Glyma08g04610 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g04610

Feature Type:	gene_model
Chromosome:	Gm08
Start:	3286556
stop:	3290062
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g04610

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G18400	AT	Annotation by Michelle Graham. TAIR10: NAC domain containing protein 58 \| chr3:6318745-6320593 REVERSE LENGTH=314	SoyBase	E_val: 7.00E-111	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0007275	GO-bp	Annotation by Michelle Graham. GO Biological Process: multicellular organismal development	SoyBase	N/A	ISS
GO:0010089	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylem development	SoyBase	N/A	ISS
GO:0044036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF02365	PFAM	No apical meristem (NAM) protein	JGI		ISS
UniRef100_G7KN39	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: NAC domain protein n=1 Tax=Medicago truncatula RepID=G7KN39_MEDTR	SoyBase	E_val: 2.00E-148	ISS
UniRef100_UPI00023389E3	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023389E3 related cluster n=1 Tax=unknown RepID=UPI00023389E3	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g04610

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g04610

Paralog	Evidence	Comments
Glyma05g35090	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g04610 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g041500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g04610

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g04610

Limit To All Plant Sequences

>Glyma08g04610.1   sequence type=CDS   gene model=Glyma08g04610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAAAAGCTACCTCCTGGGTTCAAGTTCCACCCCACAGACGAAGAACTCATCACATATTATTTATTAAGGAAAGTGTCCGATGTTGGCTTCACATCCAAAGCTGTAGCAGTTGTTGATCTCAATAAATCTGAACCTTGGGACCTCCCAGGTAAGGCATCGATGGGCGAGAAGGAATGGTATTTCTTCAGCTTGAAAGATCGGAAATATCCAACTGGGCTTCGAACCAACCGAGCCACTGAATCAGGGTATTGGAAAACCACAGGAAAAGATAAGGAAATATTTGGTGGTGGAGTTTTGATAGGGATGAAGAAAACCTTGGTCTTTTATATGGGCAGAGCTCCGAGGGGTGAGAAAAGTAACTGGGTTATGCACGAATATAGGCTTGCAAACAAACAACCCTATAGATCTTCAAAGGAAGAAAGGGTGATTTGCAGAGTCTTCCAAAAGAGCTCAGCACCCAAGAAACCACAGCAGACATCCTCTTCCCAACCATCTCAAGAGTCTCCTACCTCAATGGTCAACGAATTTGGTGATGTTGACCTACCAAATCTAAATAGCATTGCAAATTCATCCAGTAGCTTCACCAATAATATTGCATACAATATTAATGGTGATCCTAGCAATGCTGTTAACACCAATATGAACTTGACCATGAATTGGCCTTCTGGATTTCTGAATCCAAACCTTTCTGTGAATTCATTGCTTCTCAAGGCATCACAACTTAGAAATACTTATCAACAAAGAGAAGCTGCGACCAGTAGTGATCATCACTTTGCAACATATGTTCCTCAAGGATTTTCTCACAATAATACTATTGGAACTGAACATCACCTCATGACTCCAAATCTCAGTGCTACTTCTTCTTCTTCCAAAGCTTTAGAGTATTCTTGTGTGCCGCAGCAGGAGCAACCATTTAATATGGACTCCATTTGGTGA

Predicted protein sequences of Glyma08g04610

Limit To All Plant Sequences

>Glyma08g04610.1   sequence type=predicted peptide   gene model=Glyma08g04610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEKLPPGFKFHPTDEELITYYLLRKVSDVGFTSKAVAVVDLNKSEPWDLPGKASMGEKEWYFFSLKDRKYPTGLRTNRATESGYWKTTGKDKEIFGGGVLIGMKKTLVFYMGRAPRGEKSNWVMHEYRLANKQPYRSSKEERVICRVFQKSSAPKKPQQTSSSQPSQESPTSMVNEFGDVDLPNLNSIANSSSSFTNNIAYNINGDPSNAVNTNMNLTMNWPSGFLNPNLSVNSLLLKASQLRNTYQQREAATSSDHHFATYVPQGFSHNNTIGTEHHLMTPNLSATSSSSKALEYSCVPQQEQPFNMDSIW*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain