SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G18370 | AT | Annotation by Michelle Graham. TAIR10: C2 domain-containing protein | chr3:6306362-6310256 FORWARD LENGTH=815 | SoyBase | E_val: 0 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG1030 | KOG | Predicted Ca2+-dependent phospholipid-binding protein | JGI | ISS | |
| PTHR10024 | Panther | SYNAPTOTAGMIN | JGI | ISS | |
| PTHR10024:SF126 | Panther | C2 DOMAIN-CONTAINING PROTEIN | JGI | ISS | |
| PTHR10774 | Panther | CALCIUM-DEPENDENT LIPID-BINDING PROTEIN (CALB RELATED) | JGI | ISS | |
| PF00168 | PFAM | C2 domain | JGI | ISS | |
| UniRef100_G7L9Q9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Plant synaptotagmin n=1 Tax=Medicago truncatula RepID=G7L9Q9_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233882D | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233882D related cluster n=1 Tax=unknown RepID=UPI000233882D | SoyBase | E_val: 0 | ISS |
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Glyma08g04640 not represented in the dataset |
Glyma08g04640 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g041800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g04640.2 sequence type=transcript gene model=Glyma08g04640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TGTTGTTATTTTATTTTTGACCACAGAAATTGGGTAGTTTTGATGAGATACCACTTGCAATTATGTTGTGCCAACAACCTTTCAAAAGGTCATAGTCGATGATGTTTACTGTTGTCACTGACTTTGCTGTCATTTCCACTTCCATACTTGTTAGTTTTCTCAGATTCCTCAATTCACTCACAAATAATATTCCATTCTCCATTTTCCAGGAATATGCATTTCTTGCTCTGTGCTCTTTCCTTTACTTTATACTATTTATTTCATGTCTCCCTCCTCCCAAACACACGGTTTTCATAGGAACTAGGAAGTAAAATCAATCCACAAGATCAGAAAAAACAGGAAATTGGTTTTAATTATTTTCCTCACTGAAATGAGTAGTAGTAAGAAAAGGTTCATTCCTATTAATCTGGAAGATGCTGCAGTGGACTTGTTAAACCATGTGGTGAAGTTGAAGGAGAAGGGATGGATTCCACTCTTCATTCCACTCATTTTGATTGCTTGGGCTATTCACAGATGGCTCTTCTCTTTCTCCAATTGGCTTCCCCTTGTACTTGCTCTATGGGCATCTATGCAATATGGAAATTATCAGCGCAAACTACTTGAGGAAGAGTTGAATAAGAAATGGAAACGGATCCTACTCAACACCTCGCCCATGACACCATTAGAACACTGTGAGTGGTTGAATCTGCTATTGACACAAATTTGGTCCAACTATTTTAACCCAAAGTTCTCAAGAAGGTTAAAAGCCATAGTTGAGAAACGGTTAAAGCTCCGGAAACCAAGATTTATAGAAAAGGTTGAGGTCCAAGAGTTTTCACTTGGATCATGCCCTCCAAGTTTGGGTCTTCAAGGGATGCGATGGTCAACCTCTGGTGGTCAGCGAGTCCTCAAAACGAGTTTCGATTGGGACACGAGTGAAATGAGCATTTTGATGCTTGCTAAGCTTTCCGTTGGAACAGCCAGAATTGTGATTAACAGTCTTCATATTAAGGGTGATCTTCTGGTGACACCAATTCTAGATGGAAAAGCACTTTTGTATTCCTTTCTATCAATACCTGAGGTGAAAATAGGAATTGCCTTTGGAAGTGGAGCAAGCCAATCAGCCACTGAGTTTCCTGGTGTTTCTTCATGGCTGAATAAACTTTTTACTGATACCTTAGCTAAAACCATGGTGGAACCTCGCCGTCGTTGTTTCAGTTTGCCTGTGGTTGATTTGAGGAAAACTGCTGTTGGAGGCATTATATATGTGTCAGTGATTTCAGCAAACAAACTTTCTAGGAGTTGCTTCAAGAGTAGCCCATCTTTGAGGCAACAAAATAGCACAATCAATGGATATTCAGAAAACAACCTGGATGACAATGACCTACAGACATTTGTAGAGGTAGAAGTGGAGGAATTGACAAGGAGGACGGGTCTGAGCCATGGTTCAAATCCAATGTGGGATACAACATTTAATATGGTTTTACATGATAATACAGGAATTGTTCGCTTCAATCTTTATGAGTGTCCCTCAAGTGGTGTTAAGTGTGACCACCTAGCAAGTTGTGAAATCAAGATGAGGCATGTTGAAGATGATTCAACAATAATGTGGGCAATAGGACCTGATTCTAGTGCAATAGCAAAGCATGCAAAGTTTTGCGGAGATGAAGTTGAAATGGTTGTCCCATTTGAGGGGACCAACTCAGTAGAGTTAAAGGTGAAGTTTGTAGTAAAAGAGTGGCAGTTTTCTGATGGTTCGCATAGCTTGAACAGCCTCCGTTCTAATTCTCAGCGATCACTTATTGGATCATCAAGTCTTCTGTCAAAAACTGGAAGGAAACTTAAGATAACTGTTGTAGAAGCAAAGGATCTCGCTGCAAAAGACAAATCTGAAAAAATTAACCCATACATTAAATTGCTATATGGAAAGGTTGTCAAGAAAACAAAGGTTGCTCTTACTACTACTAGTACTACTACAAATCCTGTCTGGAATCAATCATTTGAATTTGATGAGAATGATGGTGATGAATACCTAAATGTAAAATGCTTTAGTGAAGAAATTTTTGGAGATGAAAATATTGGTAGTGCAAATGTAAATTTGGAAGGACTGGGGGATGGGTCAATCAAGGTTGAATGGATCCCTCTTGAAGGAGTGAGTTCGGGTGAATTGAAGCTTAAAATTGAAGTAGTTAAGGTGGAGGACCAAGAAGGATCAAGGGTATGCTTCTTCAACAGGAAATTAGTAATTCTTTTAAATAAATTATAAAAAAAAATATACAAAGCTAATATTTGGTCTATTATCACTTCAGTTATTTATCCATGCTGAAATTTCTCTGGCACTTTCATTCTAAGTTCTAACACGTACTAATCCTTTGATAAGCACAGGGTTCAACTAATGGTTGGATAGAACTTGTTGTGATTGAAGCGAGGGATCTTATTGCTGCTGATCTTCGAGGGACAAGTGATCCTTATGTGAGGGTAAACTACGGAAACTCGAAGAAAAGGACAAAGGTTATACACAAAACACTCAACCCTCGTTGGAACCAGACATTAGAGTTCCTTGACGATGGCAGTCCCTTGATACTGCATGTTAAGGACCACAATGCTTTACTACCCGAATCAAGTATAGGCGAAGGTGTTGTAGAATATCAAAGGTTGCCTCCAAACCAGATGTCTGACAAGTGGATACCTCTGCAAGGGGTGAAAAGTGGTGAGATCCACATCCAAATTACAAGAAAAGTTCCAGAAATGCAAACAAGACATACTCTAGACTCTCAACCCTCTTCGTTAAGTAAATCACACCAAATTCCTACCCAGATGAGAGAGATGATGAAAAAGTTTCGATCATTAATAGAGGATGAAAATCTTGAAGGATTAACAACAACTTTGAGTGAGTTAGAAAGTCTAGAGGATACACAGGAAGGGTATATAACACAGTTGGAGACAGAGCAAATGCTTCTACTCAGCAAAATAAATGAACTGGGTCGGGAGATCATCAATTCTTCTTCCCGCGCTAGTAGTAGTCCTTCTCAAAGTGGAATTTGACCCTCATGAGCATCATCTACCTAACGTTATCCGTAGTTGATACTTTGACTTTCCCATGCAAAATATTGCTCATGGGAATGGGAATCATAACGTACAGACTTTTTTTATTTTATCCAAGAATTCTTGTGTAGTTGCCCCTCACATAGCAACGGTATATGTTTAATTGATCAATAAATTGCAACGAGTTTATGTTTCTCTTGGGTTCGTTAAATTACAAAACACAAATCATCAATCACAAGCTCTATTTCTTTCTTGCAATACAATTCACCCCAATTTATTCTCTTATCTTGTCTCCCTTTCTGCTTGTAAATTCATAGTG
