Glyma08g04460 - SoyBase

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Report for Sequence Feature Glyma08g04460

Feature Type:	gene_model
Chromosome:	Gm08
Start:	3149759
stop:	3155385
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g04460

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G13360	AT	Annotation by Michelle Graham. TAIR10: ATP-dependent caseinolytic (Clp) protease/crotonase family protein \| chr4:7775133-7777701 FORWARD LENGTH=421	SoyBase	E_val: 0	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
KOG1684	KOG	Enoyl-CoA hydratase	JGI		ISS
PTHR11941	Panther	ENOYL-COA HYDRATASE-RELATED	JGI		ISS
PTHR11941:SF19	Panther	3-HYDROXYACYL-COA DEHYDROGENASE	JGI		ISS
PF00378	PFAM	Enoyl-CoA hydratase/isomerase family	JGI		ISS
UniRef100_G7L901	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 3-hydroxyisobutyryl-CoA hydrolase-like protein n=1 Tax=Medicago truncatula RepID=G7L901_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KQ42	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KQ42_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g04460

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g04460 not represented in the dataset	Glyma08g04460 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g04460

Paralog	Evidence	Comments
Glyma05g35260	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g04460 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g040000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g04460

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g04460

Limit To All Plant Sequences

>Glyma08g04460.2   sequence type=transcript   gene model=Glyma08g04460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTAATTTGATTTTCGTCTTGTTGTTTTCACAGAAAAGGATGCTACTGGGTGCTGTCAGAGTTCAACATTTTCTGAGTTCACTCACTTTTTCTCGCTTTCAACCTTCCTTTTCTCTGCGAGCATTTTCCGCTATGGCCGAAGAATTTGTGAAGGGCTCTGTTCATCAAAACGGCGTCGCTGTCATAACCCTCGATCGCCCCAAAGCTCTCAACGCCATGAACCTAGATATGGATGTAAAGTATAAAAGTTATCTTGATGAATGGGAATCTGACCCAAGGGTCAAATGCGTACTGGTTGATAGCAGCTCGCCTCGAGCCTTTTGCGCTGGTATGGATATTAAAGGGGTTGTTGCTGAAATACAAAAGGACAAAAACACTCCTTTAGTGCAGAAGGTCTCATATTATTTGTTTTAACCTCAAGTGTATTAACATACATGCTTATCCAGTTGTACTGGTACTTCATTGGATATGTTGTTTGCATCTTTGTCAACATCATTATCTTCTTTCAATGCTACCCTACTGGTCTATAGTCTATAGTCCGTGTTTCATCAAATTAAGTTTTCTCTGTTCTCAATGACTTCTTACTCGGTAACCGAGATCTTAGTTTATCTGCAGGTGGTGATGTGAAGCAGATAACAATCAAAAACCATCTATCAGATATGATTGAGGTCTTCACTGCTGAGTATTCTTTGATATGCAAAATTTCTGATTACAAGAAGCCATATATAAGCTTCATGGATGGAATAACTATGGGTTTTGGAATTGGTTTATCTGGTCATGGCCGCTATCGCATCATAACAGAGAGAACTGTTCTTGCGATGCCAGAAAATGGAATTGGTTTGTTCCCAGATGTAGGTTTTGCTTATATAGCGGCTCAAAGTCCAGGGGAAGGATCCGTTGGTGCTTATCTTGGATTGACTGGAAAGAGGATTTCTACTCCCTCAGATGCAATATATGCTGGCCTTGGAACACATTATGTGCCATCTGGAAAGTTAGGTTCATTCAAGGATGCCCTCTTGGCCACAAACTTTTCTCAGGATCCACATCAGGACATCAAAGTACTTTTAGCAAGATATGAGTCCAACCCTGAGTCCGAGGCACAGTTGAAATTGCTTTTACCTCAGCTAGTTTCTACATTTGGAGGAAATAAATCAGTCACTGAAATTATTGAGGAGCTAAAAAAACACCAGTCAAGCACTGACCCTAATGTCGTGGAGTGGGCTAATGAAGCTCTCCAAGGCCTCAGAAAAGGTGCTCCTTTTTCCCTTTTCTTGACCAACAAGTACTTCTCTTCGGTTGCCTCTGCAGTGGGGAATAATGACGGTGGACTATCCACGCTTAGTGGCGTAATGGAAACTGAGTATCGTATTGCCTTGAGGTCTTCACTACGGCATGATTTTTCAGAAGGTGTCCGAGCAGTGCTGGTGGACAAGGATCAGAACCCAAAATGGAAACCATCAAGCTTGGAGGAAATTGATCCGAGTGAAGTGGAAGCCGTCTTTAAACCTTTAGGACCGGAAGTTGGGGAGTTGAGAGTGTAATTTTAGATGGAAAATGTGCTTTTCTCATTTCTTCAAATGCATTACAGAATTGTAAGCACTGCATAAAATAAATAGATGGTGTTTTCATTAGGTCTGGCATCCAGTCCAGGTCCAGCGTGTTGCTAGCACTGTTCACCATATAATAACATGAGGTCCACGTTTTTGGAAAGGTCAAATGATCTTGTTGCTTCCATTATACCCATTTGGAAGAAATGAAGGTCTCTAGTTTCCTTAATCAACTTCTCTGAATGTACTCAGTGAATTTAATGGATCCGTTTGTTCAAGTTTATTTAAAAAATATTTCTTTTAATAAAATAACCAGTTTTTTT

