Glyma08g04600 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g04600

Feature Type:	gene_model
Chromosome:	Gm08
Start:	3277270
stop:	3280723
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g04600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G73850	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1666) \| chr1:27767375-27770386 FORWARD LENGTH=635	SoyBase	E_val: 1.00E-134	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
PTHR10759	Panther	60S RIBOSOMAL PROTEIN L34	JGI		ISS
PTHR10759:SF1	Panther	60S RIBOSOMAL PROTEIN L34	JGI		ISS
PF07891	PFAM	Protein of unknown function (DUF1666)	JGI		ISS
UniRef100_Q9LTR6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Gb\|AAF36750.1 n=1 Tax=Arabidopsis thaliana RepID=Q9LTR6_ARATH	SoyBase	E_val: 8.00E-30	ISS
UniRef100_UPI0002338892	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338892 related cluster n=1 Tax=unknown RepID=UPI0002338892	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g04600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g04600

Paralog	Evidence	Comments
Glyma05g35105	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g04600 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g041400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g04600

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g04600

Limit To All Plant Sequences

>Glyma08g04600.2   sequence type=CDS   gene model=Glyma08g04600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGCTATGTCCCAAAGAAGAAGCACTTGTTAAACTCTTCTACAATGTCGTCTCAAGCCCTTTCCAGCTTCTCTTCCTCATTCTCTTCTCCTCTTCCGTTTTCCTTGTCACCTTCTTAACCTTCACAGGCAGATTCCCCTTAATCCAAAGGGATCAAGAGTATGAATATGTGTATACCGAGGATGAAGAAGAAGAGGAAGAAGAAGAAAATCAAGAAGGGTATTCTTGTGTTGATTCTAACGAGAGATTACAAGTCACTTGTGGCAAGGAGACTCATGTGTTTCTGCAGAATGATGAGGGGCATCAGAGGACTCATTCTTATTCGGAAGAATTCATAAGCCATGAGGAGAGCTTGAATGAAGAAGAGTCAGAAGAAAAGCATTATTCTGAAATGTTGTCTCTCCATAACTCACCACAAGTTTCTGACTTGGAAAATGAAGAGGTGGAAACGATTCAAGTAGACTTTCCAGAGAGAGATCCTGATTCTGTTCCAAATTCTGCCCAAGTTGAAAGAAGGACCACCTCTCCCATCAGCCTCAGCGCATACAAAAGAAACAAAAACCGTGACGACGATCATGTTAGCATTGAAATTATTAAAAACAAGAAAGTGCAAGAGACAAACCTTGCAAGGGATGAGAGATTCTTTGTTTTTGCTTCTACCCAATTGCAGAGTAAGAAGTTAATGATTGAAGAGAAGGATGATGAGTCCTCTAAATGGAAGAGCTCCATCATTGGCAGGGACTCTGATACTGAAGATGAGTTTTCTTGCTCATCAAGAAGTTGCCCCAAGTGGGAATCATACACATTGTTCCAAAAGTATGATGAAGAGATGGCAATCCTAGACAGAATTAGTGCACAGAAGCTTCATGAAACTGAGTCATTAAGGTCCATCCAAATGTCTCCAAGATCAATGTCTGAGCGTATTGTGTATAAGTTTCAAAATATGAATAAAAAGCCCGCTGAGGCTGGTCACAACCCATATCATGAACTAGAGGCTGCATATGTTGCACAAATTTGTTTAACATGGGAAGCCCTTAGTTGGAACTACAAAAACTTTCGTTCCAAACACGCCTCACACCAGGATCATGATACCGGTTGTTCTGCCACCGTTGTGCAGCAATTCCAGCAATTTCAGGTTCTGTTACAGAGATACATTGAGAATGAGCCTTATGAGAATGGCAGGAGACCTGAGATCTTTGCTAGAATGAGGCTTTTGGCGCCAAAGTTACTCCTAGTGCCAGAATATCAAGATTTAGAGGAGGATCAGAAGGATGGTGGTTTTCAATGCAAAATATCATCTGCTTCATTTCTAAAGATAATGGAGGACGGGATAAAGACATTCATGAATTTTCTGAAGAATGATAAAGAGAAGCCTTGTCAGATCCTTGCAGCCTACTTTAGGAGAAAACAAAGAGGCACAGTTGATCCAACACTACTCCGACTAATGAAGAAGGTTAATCAAAAGAAGAGGGTGAAGGTTAAGGATCTTAACCATGCAGGGAAATGCTTGAGGAAGAGAAAGTTAAAGGTGGAAAAGGATATGGATATTTTGATGGCACTCATAGACCTAAAAGTGGTGTCGAGGGTTTTAAGAATGAATGACTTGAGTGAAGAGCAGTTGCACTGGTGTGAGGAGAAGATGAGCAAAGTGAGAATCATGGAAGGGAAACTTCAAAGAGATTATTCCACCCCACTTTTCTTCCCCTCACATTGA

Predicted protein sequences of Glyma08g04600

Limit To All Plant Sequences

>Glyma08g04600.2   sequence type=predicted peptide   gene model=Glyma08g04600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLLCPKEEALVKLFYNVVSSPFQLLFLILFSSSVFLVTFLTFTGRFPLIQRDQEYEYVYTEDEEEEEEEENQEGYSCVDSNERLQVTCGKETHVFLQNDEGHQRTHSYSEEFISHEESLNEEESEEKHYSEMLSLHNSPQVSDLENEEVETIQVDFPERDPDSVPNSAQVERRTTSPISLSAYKRNKNRDDDHVSIEIIKNKKVQETNLARDERFFVFASTQLQSKKLMIEEKDDESSKWKSSIIGRDSDTEDEFSCSSRSCPKWESYTLFQKYDEEMAILDRISAQKLHETESLRSIQMSPRSMSERIVYKFQNMNKKPAEAGHNPYHELEAAYVAQICLTWEALSWNYKNFRSKHASHQDHDTGCSATVVQQFQQFQVLLQRYIENEPYENGRRPEIFARMRLLAPKLLLVPEYQDLEEDQKDGGFQCKISSASFLKIMEDGIKTFMNFLKNDKEKPCQILAAYFRRKQRGTVDPTLLRLMKKVNQKKRVKVKDLNHAGKCLRKRKLKVEKDMDILMALIDLKVVSRVLRMNDLSEEQLHWCEEKMSKVRIMEGKLQRDYSTPLFFPSH*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain