Glyma08g04620 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g04620

Feature Type:	gene_model
Chromosome:	Gm08
Start:	3292737
stop:	3296203
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g04620

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G73840	AT	Annotation by Michelle Graham. TAIR10: hydroxyproline-rich glycoprotein family protein \| chr1:27763937-27766328 REVERSE LENGTH=388	SoyBase	E_val: 1.00E-84	ISS
GO:0000398	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome	SoyBase	N/A	ISS
GO:0006396	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA processing	SoyBase	N/A	ISS
GO:0006470	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein dephosphorylation	SoyBase	N/A	ISS
GO:0030422	GO-bp	Annotation by Michelle Graham. GO Biological Process: production of siRNA involved in RNA interference	SoyBase	N/A	ISS
GO:0035194	GO-bp	Annotation by Michelle Graham. GO Biological Process: posttranscriptional gene silencing by RNA	SoyBase	N/A	ISS
GO:0035196	GO-bp	Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR23139	Panther	RNA-BINDING PROTEIN	JGI		ISS
PTHR23139:SF13	Panther	CLEAVAGE STIMULATION FACTOR 64	JGI		ISS
UniRef100_I1KQ57	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KQ57_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_O81698	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Proline-rich protein n=1 Tax=Glycine max RepID=O81698_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g04620

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g04620

Paralog	Evidence	Comments
Glyma05g35080	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g04620 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g041600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g04620

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g04620

Limit To All Plant Sequences

>Glyma08g04620.2   sequence type=transcript   gene model=Glyma08g04620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTGCATTGAATCTCCTTCATAATCATAGAACGAACAACATCCGTTTCTGGCTTTGCGGGTTGAGCAATGGCCGGAAAACAGGTCGGCGAGGGTTTACCGGCGAACCTCGCTGGAATGTCAAAGAATCAGCTCTACGATATCATGTCTCAGATGAAGGTACTTACAATACTTCTTCTTTTTCACTCTTCACGAAGAACAACACGCTAACCATTTCGTTTGTTGTCCCTCAGAATCTGATCGAACAGAACCAGCAACAGGCCAGGCAGATCCTCATCCAAAATCCTATGTTAACCAAAGCGCTTTTCCAGGCACAAATTATGCTTGGAATGGTGCAAGCACCTCAAGTGGTTCCAAAAGTTCAGCCAATGGTTTCACAGAACAATCAGCAGCCAGTACAACCAACACAACAGCCAAATATTCAGCCTGCTCCATTATTGCCTGGGCATGGTGGTGCACAGGATCAAGCAGGTGTATCTCAAACCCAAATTCCTCTGAGGAAACACCAGAACCAACCTTCAGTGCCAGTTTCATCTGCTGTTCCTGCAGCGAGGCATCAATCTCAGCCCATGGCTGCACATTCCTTGCCAATGCCACAACATCCTAAAGGACATCCAACTCCCCAAATGGCTCTAGTGTCTCTTCCACAATCATCACAACTTCCAAACATACCTCCACCTTCTCTTCAATCATCATCACAGCCTCTTCATCCAACTCAAATGGCAACTGCTTCCAGTCAGTTACAGCAACCAATGCAGACATCGGGGTTTCCACCTCTGCAACCACCGCTGCCACCGCAGATCAGACCAACTGCATTGCCAACCTTCCATCCCCAGTATCCCCCACAAATGGGTGCAAACATGGGTTTCCAACATGCTGGTGCTTCTCACAATCTTCCGCAATCGATGTTTCATCCTGGTACAAAACCTTCTGCTAGTGTTGGGTCCACATTCCCACAGGGGCAGACACCACTTCCAGGTCAACCATCATCTCAGCCACCTTATCAGGTTGGGAATATGCCTTTAGGGCCTGATTTTGGCAACCAAGCTGGAAATGCTATGCAAGTAGACAGAGGGTCTTCTTGGATGCTTGGTCCCTCAGAAAACCTAGCACATCTATCTGGTCCTCCTGGACCACCATCTGTAGTTTCTGGTCAGATGGGTGCTGCTGCTAAGCAGCCTCTTCGGCCTCCTGGGTTGACACCGGAGATGGAGAAGGCACTGCTTCAGCAGGTCATGAGCCTCACACCAGAGCAGATAAATCTCCTGCCTCCAGAACAAAGAAATCAAGTGCTGCAGCTACAACAGATGTTGCGTCAATGATGTAATACGCATACACACCATGAAAGTTAGGCAATCTTTAATCCTTCCAGTTTGGCAGAGGTTATTATGTCGTTTTTTTTTTATCGGCAAATATTAGTTTGTTAGTTTTGTAGGAATATGGTGGTAAGAATTTGAACCTGCAACCTCTCCCTCCCCCCTTAAGCCCCTTTTTAACCATTAAGCCAACCTTATATCTCCTAAAGGTTATTATGTCGTATATATTCAAACTGGTTGGCTGCCAAGTTTTGTAGAAATTAAATTAATACAAATTCATGTAACAAATTATAGAGCATATTATTCGTTTCTTCTGGAATTTGGCACGAGTGTATCTTTTCCGTTAGTTTTGTACGATGAAAGAGTAAATTGAGTTATAGTTCATATATGAT

