Glyma08g04500 - SoyBase

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Report for Sequence Feature Glyma08g04500

Feature Type:	gene_model
Chromosome:	Gm08
Start:	3174662
stop:	3178014
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g04500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G18440	AT	Annotation by Michelle Graham. TAIR10: Peptidyl-tRNA hydrolase family protein \| chr1:6345994-6347686 FORWARD LENGTH=288	SoyBase	E_val: 3.00E-71	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0006783	GO-bp	Annotation by Michelle Graham. GO Biological Process: heme biosynthetic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0004045	GO-mf	Annotation by Michelle Graham. GO Molecular Function: aminoacyl-tRNA hydrolase activity	SoyBase	N/A	ISS
PTHR17224	Panther	PEPTIDYL-TRNA HYDROLASE	JGI		ISS
PF01195	PFAM	Peptidyl-tRNA hydrolase	JGI		ISS
UniRef100_G7L906	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Peptidyl-tRNA hydrolase n=1 Tax=Medicago truncatula RepID=G7L906_MEDTR	SoyBase	E_val: 5.00E-81	ISS
UniRef100_I1K5T0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K5T0_SOYBN	SoyBase	E_val: 1.00E-96	ISS

Expression Patterns of Glyma08g04500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g04500 not represented in the dataset	Glyma08g04500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g04500

Paralog	Evidence	Comments
Glyma05g35220	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g04500 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g040400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g04500

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g04500

Limit To All Plant Sequences

>Glyma08g04500.3   sequence type=transcript   gene model=Glyma08g04500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CATTCGTTCCCTTCCTCCCCAAGAATAAGATAACATAGCTTTCTTCCTGGATTCTTCGGTTTAGGGTTTGAAAATATGAACATTTCTGGTTGTTGGGTTTCATCAATGAAATTGCCCTTCCTCGGGTGGCGATTCTCTAGGCCTTACCTCTCTCTGTTCTTCTTCTTCTTCGTCTCTCATTATGACCATTCAAAATTGTTCTTCTTCGGCTTCCATATCAACGTCGGATTCGAAGGAGAAGAAGAAGGAAGCAGCTTCACCTTGGTTAATTGTTGGCCTCGGCAATCCAGGCAAAAAGTACGCTGCCACCCGCCACAATGTGGGTTTTGAGATGGTTGATACCATTGCTGAAGCTGAAGGGATATCTATGACCACTGTTTCCTTCAAAGCCTTATTTGGAAAAGGTTTTATAGGTGATGTACCAGTTATACTTGCAAAACCACAGACTTTTATGAATTTAAGTGGCGAATCTGTTGGGACCATAGTTTCATATTACAAGATTCCAGTGAAGCAAGTACTTGTGATCGTTGACGACTTGGATTTGCCTTTTGCTAAATTGCAGCTTCTACCAAAGGGTGGACATGGAGGTCACAATGGAATGAAGAGTGTTATTAATCACTTCAAAGGGAATACTGGTTTTCCCCGTTTAAGAATTGGCATTGGGCGACCTCCTGGGAAAATGGACCCTGTAGCTTTTGTTCTTCACACCTTCACTAAACAGAAAGGCAAGAGGTATGTATCTCTTTTTTTTTTTAAAGGTGTAAACTGACAAACTGGCCCTCAGCACATGGAAGTTCTAAAAGTTGATAAAAATGTCTTTCAGTTGAATTTTACATTACGAGATGGATTAGAAGCTGTGCGGATTCTTTTGCTTGAGGGATTTGATAAAAGTGCAACATTTGTTAATAGTGCCAAAAAGATAGAGCAAACAGGTTGAGGAATTTCTGACTTAAAAATATCCTTTTGGCAAGTACAAACAAACAGGATCGTATAGCAAGGAGATACAGCTTAGAGTAAACTCGTTCAAATCTCTGTTTTTAATTTGATAGGGCTATGTTTGAGCAAGTATTCATCAATTCTTTCAGAAAGCAGTTTCAGCACAATGAATTCGAACCTGGTGCCTGAAATCTTCAGACGTTTACATATTGTGGTGTTTGATCAATTTTGAGCACTTTCAGCGCCTTGAATTACATTATATAATGTCGTGGAATTATTAGGCAATTGTAGTTGTAGGTACCTTTCATAATGATCACATAAGATCATTTTCTCTGTTCTTGGCTGCCTGTGAGTTGATAGCTCACACGAGACTCAACAACGGTTTTTAATTCTTTATCACTATGTAGAAGTTCATCACTGTGTATTCATACAAGAGTTGCTCTGGCTTGATGTCATGAATCTGCCCATCACATTTCCTTTCCCCATTCTTTGGTTCAGCTAGGCTTCTTGTACACTAAATAATAGTTTTTGGCTGTTTGTTCAACGAACGAGCTGTATTTCTTAACCAAAGTTGTTGTGTATAATATACCTACTTATCTTTCTACAGAAT

>Glyma08g04500.4   sequence type=transcript   gene model=Glyma08g04500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CATTCGTTCCCTTCCTCCCCAAGAATAAGATAACATAGCTTTCTTCCTGGATTCTTCGGTTTAGGGTTTGAAAATATGAACATTTCTGGTTGTTGGGTTTCATCAATGAAATTGCCCTTCCTCGGGTGGCGATTCTCTAGGCCTTACCTCTCTCTGTTCTTCTTCTTCTTCGTCTCTCATTATGACCATTCAAAATTGTTCTTCTTCGGCTTCCATATCAACGTCGGATTCGAAGGAGAAGAAGAAGGAAGCAGCTTCACCTTGGTTAATTGTTGGCCTCGGCAATCCAGGCAAAAAGTACGCTGCCACCCGCCACAATGTGGGTTTTGAGATGGTTGATACCATTGCTGAAGCTGAAGGGATATCTATGACCACTGTTTCCTTCAAAGCCTTATTTGGAAAAGGTTTTATAGGTGATGTACCAGTTATACTTGCAAAACCACAGACTTTTATGAATTTAAGTGGCGAATCTGTTGGGACCATAGTTTCATATTACAAGATTCCAGTGAAGCAAGTACTTGTGATCGTTGACGACTTGGATTTGCCTTTTGCTAAATTGCAGCTTCTACCAAAGGGTGGACATGGAGGTCACAATGGAATGAAGAGTGTTATTAATCACTTCAAAGGGAATACTGGTTTTCCCCGTTTAAGAATTGGCATTGGGCGACCTCCTGGGAAAATGGACCCTGTAGCTTTTGTTCTTCACACCTTCACTAAACAGAAAGGCAAGAGTTGAATTTTACATTACGAGATGGATTAGAAGCTGTGCGGATTCTTTTGCTTGAGGGATTTGATAAAAGTGCAACATTTGTTAATAGTGCCAAAAAGATAGAGCAAACAGGTTGAGGAATTTCTGACTTAAAAATATCCTTTTGGCAAGTACAAACAAACAGGATCGTATAGCAAGGAGATACAGCTTAGAGTAAACTCGTTCAAATCTCTGTTTTTAATTTGATAGGGCTATGTTTGAGCAAGTATTCATCAATTCTTTCAGAAAGCAGTTTCAGCACAATGAATTCGAACCTGGTGCCTGAAATCTTCAGACGTTTACATATTGTGGTGTTTGATCAATTTTGAGCACTTTCAGCGCCTTGAATTACATTATATAATGTCGTGGAATTATTAGGCAATTGTAGTTGTAGGTACCTTTCATAATGATCACATAAGATCATTTTCTCTGTTCTTGGCTGCCTGTGAGTTGATAGCTCACACGAGACTCAACAACGGTTTTTAATTCTTTATCACTATGTAGAAGTTCATCACTGTGTATTCATACAAGAGTTGCTCTGGCTTGATGTCATGAATCTGCCCATCACATTTCCTTTCCCCATTCTTTGGTTCAGCTAGGCTTCTTGTACACTAAATAATAGTTTTTGGCTGTTTGTTCAACGAACGAGCTGTATTTCTTAACCAAAGTTGTTGTGTATAATATACCTACTTATCTTTCTACAGAAT

