGAGCAAAATTGAGGAAGAAGAGAAGGAGAAACTTCAGAAGCAACAACAAGAAGAGGAGGAGCTTCAATTACAAAAGCGGAAAAAGAGGAAGATCAGGGGCAATTCTCGATTGTCCTTTGCTGAGGATATTGACAATGAACCCCAAGAGGACGAACCACATCACAGTAAGGATAATCTGGAGGCAAATAGATTACGGTGTGGTAAGCTTGGCAAAGACCCTACTGTTGAAACTAGCTTTCTACCTGACAGTGAGCGAGAGGCTGAGGAGCAAGCTGAGCGTGAAAGGCTGCGCAAACAGTGGCTTCGTGAGCAGGAGCAAATTCGAAATGAGCCTCTTGAAATCACATACAGCTATTGGGATGGAACTGGCCACAGGCGTGTGATCCAGCAACATAGCTTCTATGAGCTAATTGTGAACAAAGCTAGAGGCAAAAGTGGACCGCTTTTTCATTTTGATGTGCATGAGGATGTACGAACAATTGCTGATGCCACTATAGAGAAGGATGAGTCTCATGCTGGGAAGGTTGTAGAAAGGCATTGGTATGAAAAGAACAAGCATATATTTCCTGCTTCAAGATGGGAGATATATGATCCAACGAAGAAATGGGAACGTTATACTATCCACGGGGATTGATTTGAGGCTGCCAAATAATTTGCATTAGCATTTCCTGTATTGACATTTAATTTGGTCATGCGTTTGTACGCCTTGGTGATAATTATGCTATTGTTAGTCATTTCAGTGTTTAGAATGACTAGGTTTTGTGTTTCTGTTATTCATTACAGACAACATGGACAATTAGTCAGATCTATATTACAGTGGATTTCGTGTCAAATAAGCTAACTTTAATCTATTTACTAGCTAACGTACTTGTTTAACGAAATTAAGCATTTGGTAATTAAGCTTTCAACAACG

>Glyma08g04680.3   sequence type=transcript   gene model=Glyma08g04680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TATAACTTTGAATAAAAATTAAAAGTAATTTGGGTTGGTGTGGGGCTTTTGGTAGTATAATGGGCCGAAATGTGAAATGGAAGGCCATAGCAGTAGTGAGTGGAGAGCGAGAGGCATAACATAACATAAGACCACAAAGCTGTGTTGCGCGTTGAAGAGCGAAGAAGGAAGAAGATGTCGGGTATGGGAGATGGGTACGTGGGCACCGCCCAAGACGCGGTGAGGATTCGACGGTTGGAGAAGCAGAGAGAAGCGGAGCGTCGCAAAATCCAAGAGCTGAAAACCAAGTCTGCCTCCGCCAAGGACCAACCCGGTCTTCTCCAATTCGGTTCCAGCACTTCCGAGATTCTAGAGACTGCCTTTAAGAAGGAAACTGTGGGTTTGGTCACTAGAGAGCAGTATGTAGAAAAGAGGGTTAATATTCAGAGCAAAATTGAGGAAGAAGAGAAGGAGAAACTTCAGAAGCAACAACAAGAAGAGGAGGAGCTTCAATTACAAAAGCGGAAAAAGAGGAAGATCAGGGGCAATTCTCGATTGTCCTTTGCTGAGGATATTGACAATGAACCCCAAGAGGACGAACCACATCACAGTAAGGATAATCTGGAGGCAAATAGATTACGGTGTGGTAAGCTTGGCAAAGACCCTACTGTTGAAACTAGCTTTCTACCTGACAGTGAGCGAGAGGCTGAGGAGCAAGCTGAGCGTGAAAGGCTGCGCAAACAGTGGCTTCGTGAGCAGGAGCAAATTCGAAATGAGCCTCTTGAAATCACATACAGCTATTGGGATGGAACTGGCCACAGGCGTGTGATCCAGGTACGCAAGGGTGACAGCATAGGAGAGTTTCTTCGAGCAGTTCAACAGCAACTTGCTCCTGAATTCCGAGAGATTCGAACAACATCAGTAGAAAATTTGTTATACGTGAAAGAAGACCTTATCATTCCTCATGTATTAGCTTTTAATTTCAGAAACTCTGTGTGCAACTTGCTATCTTGTTTGTGTGTGTATAAGCTATGTTAACATTATTTTAACCAAAGGATATCTGCTAACTTATTTACCTGTTTCCATGTGTATTACAGCAACATAGCTTCTATGAGCTAATTGTGAACAAAGCTAGAGGCAAAAGTGGACCGCTTTTTCATTTTGATGTGCATGAGGATGTACGAACAATTGCTGATGCCACTATAGAGAAGGATGAGTCTCATGCTGGGAAGGTTGTAGAAAGGCATTGGTATGAAAAGAACAAGCATATATTTCCTGCTTCAAGATGGGAGGTACTCTCTCTCTCTCTCTCCCATGTGTGTGGATAGTGCATGAATTGGACTTTTCACTCTTTTGTCCTCCTCTTGGCTGCATTTGTAGTGATATTTAATAAATCTCTATTAGATAGGATAGTCTGAACTGGCTATTTATTATAAGTCTGTCAGATTAGAGTGCATAAGATGTGTTGCATTTTCCTGCTTAGCTTCTGATTCTGCCATTTTTTCTCCTTCTATTGCAGATATATGATCCAACGAAGAAATGGGAACGTTATACTATCCACGGGGATTGATTTGAGGCTGCCAAATAATTTGCATTAGCATTTCCTGTATTGACATTTAATTTGGTCATGCGTTTGTACGCCTTGGTGATAATTATGCTATTGTTAGTCATTTCAGTGTTTAGAATGACTAGGTTTTGTGTTTCTGTTATTCATTACAGACAACATGGACAATTAGTCAGATCTATATTACAGTGGATTTCGTGTCAAATAAGCTAACTTTAATCTATTTACTAGCTAACGTACTTGTTTAACGAAATTAAGCATTTGGTAATTAAGCTTTCAACAACG

Coding sequences of Glyma08g04680

Limit To All Plant Sequences

>Glyma08g04680.1   sequence type=CDS   gene model=Glyma08g04680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGGGTATGGGAGATGGGTACGTGGGCACCGCCCAAGACGCGGTGAGGATTCGACGGTTGGAGAAGCAGAGAGAAGCGGAGCGTCGCAAAATCCAAGAGCTGAAAACCAAGTCTGCCTCCGCCAAGGACCAACCCGGTCTTCTCCAATTCGGTTCCAGCACTTCCGAGATTCTAGAGACTGCCTTTAAGAAGGAAACTGTGGGTTTGGTCACTAGAGAGCAGTATGTAGAAAAGAGGGTTAATATTCAGAGCAAAATTGAGGAAGAAGAGAAGGAGAAACTTCAGAAGCAACAACAAGAAGAGGAGGAGCTTCAATTACAAAAGCGGAAAAAGAGGAAGATCAGGGGCAATTCTCGATTGTCCTTTGCTGAGGATATTGACAATGAACCCCAAGAGGACGAACCACATCACAGTAAGGATAATCTGGAGGCAAATAGATTACGGTGTGGTAAGCTTGGCAAAGACCCTACTGTTGAAACTAGCTTTCTACCTGACAGTGAGCGAGAGGCTGAGGAGCAAGCTGAGCGTGAAAGGCTGCGCAAACAGTGGCTTCGTGAGCAGGAGCAAATTCGAAATGAGCCTCTTGAAATCACATACAGCTATTGGGATGGAACTGGCCACAGGCGTGTGATCCAGGTACGCAAGGGTGACAGCATAGGAGAGTTTCTTCGAGCAGTTCAACAGCAACTTGCTCCTGAATTCCGAGAGATTCGAACAACATCAGTAGAAAATTTGTTATACGTGAAAGAAGACCTTATCATTCCTCATCAACATAGCTTCTATGAGCTAATTGTGAACAAAGCTAGAGGCAAAAGTGGACCGCTTTTTCATTTTGATGTGCATGAGGATGTACGAACAATTGCTGATGCCACTATAGAGAAGGATGAGTCTCATGCTGGGAAGGTTGTAGAAAGGCATTGGTATGAAAAGAACAAGCATATATTTCCTGCTTCAAGATGGGAGATATATGATCCAACGAAGAAATGGGAACGTTATACTATCCACGGGGATTGA

>Glyma08g04680.2   sequence type=CDS   gene model=Glyma08g04680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGGGTATGGGAGATGGGTACGTGGGCACCGCCCAAGACGCGGTGAGGATTCGACGGTTGGAGAAGCAGAGAGAAGCGGAGCGTCGCAAAATCCAAGAGCTGAAAACCAAGTCTGCCTCCGCCAAGGACCAACCCGGTCTTCTCCAATTCGGTTCCAGCACTTCCGAGATTCTAGAGACTGCCTTTAAGAAGGAAACTGTGGGTTTGGTCACTAGAGAGCAGTATGTAGAAAAGAGGGTTAATATTCAGAGCAAAATTGAGGAAGAAGAGAAGGAGAAACTTCAGAAGCAACAACAAGAAGAGGAGGAGCTTCAATTACAAAAGCGGAAAAAGAGGAAGATCAGGGGCAATTCTCGATTGTCCTTTGCTGAGGATATTGACAATGAACCCCAAGAGGACGAACCACATCACAGTAAGGATAATCTGGAGGCAAATAGATTACGGTGTGGTAAGCTTGGCAAAGACCCTACTGTTGAAACTAGCTTTCTACCTGACAGTGAGCGAGAGGCTGAGGAGCAAGCTGAGCGTGAAAGGCTGCGCAAACAGTGGCTTCGTGAGCAGGAGCAAATTCGAAATGAGCCTCTTGAAATCACATACAGCTATTGGGATGGAACTGGCCACAGGCGTGTGATCCAGCAACATAGCTTCTATGAGCTAATTGTGAACAAAGCTAGAGGCAAAAGTGGACCGCTTTTTCATTTTGATGTGCATGAGGATGTACGAACAATTGCTGATGCCACTATAGAGAAGGATGAGTCTCATGCTGGGAAGGTTGTAGAAAGGCATTGGTATGAAAAGAACAAGCATATATTTCCTGCTTCAAGATGGGAGATATATGATCCAACGAAGAAATGGGAACGTTATACTATCCACGGGGATTGA

>Glyma08g04680.3   sequence type=CDS   gene model=Glyma08g04680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGGGTATGGGAGATGGGTACGTGGGCACCGCCCAAGACGCGGTGAGGATTCGACGGTTGGAGAAGCAGAGAGAAGCGGAGCGTCGCAAAATCCAAGAGCTGAAAACCAAGTCTGCCTCCGCCAAGGACCAACCCGGTCTTCTCCAATTCGGTTCCAGCACTTCCGAGATTCTAGAGACTGCCTTTAAGAAGGAAACTGTGGGTTTGGTCACTAGAGAGCAGTATGTAGAAAAGAGGGTTAATATTCAGAGCAAAATTGAGGAAGAAGAGAAGGAGAAACTTCAGAAGCAACAACAAGAAGAGGAGGAGCTTCAATTACAAAAGCGGAAAAAGAGGAAGATCAGGGGCAATTCTCGATTGTCCTTTGCTGAGGATATTGACAATGAACCCCAAGAGGACGAACCACATCACAGTAAGGATAATCTGGAGGCAAATAGATTACGGTGTGGTAAGCTTGGCAAAGACCCTACTGTTGAAACTAGCTTTCTACCTGACAGTGAGCGAGAGGCTGAGGAGCAAGCTGAGCGTGAAAGGCTGCGCAAACAGTGGCTTCGTGAGCAGGAGCAAATTCGAAATGAGCCTCTTGAAATCACATACAGCTATTGGGATGGAACTGGCCACAGGCGTGTGATCCAGGTACGCAAGGGTGACAGCATAGGAGAGTTTCTTCGAGCAGTTCAACAGCAACTTGCTCCTGAATTCCGAGAGATTCGAACAACATCAGTAGAAAATTTGTTATACGTGAAAGAAGACCTTATCATTCCTCATGTATTAGCTTTTAATTTCAGAAACTCTGTGTGCAACTTGCTATCTTGTTTGTGTGTGTATAAGCTATGTTAA

Predicted protein sequences of Glyma08g04680

Limit To All Plant Sequences

>Glyma08g04680.1   sequence type=predicted peptide   gene model=Glyma08g04680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSASAKDQPGLLQFGSSTSEILETAFKKETVGLVTREQYVEKRVNIQSKIEEEEKEKLQKQQQEEEELQLQKRKKRKIRGNSRLSFAEDIDNEPQEDEPHHSKDNLEANRLRCGKLGKDPTVETSFLPDSEREAEEQAERERLRKQWLREQEQIRNEPLEITYSYWDGTGHRRVIQVRKGDSIGEFLRAVQQQLAPEFREIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLFHFDVHEDVRTIADATIEKDESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYTIHGD*

>Glyma08g04680.2   sequence type=predicted peptide   gene model=Glyma08g04680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSASAKDQPGLLQFGSSTSEILETAFKKETVGLVTREQYVEKRVNIQSKIEEEEKEKLQKQQQEEEELQLQKRKKRKIRGNSRLSFAEDIDNEPQEDEPHHSKDNLEANRLRCGKLGKDPTVETSFLPDSEREAEEQAERERLRKQWLREQEQIRNEPLEITYSYWDGTGHRRVIQQHSFYELIVNKARGKSGPLFHFDVHEDVRTIADATIEKDESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYTIHGD*

>Glyma08g04680.3   sequence type=predicted peptide   gene model=Glyma08g04680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSASAKDQPGLLQFGSSTSEILETAFKKETVGLVTREQYVEKRVNIQSKIEEEEKEKLQKQQQEEEELQLQKRKKRKIRGNSRLSFAEDIDNEPQEDEPHHSKDNLEANRLRCGKLGKDPTVETSFLPDSEREAEEQAERERLRKQWLREQEQIRNEPLEITYSYWDGTGHRRVIQVRKGDSIGEFLRAVQQQLAPEFREIRTTSVENLLYVKEDLIIPHVLAFNFRNSVCNLLSCLCVYKLC*

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