Coding sequences of Glyma08g04620

Limit To All Plant Sequences

>Glyma08g04620.1   sequence type=CDS   gene model=Glyma08g04620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGGAAAACAGGTCGGCGAGGGTTTACCGGCGAACCTCGCTGGAATGTCAAAGAATCAGCTCTACGATATCATGTCTCAGATGAAGAATCTGATCGAACAGAACCAGCAACAGGCCAGGCAGATCCTCATCCAAAATCCTATGTTAACCAAAGCGCTTTTCCAGGCACAAATTATGCTTGGAATGGTGCAAGCACCTCAAGTGGTTCCAAAAGTTCAGCCAATGGTTTCACAGAACAATCAGCAGCCAGTACAACCAACACAACAGCCAAATATTCAGCCTGCTCCATTATTGCCTGGGCATGGTGGTGCACAGGATCAAGCAGGTGTATCTCAAACCCAAATTCCTCTGAGGAAACACCAGAACCAACCTTCAGTGCCAGTTTCATCTGCTGTTCCTGCAGCGAGGCATCAATCTCAGCCCATGGCTGCACATTCCTTGCCAATGCCACAACATCCTAAAGGACATCCAACTCCCCAAATGGCTCTAGTGTCTCTTCCACAATCATCACAACTTCCAAACATACCTCCACCTTCTCTTCAATCATCATCACAGCCTCTTCATCCAACTCAAATGGCAACTGCTTCCAGTCAGTTACAGCAACCAATGCAGACATCGGGGTTTCCACCTCTGCAACCACCGCTGCCACCGCAGATCAGACCAACTGCATTGCCAACCTTCCATCCCCAGTATCCCCCACAAATGGGTGCAAACATGGGTTTCCAACATGCTGGTGCTTCTCACAATCTTCCGCAATCGATGTTTCATCCTGGTACAAAACCTTCTGCTAGTGTTGGGTCCACATTCCCACAGGGGCAGACACCACTTCCAGGTCAACCATCATCTCAGCCACCTTATCAGGTTGGGAATATGCCTTTAGGGCCTGATTTTGGCAACCAAGCTGGAAATGCTATGCAAGTAGACAGAGGGTCTTCTTGGATGCTTGGTCCCTCAGAAAACCTAGCACATCTATCTGGTCCTCCTGGACCACCATCTGTAGTTTCTGGTCAGATGGGTGCTGCTGCTAAGCAGCCTCTTCGGCCTCCTGGGTTGACACCGGAGATGGAGAAGGCACTGCTTCAGCAGGTCATGAGCCTCACACCAGAGCAGATAAATCTCCTGCCTCCAGAACAAAGAAATCAAGTGCTGCAGCTACAACAGATGTTGCGTCAATGA