>Glyma08g04500.5   sequence type=transcript   gene model=Glyma08g04500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CATTCGTTCCCTTCCTCCCCAAGAATAAGATAACATAGCTTTCTTCCTGGATTCTTCGGTTTAGGGTTTGAAAATATGAACATTTCTGGTTGTTGGGTTTCATCAATGAAATTGCCCTTCCTCGGGTGGCGATTCTCTAGGCCTTACCTCTCTCTGTTCTTCTTCTTCTTCGTCTCTCATTATGACCATTCAAAATTGTTCTTCTTCGGCTTCCATATCAACGTCGGATTCGAAGGAGAAGAAGAAGGAAGCAGCTTCACCTTGGTTAATTGTTGGCCTCGGCAATCCAGGCAAAAAGTACGCTGCCACCCGCCACAATGTGGGTTTTGAGATGGTTGATACCATTGCTGAAGCTGAAGGGATATCTATGACCACTGTTTCCTTCAAAGCCTTATTTGGAAAAGGTTTTATAGGTGATGTACCAGTTATACTTGCAAAACCACAGACTTTTATGAATTTAAGTGGCGAATCTGTTGGGACCATAGTTTCATATTACAAGATTCCAGTGAAGCAAGTACTTGTGATCGTTGACGACTTGGATTTGCCTTTTGCTAAATTGCAGCTTCTACCAAAGGGTGGACATGGAGGTCACAATGGGTGGGTGTTGGGGGTGTACATAAGTTTTGGAGGAGGGTGGAAGGTTGTTGTATTCCAAGGGCAAGGCATGCCAGAAACTCATTATTTTTACTATTGTAATATAAACTGGGTGATAGTGATATTGGAATGAAGAGTGTTATTAATCACTTCAAAGGGAATACTGGTTTTCCCCGTTTAAGAATTGGCATTGGGCGACCTCCTGGGAAAATGGACCCTGTAGCTTTTGTTCTTCACACCTTCACTAAACAGAAAGGCAAGAGTTGAATTTTACATTACGAGATGGATTAGAAGCTGTGCGGATTCTTTTGCTTGAGGGATTTGATAAAAGTGCAACATTTGTTAATAGTGCCAAAAAGATAGAGCAAACAGGTTGAGGAATTTCTGACTTAAAAATATCCTTTTGGCAAGTACAAACAAACAGGATCGTATAGCAAGGAGATACAGCTTAGAGTAAACTCGTTCAAATCTCTGTTTTTAATTTGATAGGGCTATGTTTGAGCAAGTATTCATCAATTCTTTCAGAAAGCAGTTTCAGCACAATGAATTCGAACCTGGTGCCTGAAATCTTCAGACGTTTACATATTGTGGTGTTTGATCAATTTTGAGCACTTTCAGCGCCTTGAATTACATTATATAATGTCGTGGAATTATTAGGCAATTGTAGTTGTAGGTACCTTTCATAATGATCACATAAGATCATTTTCTCTGTTCTTGGCTGCCTGTGAGTTGATAGCTCACACGAGACTCAACAACGGTTTTTAATTCTTTATCACTATGTAGAAGTTCATCACTGTGTATTCATACAAGAGTTGCTCTGGCTTGATGTCATGAATCTGCCCATCACATTTCCTTTCCCCATTCTTTGGTTCAGCTAGGCTTCTTGTACACTAAATAATAGTTTTTGGCTGTTTGTTCAACGAACGAGCTGTATTTCTTAACCAAAGTTGTTGTGTATAATATACCTACTTATCTTTCTACAGAAT

Coding sequences of Glyma08g04500

Limit To All Plant Sequences

>Glyma08g04500.2   sequence type=CDS   gene model=Glyma08g04500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACATTTCTGGTTGTTGGGTTTCATCAATGAAATTGCCCTTCCTCGGGTGGCGATTCTCTAGGCCTTACCTCTCTCTGTTCTTCTTCTTCTTCGTCTCTCATTATGACCATTCAAAATTGTTCTTCTTCGGCTTCCATATCAACGTCGGATTCGAAGGAGAAGAAGAAGGAAGCAGCTTCACCTTGGTTAATTGTTGGCCTCGGCAATCCAGGCAAAAAGTGGGTTTTGAGATGGTTGATACCATTGCTGAAGCTGAAGGGATATCTATGACCACTGTTTCCTTCAAAGCCTTATTTGGAAAAGGTTTTATAGGTGATGTACCAGTTATACTTGCAAAACCACAGACTTTTATGAATTTAAGTGGCGAATCTGTTGGGACCATAGTTTCATATTACAAGATTCCAGTGAAGCAAGTACTTGTGATCGTTGACGACTTGGATTTGCCTTTTGCTAAATTGCAGCTTCTACCAAAGGGTGGACATGGAGGTCACAATGGAATGAAGAGTGTTATTAATCACTTCAAAGGGAATACTGGTTTTCCCCGTTTAAGAATTGGCATTGGGCGACCTCCTGGGAAAATGGACCCTGTAGCTTTTGTTCTTCACACCTTCACTAAACAGAAAGGCAAGAGTTGA

>Glyma08g04500.3   sequence type=CDS   gene model=Glyma08g04500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCATTCAAAATTGTTCTTCTTCGGCTTCCATATCAACGTCGGATTCGAAGGAGAAGAAGAAGGAAGCAGCTTCACCTTGGTTAATTGTTGGCCTCGGCAATCCAGGCAAAAAGTACGCTGCCACCCGCCACAATGTGGGTTTTGAGATGGTTGATACCATTGCTGAAGCTGAAGGGATATCTATGACCACTGTTTCCTTCAAAGCCTTATTTGGAAAAGGTTTTATAGGTGATGTACCAGTTATACTTGCAAAACCACAGACTTTTATGAATTTAAGTGGCGAATCTGTTGGGACCATAGTTTCATATTACAAGATTCCAGTGAAGCAAGTACTTGTGATCGTTGACGACTTGGATTTGCCTTTTGCTAAATTGCAGCTTCTACCAAAGGGTGGACATGGAGGTCACAATGGAATGAAGAGTGTTATTAATCACTTCAAAGGGAATACTGGTTTTCCCCGTTTAAGAATTGGCATTGGGCGACCTCCTGGGAAAATGGACCCTGTAGCTTTTGTTCTTCACACCTTCACTAAACAGAAAGGCAAGAGGTATGTATCTCTTTTTTTTTTTAAAGGTGTAAACTGA

>Glyma08g04500.4   sequence type=CDS   gene model=Glyma08g04500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCATTCAAAATTGTTCTTCTTCGGCTTCCATATCAACGTCGGATTCGAAGGAGAAGAAGAAGGAAGCAGCTTCACCTTGGTTAATTGTTGGCCTCGGCAATCCAGGCAAAAAGTACGCTGCCACCCGCCACAATGTGGGTTTTGAGATGGTTGATACCATTGCTGAAGCTGAAGGGATATCTATGACCACTGTTTCCTTCAAAGCCTTATTTGGAAAAGGTTTTATAGGTGATGTACCAGTTATACTTGCAAAACCACAGACTTTTATGAATTTAAGTGGCGAATCTGTTGGGACCATAGTTTCATATTACAAGATTCCAGTGAAGCAAGTACTTGTGATCGTTGACGACTTGGATTTGCCTTTTGCTAAATTGCAGCTTCTACCAAAGGGTGGACATGGAGGTCACAATGGAATGAAGAGTGTTATTAATCACTTCAAAGGGAATACTGGTTTTCCCCGTTTAAGAATTGGCATTGGGCGACCTCCTGGGAAAATGGACCCTGTAGCTTTTGTTCTTCACACCTTCACTAAACAGAAAGGCAAGAGTTGA

>Glyma08g04500.5   sequence type=CDS   gene model=Glyma08g04500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCATTCAAAATTGTTCTTCTTCGGCTTCCATATCAACGTCGGATTCGAAGGAGAAGAAGAAGGAAGCAGCTTCACCTTGGTTAATTGTTGGCCTCGGCAATCCAGGCAAAAAGTACGCTGCCACCCGCCACAATGTGGGTTTTGAGATGGTTGATACCATTGCTGAAGCTGAAGGGATATCTATGACCACTGTTTCCTTCAAAGCCTTATTTGGAAAAGGTTTTATAGGTGATGTACCAGTTATACTTGCAAAACCACAGACTTTTATGAATTTAAGTGGCGAATCTGTTGGGACCATAGTTTCATATTACAAGATTCCAGTGAAGCAAGTACTTGTGATCGTTGACGACTTGGATTTGCCTTTTGCTAAATTGCAGCTTCTACCAAAGGGTGGACATGGAGGTCACAATGGGTGGGTGTTGGGGGTGTACATAAGTTTTGGAGGAGGGTGGAAGGTTGTTGTATTCCAAGGGCAAGGCATGCCAGAAACTCATTATTTTTACTATTGTAATATAAACTGGGTGATAGTGATATTGGAATGA

Predicted protein sequences of Glyma08g04500

Limit To All Plant Sequences

>Glyma08g04500.2   sequence type=predicted peptide   gene model=Glyma08g04500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNISGCWVSSMKLPFLGWRFSRPYLSLFFFFFVSHYDHSKLFFFGFHINVGFEGEEEGSSFTLVNCWPRQSRQKVGFEMVDTIAEAEGISMTTVSFKALFGKGFIGDVPVILAKPQTFMNLSGESVGTIVSYYKIPVKQVLVIVDDLDLPFAKLQLLPKGGHGGHNGMKSVINHFKGNTGFPRLRIGIGRPPGKMDPVAFVLHTFTKQKGKS*

>Glyma08g04500.3   sequence type=predicted peptide   gene model=Glyma08g04500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTIQNCSSSASISTSDSKEKKKEAASPWLIVGLGNPGKKYAATRHNVGFEMVDTIAEAEGISMTTVSFKALFGKGFIGDVPVILAKPQTFMNLSGESVGTIVSYYKIPVKQVLVIVDDLDLPFAKLQLLPKGGHGGHNGMKSVINHFKGNTGFPRLRIGIGRPPGKMDPVAFVLHTFTKQKGKRYVSLFFFKGVN*

>Glyma08g04500.4   sequence type=predicted peptide   gene model=Glyma08g04500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTIQNCSSSASISTSDSKEKKKEAASPWLIVGLGNPGKKYAATRHNVGFEMVDTIAEAEGISMTTVSFKALFGKGFIGDVPVILAKPQTFMNLSGESVGTIVSYYKIPVKQVLVIVDDLDLPFAKLQLLPKGGHGGHNGMKSVINHFKGNTGFPRLRIGIGRPPGKMDPVAFVLHTFTKQKGKS*

>Glyma08g04500.5   sequence type=predicted peptide   gene model=Glyma08g04500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTIQNCSSSASISTSDSKEKKKEAASPWLIVGLGNPGKKYAATRHNVGFEMVDTIAEAEGISMTTVSFKALFGKGFIGDVPVILAKPQTFMNLSGESVGTIVSYYKIPVKQVLVIVDDLDLPFAKLQLLPKGGHGGHNGWVLGVYISFGGGWKVVVFQGQGMPETHYFYYCNINWVIVILE*

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