>Glyma08g04640.1 sequence type=CDS gene model=Glyma08g04640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTAGTAGTAAGAAAAGGTTCATTCCTATTAATCTGGAAGATGCTGCAGTGGACTTGTTAAACCATGTGGTGAAGTTGAAGGAGAAGGGATGGATTCCACTCTTCATTCCACTCATTTTGATTGCTTGGGCTATTCACAGATGGCTCTTCTCTTTCTCCAATTGGCTTCCCCTTGTACTTGCTCTATGGGCATCTATGCAATATGGAAATTATCAGCGCAAACTACTTGAGGAAGAGTTGAATAAGAAATGGAAACGGATCCTACTCAACACCTCGCCCATGACACCATTAGAACACTGTGAGTGGTTGAATCTGCTATTGACACAAATTTGGTCCAACTATTTTAACCCAAAGTTCTCAAGAAGGTTAAAAGCCATAGTTGAGAAACGGTTAAAGCTCCGGAAACCAAGATTTATAGAAAAGGTTGAGGTCCAAGAGTTTTCACTTGGATCATGCCCTCCAAGTTTGGGTCTTCAAGGGATGCGATGGTCAACCTCTGGTGGTCAGCGAGTCCTCAAAACGAGTTTCGATTGGGACACGAGTGAAATGAGCATTTTGATGCTTGCTAAGCTTTCCGTTGGAACAGCCAGAATTGTGATTAACAGTCTTCATATTAAGGGTGATCTTCTGGTGACACCAATTCTAGATGGAAAAGCACTTTTGTATTCCTTTCTATCAATACCTGAGGTGAAAATAGGAATTGCCTTTGGAAGTGGAGCAAGCCAATCAGCCACTGAGTTTCCTGGTGTTTCTTCATGGCTGAATAAACTTTTTACTGATACCTTAGCTAAAACCATGGTGGAACCTCGCCGTCGTTGTTTCAGTTTGCCTGTGGTTGATTTGAGGAAAACTGCTGTTGGAGGCATTATATATGTGTCAGTGATTTCAGCAAACAAACTTTCTAGGAGTTGCTTCAAGAGTAGCCCATCTTTGAGGCAACAAAATAGCACAATCAATGGATATTCAGAAAACAACCTGGATGACAATGACCTACAGACATTTGTAGAGGTAGAAGTGGAGGAATTGACAAGGAGGACGGGTCTGAGCCATGGTTCAAATCCAATGTGGGATACAACATTTAATATGGTTTTACATGATAATACAGGAATTGTTCGCTTCAATCTTTATGAGTGTCCCTCAAGTGGTGTTAAGTGTGACCACCTAGCAAGTTGTGAAATCAAGATGAGGCATGTTGAAGATGATTCAACAATAATGTGGGCAATAGGACCTGATTCTAGTGCAATAGCAAAGCATGCAAAGTTTTGCGGAGATGAAGTTGAAATGGTTGTCCCATTTGAGGGGACCAACTCAGTAGAGTTAAAGGTGAAGTTTGTAGTAAAAGAGTGGCAGTTTTCTGATGGTTCGCATAGCTTGAACAGCCTCCGTTCTAATTCTCAGCGATCACTTATTGGATCATCAAGTCTTCTGTCAAAAACTGGAAGGAAACTTAAGATAACTGTTGTAGAAGCAAAGGATCTCGCTGCAAAAGACAAATCTGAAAAAATTAACCCATACATTAAATTGCTATATGGAAAGGTTGTCAAGAAAACAAAGGTTGCTCTTACTACTACTAGTACTACTACAAATCCTGTCTGGAATCAATCATTTGAATTTGATGAGAATGATGGTGATGAATACCTAAATGTAAAATGCTTTAGTGAAGAAATTTTTGGAGATGAAAATATTGGTAGTGCAAATGTAAATTTGGAAGGACTGGGGGATGGGTCAATCAAGGTTGAATGGATCCCTCTTGAAGGAGTGAGTTCGGGTGAATTGAAGCTTAAAATTGAAGTAGTTAAGGTGGAGGACCAAGAAGGATCAAGGGGTTCAACTAATGGTTGGATAGAACTTGTTGTGATTGAAGCGAGGGATCTTATTGCTGCTGATCTTCGAGGGACAAGTGATCCTTATGTGAGGGTAAACTACGGAAACTCGAAGAAAAGGACAAAGGTTATACACAAAACACTCAACCCTCGTTGGAACCAGACATTAGAGTTCCTTGACGATGGCAGTCCCTTGATACTGCATGTTAAGGACCACAATGCTTTACTACCCGAATCAAGTATAGGCGAAGGTGTTGTAGAATATCAAAGGTTGCCTCCAAACCAGATGTCTGACAAGTGGATACCTCTGCAAGGGGTGAAAAGTGGTGAGATCCACATCCAAATTACAAGAAAAGTTCCAGAAATGCAAACAAGACATACTCTAGACTCTCAACCCTCTTCGTTAAGTAAATCACACCAAATTCCTACCCAGATGAGAGAGATGATGAAAAAGTTTCGATCATTAATAGAGGATGAAAATCTTGAAGGATTAACAACAACTTTGAGTGAGTTAGAAAGTCTAGAGGATACACAGGAAGGGTATATAACACAGTTGGAGACAGAGCAAATGCTTCTACTCAGCAAAATAAATGAACTGGGTCGGGAGATCATCAATTCTTCTTCCCGCGCTAGTAGTAGTCCTTCTCAAAGTGGAATTTGA >Glyma08g04640.2 sequence type=CDS gene model=Glyma08g04640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTAGTAGTAAGAAAAGGTTCATTCCTATTAATCTGGAAGATGCTGCAGTGGACTTGTTAAACCATGTGGTGAAGTTGAAGGAGAAGGGATGGATTCCACTCTTCATTCCACTCATTTTGATTGCTTGGGCTATTCACAGATGGCTCTTCTCTTTCTCCAATTGGCTTCCCCTTGTACTTGCTCTATGGGCATCTATGCAATATGGAAATTATCAGCGCAAACTACTTGAGGAAGAGTTGAATAAGAAATGGAAACGGATCCTACTCAACACCTCGCCCATGACACCATTAGAACACTGTGAGTGGTTGAATCTGCTATTGACACAAATTTGGTCCAACTATTTTAACCCAAAGTTCTCAAGAAGGTTAAAAGCCATAGTTGAGAAACGGTTAAAGCTCCGGAAACCAAGATTTATAGAAAAGGTTGAGGTCCAAGAGTTTTCACTTGGATCATGCCCTCCAAGTTTGGGTCTTCAAGGGATGCGATGGTCAACCTCTGGTGGTCAGCGAGTCCTCAAAACGAGTTTCGATTGGGACACGAGTGAAATGAGCATTTTGATGCTTGCTAAGCTTTCCGTTGGAACAGCCAGAATTGTGATTAACAGTCTTCATATTAAGGGTGATCTTCTGGTGACACCAATTCTAGATGGAAAAGCACTTTTGTATTCCTTTCTATCAATACCTGAGGTGAAAATAGGAATTGCCTTTGGAAGTGGAGCAAGCCAATCAGCCACTGAGTTTCCTGGTGTTTCTTCATGGCTGAATAAACTTTTTACTGATACCTTAGCTAAAACCATGGTGGAACCTCGCCGTCGTTGTTTCAGTTTGCCTGTGGTTGATTTGAGGAAAACTGCTGTTGGAGGCATTATATATGTGTCAGTGATTTCAGCAAACAAACTTTCTAGGAGTTGCTTCAAGAGTAGCCCATCTTTGAGGCAACAAAATAGCACAATCAATGGATATTCAGAAAACAACCTGGATGACAATGACCTACAGACATTTGTAGAGGTAGAAGTGGAGGAATTGACAAGGAGGACGGGTCTGAGCCATGGTTCAAATCCAATGTGGGATACAACATTTAATATGGTTTTACATGATAATACAGGAATTGTTCGCTTCAATCTTTATGAGTGTCCCTCAAGTGGTGTTAAGTGTGACCACCTAGCAAGTTGTGAAATCAAGATGAGGCATGTTGAAGATGATTCAACAATAATGTGGGCAATAGGACCTGATTCTAGTGCAATAGCAAAGCATGCAAAGTTTTGCGGAGATGAAGTTGAAATGGTTGTCCCATTTGAGGGGACCAACTCAGTAGAGTTAAAGGTGAAGTTTGTAGTAAAAGAGTGGCAGTTTTCTGATGGTTCGCATAGCTTGAACAGCCTCCGTTCTAATTCTCAGCGATCACTTATTGGATCATCAAGTCTTCTGTCAAAAACTGGAAGGAAACTTAAGATAACTGTTGTAGAAGCAAAGGATCTCGCTGCAAAAGACAAATCTGAAAAAATTAACCCATACATTAAATTGCTATATGGAAAGGTTGTCAAGAAAACAAAGGTTGCTCTTACTACTACTAGTACTACTACAAATCCTGTCTGGAATCAATCATTTGAATTTGATGAGAATGATGGTGATGAATACCTAAATGTAAAATGCTTTAGTGAAGAAATTTTTGGAGATGAAAATATTGGTAGTGCAAATGTAAATTTGGAAGGACTGGGGGATGGGTCAATCAAGGTTGAATGGATCCCTCTTGAAGGAGTGAGTTCGGGTGAATTGAAGCTTAAAATTGAAGTAGTTAAGGTGGAGGACCAAGAAGGATCAAGGGTATGCTTCTTCAACAGGAAATTAGTAATTCTTTTAAATAAATTATAA
>Glyma08g04640.1 sequence type=predicted peptide gene model=Glyma08g04640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSSKKRFIPINLEDAAVDLLNHVVKLKEKGWIPLFIPLILIAWAIHRWLFSFSNWLPLVLALWASMQYGNYQRKLLEEELNKKWKRILLNTSPMTPLEHCEWLNLLLTQIWSNYFNPKFSRRLKAIVEKRLKLRKPRFIEKVEVQEFSLGSCPPSLGLQGMRWSTSGGQRVLKTSFDWDTSEMSILMLAKLSVGTARIVINSLHIKGDLLVTPILDGKALLYSFLSIPEVKIGIAFGSGASQSATEFPGVSSWLNKLFTDTLAKTMVEPRRRCFSLPVVDLRKTAVGGIIYVSVISANKLSRSCFKSSPSLRQQNSTINGYSENNLDDNDLQTFVEVEVEELTRRTGLSHGSNPMWDTTFNMVLHDNTGIVRFNLYECPSSGVKCDHLASCEIKMRHVEDDSTIMWAIGPDSSAIAKHAKFCGDEVEMVVPFEGTNSVELKVKFVVKEWQFSDGSHSLNSLRSNSQRSLIGSSSLLSKTGRKLKITVVEAKDLAAKDKSEKINPYIKLLYGKVVKKTKVALTTTSTTTNPVWNQSFEFDENDGDEYLNVKCFSEEIFGDENIGSANVNLEGLGDGSIKVEWIPLEGVSSGELKLKIEVVKVEDQEGSRGSTNGWIELVVIEARDLIAADLRGTSDPYVRVNYGNSKKRTKVIHKTLNPRWNQTLEFLDDGSPLILHVKDHNALLPESSIGEGVVEYQRLPPNQMSDKWIPLQGVKSGEIHIQITRKVPEMQTRHTLDSQPSSLSKSHQIPTQMREMMKKFRSLIEDENLEGLTTTLSELESLEDTQEGYITQLETEQMLLLSKINELGREIINSSSRASSSPSQSGI* >Glyma08g04640.2 sequence type=predicted peptide gene model=Glyma08g04640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSSKKRFIPINLEDAAVDLLNHVVKLKEKGWIPLFIPLILIAWAIHRWLFSFSNWLPLVLALWASMQYGNYQRKLLEEELNKKWKRILLNTSPMTPLEHCEWLNLLLTQIWSNYFNPKFSRRLKAIVEKRLKLRKPRFIEKVEVQEFSLGSCPPSLGLQGMRWSTSGGQRVLKTSFDWDTSEMSILMLAKLSVGTARIVINSLHIKGDLLVTPILDGKALLYSFLSIPEVKIGIAFGSGASQSATEFPGVSSWLNKLFTDTLAKTMVEPRRRCFSLPVVDLRKTAVGGIIYVSVISANKLSRSCFKSSPSLRQQNSTINGYSENNLDDNDLQTFVEVEVEELTRRTGLSHGSNPMWDTTFNMVLHDNTGIVRFNLYECPSSGVKCDHLASCEIKMRHVEDDSTIMWAIGPDSSAIAKHAKFCGDEVEMVVPFEGTNSVELKVKFVVKEWQFSDGSHSLNSLRSNSQRSLIGSSSLLSKTGRKLKITVVEAKDLAAKDKSEKINPYIKLLYGKVVKKTKVALTTTSTTTNPVWNQSFEFDENDGDEYLNVKCFSEEIFGDENIGSANVNLEGLGDGSIKVEWIPLEGVSSGELKLKIEVVKVEDQEGSRVCFFNRKLVILLNKL*
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