>Glyma08g04620.2   sequence type=CDS   gene model=Glyma08g04620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTAACCAAAGCGCTTTTCCAGGCACAAATTATGCTTGGAATGGTGCAAGCACCTCAAGTGGTTCCAAAAGTTCAGCCAATGGTTTCACAGAACAATCAGCAGCCAGTACAACCAACACAACAGCCAAATATTCAGCCTGCTCCATTATTGCCTGGGCATGGTGGTGCACAGGATCAAGCAGGTGTATCTCAAACCCAAATTCCTCTGAGGAAACACCAGAACCAACCTTCAGTGCCAGTTTCATCTGCTGTTCCTGCAGCGAGGCATCAATCTCAGCCCATGGCTGCACATTCCTTGCCAATGCCACAACATCCTAAAGGACATCCAACTCCCCAAATGGCTCTAGTGTCTCTTCCACAATCATCACAACTTCCAAACATACCTCCACCTTCTCTTCAATCATCATCACAGCCTCTTCATCCAACTCAAATGGCAACTGCTTCCAGTCAGTTACAGCAACCAATGCAGACATCGGGGTTTCCACCTCTGCAACCACCGCTGCCACCGCAGATCAGACCAACTGCATTGCCAACCTTCCATCCCCAGTATCCCCCACAAATGGGTGCAAACATGGGTTTCCAACATGCTGGTGCTTCTCACAATCTTCCGCAATCGATGTTTCATCCTGGTACAAAACCTTCTGCTAGTGTTGGGTCCACATTCCCACAGGGGCAGACACCACTTCCAGGTCAACCATCATCTCAGCCACCTTATCAGGTTGGGAATATGCCTTTAGGGCCTGATTTTGGCAACCAAGCTGGAAATGCTATGCAAGTAGACAGAGGGTCTTCTTGGATGCTTGGTCCCTCAGAAAACCTAGCACATCTATCTGGTCCTCCTGGACCACCATCTGTAGTTTCTGGTCAGATGGGTGCTGCTGCTAAGCAGCCTCTTCGGCCTCCTGGGTTGACACCGGAGATGGAGAAGGCACTGCTTCAGCAGGTCATGAGCCTCACACCAGAGCAGATAAATCTCCTGCCTCCAGAACAAAGAAATCAAGTGCTGCAGCTACAACAGATGTTGCGTCAATGA

Predicted protein sequences of Glyma08g04620

Limit To All Plant Sequences

>Glyma08g04620.1   sequence type=predicted peptide   gene model=Glyma08g04620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGKQVGEGLPANLAGMSKNQLYDIMSQMKNLIEQNQQQARQILIQNPMLTKALFQAQIMLGMVQAPQVVPKVQPMVSQNNQQPVQPTQQPNIQPAPLLPGHGGAQDQAGVSQTQIPLRKHQNQPSVPVSSAVPAARHQSQPMAAHSLPMPQHPKGHPTPQMALVSLPQSSQLPNIPPPSLQSSSQPLHPTQMATASSQLQQPMQTSGFPPLQPPLPPQIRPTALPTFHPQYPPQMGANMGFQHAGASHNLPQSMFHPGTKPSASVGSTFPQGQTPLPGQPSSQPPYQVGNMPLGPDFGNQAGNAMQVDRGSSWMLGPSENLAHLSGPPGPPSVVSGQMGAAAKQPLRPPGLTPEMEKALLQQVMSLTPEQINLLPPEQRNQVLQLQQMLRQ*

>Glyma08g04620.2   sequence type=predicted peptide   gene model=Glyma08g04620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLTKALFQAQIMLGMVQAPQVVPKVQPMVSQNNQQPVQPTQQPNIQPAPLLPGHGGAQDQAGVSQTQIPLRKHQNQPSVPVSSAVPAARHQSQPMAAHSLPMPQHPKGHPTPQMALVSLPQSSQLPNIPPPSLQSSSQPLHPTQMATASSQLQQPMQTSGFPPLQPPLPPQIRPTALPTFHPQYPPQMGANMGFQHAGASHNLPQSMFHPGTKPSASVGSTFPQGQTPLPGQPSSQPPYQVGNMPLGPDFGNQAGNAMQVDRGSSWMLGPSENLAHLSGPPGPPSVVSGQMGAAAKQPLRPPGLTPEMEKALLQQVMSLTPEQINLLPPEQRNQVLQLQQMLRQ*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain