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Report for Sequence Feature Glyma08g04570

Feature Type:gene_model
Chromosome:Gm08
Start:3250126
stop:3252228
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g04570
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G25440AT Annotation by Michelle Graham. TAIR10: B-box type zinc finger protein with CCT domain | chr1:8933939-8935284 REVERSE LENGTH=417 SoyBaseE_val: 3.00E-82ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
KOG1601 KOG GATA-4/5/6 transcription factors JGI ISS
PF00643PFAM B-box zinc finger JGI ISS
PF06203PFAM CCT motif JGI ISS
UniRef100_D0EP06UniRef Annotation by Michelle Graham. Most informative UniRef hit: CONSTANS-like zinc finger protein n=1 Tax=Glycine max RepID=D0EP06_SOYBN SoyBaseE_val: 0ISS
UniRef100_I1KQ52UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KQ52_SOYBN SoyBaseE_val: 0ISS

Proteins Associated with Glyma08g04570
LocusGene SymbolProtein Name
COL6b Constans-like 6b

Expression Patterns of Glyma08g04570
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g04570 not represented in the dataset
Glyma08g04570 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g04570
ParalogEvidenceComments
Glyma05g35151 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g04570 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g041100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g04570
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g04570
>Glyma08g04570.1   sequence type=CDS   gene model=Glyma08g04570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAGACATGAAAGACGCAGGTGCCCTGGGAGGCAAGACAGCACGAGCCTGCGATAGCTGCGTAAGCAGAAGGGCAAGGTGGTTCTGTGCAGCAGATGATGCTTTCCTCTGCCATGCTTGCGACACTTTGGTTCATTCCGCGAACCAGTTAGCAAGCAGACACGAAAGGGTTCGGCTTCAAACTGCATCCTCTAAGGCAACCACAACCACTACGCACGCATGGCACAGTGGATTCACACGCAAGGCAAGAACCCCGCGTCACAACAACAGCAAGCACTTTGCGCTGCAACAGCGTCTCAAACACGAAGTTCTCTTCAACAACACCAGTGTTCTTCCCCTCGTGCCGGAGCTCGGAGGGGAAGAACAAGAACCGGTGGTTGTGGACAACGATGAAACGGAGGAACAGATGCTGTGTCGCGTGCCCGTGTTCGACCCTTTTGATGTGAGAACCGATGACTTGGATAGCTTTTCTGACATGGATTTTTCTGAATTTGCTGCTGATGTTGAAGGCCGGCTTGACAAAGAAGACGATGAAATAAGTGCGTATGTGGGAGGAGGAGAGGGAGTTCAAGGTGTATTGGCCAAGGTTAAGGGCGAAGAAGAAATTGATGGTGATGTAGCGTGTTATCTGGAGTCAGTTTTTGACATGATCAGTGATGATGCCTTTCATTGGAATAATATTGAGTCTGTGGTGTCAGATGCCCGGGAAGAGAAGGGGTGTGTGGTGCCATGTGATGGTGGGGTTAGTGAACAAGGAGGAATAAAGAGAGACATATTTTTGAGACTAAACTATGATGAGGTTATTACTGCTTGGTCTAGCCAAGGTTCTTCCCCATGGACAACTTCAAACCCACCTAAGTTCAACTCTGATTATGACTTCTCCTTGGGTTTGAGTGGTGTAGATGGAGAAGGAAGAAGCTTAAGGGGACACCTAGATGGTGGAAGAGAAGCAAGAGTGTCGAGGTATAGAGAGAAGAGAAGGACTCGTTTGTTTGCAAAGAAGATAAGATATGAAGTAAGGAAGTTGAACGCAGAGAAAAGGCCTAGAATGAAAGGTCGTTTTGTGAAGAGGACATGCTTTGTTGGAGCCAATGCTTTTCCTGCTTACCACTGA
Predicted protein sequences of Glyma08g04570
>Glyma08g04570.1   sequence type=predicted peptide   gene model=Glyma08g04570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRDMKDAGALGGKTARACDSCVSRRARWFCAADDAFLCHACDTLVHSANQLASRHERVRLQTASSKATTTTTHAWHSGFTRKARTPRHNNSKHFALQQRLKHEVLFNNTSVLPLVPELGGEEQEPVVVDNDETEEQMLCRVPVFDPFDVRTDDLDSFSDMDFSEFAADVEGRLDKEDDEISAYVGGGEGVQGVLAKVKGEEEIDGDVACYLESVFDMISDDAFHWNNIESVVSDAREEKGCVVPCDGGVSEQGGIKRDIFLRLNYDEVITAWSSQGSSPWTTSNPPKFNSDYDFSLGLSGVDGEGRSLRGHLDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTCFVGANAFPAYH*






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