>Glyma08g04460.3   sequence type=transcript   gene model=Glyma08g04460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCAACTTAAAATTATACATAAATGATCAAATTAAAAGATAATAAGGTGAAAACATCAAACTTTAGAGTCTGAGAGTCAAGAGCCACAAAATTTGTGTTTTATCACGAATTCTTAAGTTTTCAATTCCTAGATAATGCTGCAAGTTCGGACAAAAAAGGAGACAAATGTGCTTGTAATGAAAAGAGTCGCTGAAAAGGAACCAAAAAAGGGAAATAGTTGGCCAAATGGTGCTGTTTTGGGGACTTTTTAGAGCTTGTTTCTCTACTTAAAGCAGATTTTCTAAATCAGCCTTGGAATCACAATTTTGAGCGAGTTCATCCAATCCTGGCTGAGTTGACACTAGTTTGGATTGGTCTAAGTTTCCTTGGGAGTTATTGCATTTTTGGACCTTAATCCTAAACAAGTTAATTTGTGAGTTTGACAACAATGCTGTCAGCAATTATGCATTTTGCTGCATCTTGCATTTTTGCATGACCTGTTAATGTACTACATAAAAATTACGTACTTGTTATATTTCATGTTTTAGGTCTTCACTGCTGAGTATTCTTTGATATGCAAAATTTCTGATTACAAGAAGCCATATATAAGCTTCATGGATGGAATAACTATGGGTTTTGGAATTGGTTTATCTGGTCATGGCCGCTATCGCATCATAACAGAGAGAACTGTTCTTGCGATGCCAGAAAATGGAATTGGTTTGTTCCCAGATGTAGGTTTTGCTTATATAGCGGCTCAAAGTCCAGGGGAAGGATCCGTTGGTGCTTATCTTGGATTGACTGGAAAGAGGATTTCTACTCCCTCAGATGCAATATATGCTGGCCTTGGAACACATTATGTGCCATCTGGAAAGTTAGGTTCATTCAAGGATGCCCTCTTGGCCACAAACTTTTCTCAGGATCCACATCAGGACATCAAAGTACTTTTAGCAAGATATGAGTCCAACCCTGAGTCCGAGGCACAGTTGAAATTGCTTTTACCTCAGCTAGTTTCTACATTTGGAGGAAATAAATCAGTCACTGAAATTATTGAGGAGCTAAAAAAACACCAGTCAAGCACTGACCCTAATGTCGTGGAGTGGGCTAATGAAGCTCTCCAAGGCCTCAGAAAAGGTGCTCCTTTTTCCCTTTTCTTGACCAACAAGTACTTCTCTTCGGTTGCCTCTGCAGTGGGGAATAATGACGGTGGACTATCCACGCTTAGTGGCGTAATGGAAACTGAGTATCGTATTGCCTTGAGGTCTTCACTACGGCATGATTTTTCAGAAGGTGTCCGAGCAGTGCTGGTGGACAAGGATCAGAACCCAAAATGGAAACCATCAAGCTTGGAGGAAATTGATCCGAGTGAAGTGGAAGCCGTCTTTAAACCTTTAGGACCGGAAGTTGGGGAGTTGAGAGTGTAATTTTAGATGGAAAATGTGCTTTTCTCATTTCTTCAAATGCATTACAGAATTGTAAGCACTGCATAAAATAAATAGATGGTGTTTTCATTAGGTCTGGCATCCAGTCCAGGTCCAGCGTGTTGCTAGCACTGTTCACCATATAATAACATGAGGTCCACGTTTTTGGAAAGGTCAAATGATCTTGTTGCTTCCATTATACCCATTTGGAAGAAATGAAGGTCTCTAGTTTCCTTAATCAACTTCTCTGAATGTACTCAGTGAATTTAATGGATCCGTTTGTTCAAGTTTATTTAAAAAATATTTCTTTTAATAAAATAACCAGTTTTTTT

Coding sequences of Glyma08g04460

Limit To All Plant Sequences

>Glyma08g04460.1   sequence type=CDS   gene model=Glyma08g04460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTACTGGGTGCTGTCAGAGTTCAACATTTTCTGAGTTCACTCACTTTTTCTCGCTTTCAACCTTCCTTTTCTCTGCGAGCATTTTCCGCTATGGCCGAAGAATTTGTGAAGGGCTCTGTTCATCAAAACGGCGTCGCTGTCATAACCCTCGATCGCCCCAAAGCTCTCAACGCCATGAACCTAGATATGGATGTAAAGTATAAAAGTTATCTTGATGAATGGGAATCTGACCCAAGGGTCAAATGCGTACTGGTTGATAGCAGCTCGCCTCGAGCCTTTTGCGCTGGTATGGATATTAAAGGGGTTGTTGCTGAAATACAAAAGGACAAAAACACTCCTTTAGTGCAGAAGGTCTTCACTGCTGAGTATTCTTTGATATGCAAAATTTCTGATTACAAGAAGCCATATATAAGCTTCATGGATGGAATAACTATGGGTTTTGGAATTGGTTTATCTGGTCATGGCCGCTATCGCATCATAACAGAGAGAACTGTTCTTGCGATGCCAGAAAATGGAATTGGTTTGTTCCCAGATGTAGGTTTTGCTTATATAGCGGCTCAAAGTCCAGGGGAAGGATCCGTTGGTGCTTATCTTGGATTGACTGGAAAGAGGATTTCTACTCCCTCAGATGCAATATATGCTGGCCTTGGAACACATTATGTGCCATCTGGAAAGTTAGGTTCATTCAAGGATGCCCTCTTGGCCACAAACTTTTCTCAGGATCCACATCAGGACATCAAAGTACTTTTAGCAAGATATGAGTCCAACCCTGAGTCCGAGGCACAGTTGAAATTGCTTTTACCTCAGCTAGTTTCTACATTTGGAGGAAATAAATCAGTCACTGAAATTATTGAGGAGCTAAAAAAACACCAGTCAAGCACTGACCCTAATGTCGTGGAGTGGGCTAATGAAGCTCTCCAAGGCCTCAGAAAAGGTGCTCCTTTTTCCCTTTTCTTGACCAACAAGTACTTCTCTTCGGTTGCCTCTGCAGTGGGGAATAATGACGGTGGACTATCCACGCTTAGTGGCGTAATGGAAACTGAGTATCGTATTGCCTTGAGGTCTTCACTACGGCATGATTTTTCAGAAGGTGTCCGAGCAGTGCTGGTGGACAAGGATCAGAACCCAAAATGGAAACCATCAAGCTTGGAGGAAATTGATCCGAGTGAAGTGGAAGCCGTCTTTAAACCTTTAGGACCGGAAGTTGGGGAGTTGAGAGTGTAA

>Glyma08g04460.2   sequence type=CDS   gene model=Glyma08g04460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTGAGGTCTTCACTGCTGAGTATTCTTTGATATGCAAAATTTCTGATTACAAGAAGCCATATATAAGCTTCATGGATGGAATAACTATGGGTTTTGGAATTGGTTTATCTGGTCATGGCCGCTATCGCATCATAACAGAGAGAACTGTTCTTGCGATGCCAGAAAATGGAATTGGTTTGTTCCCAGATGTAGGTTTTGCTTATATAGCGGCTCAAAGTCCAGGGGAAGGATCCGTTGGTGCTTATCTTGGATTGACTGGAAAGAGGATTTCTACTCCCTCAGATGCAATATATGCTGGCCTTGGAACACATTATGTGCCATCTGGAAAGTTAGGTTCATTCAAGGATGCCCTCTTGGCCACAAACTTTTCTCAGGATCCACATCAGGACATCAAAGTACTTTTAGCAAGATATGAGTCCAACCCTGAGTCCGAGGCACAGTTGAAATTGCTTTTACCTCAGCTAGTTTCTACATTTGGAGGAAATAAATCAGTCACTGAAATTATTGAGGAGCTAAAAAAACACCAGTCAAGCACTGACCCTAATGTCGTGGAGTGGGCTAATGAAGCTCTCCAAGGCCTCAGAAAAGGTGCTCCTTTTTCCCTTTTCTTGACCAACAAGTACTTCTCTTCGGTTGCCTCTGCAGTGGGGAATAATGACGGTGGACTATCCACGCTTAGTGGCGTAATGGAAACTGAGTATCGTATTGCCTTGAGGTCTTCACTACGGCATGATTTTTCAGAAGGTGTCCGAGCAGTGCTGGTGGACAAGGATCAGAACCCAAAATGGAAACCATCAAGCTTGGAGGAAATTGATCCGAGTGAAGTGGAAGCCGTCTTTAAACCTTTAGGACCGGAAGTTGGGGAGTTGAGAGTGTAA

>Glyma08g04460.3   sequence type=CDS   gene model=Glyma08g04460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGGAATAACTATGGGTTTTGGAATTGGTTTATCTGGTCATGGCCGCTATCGCATCATAACAGAGAGAACTGTTCTTGCGATGCCAGAAAATGGAATTGGTTTGTTCCCAGATGTAGGTTTTGCTTATATAGCGGCTCAAAGTCCAGGGGAAGGATCCGTTGGTGCTTATCTTGGATTGACTGGAAAGAGGATTTCTACTCCCTCAGATGCAATATATGCTGGCCTTGGAACACATTATGTGCCATCTGGAAAGTTAGGTTCATTCAAGGATGCCCTCTTGGCCACAAACTTTTCTCAGGATCCACATCAGGACATCAAAGTACTTTTAGCAAGATATGAGTCCAACCCTGAGTCCGAGGCACAGTTGAAATTGCTTTTACCTCAGCTAGTTTCTACATTTGGAGGAAATAAATCAGTCACTGAAATTATTGAGGAGCTAAAAAAACACCAGTCAAGCACTGACCCTAATGTCGTGGAGTGGGCTAATGAAGCTCTCCAAGGCCTCAGAAAAGGTGCTCCTTTTTCCCTTTTCTTGACCAACAAGTACTTCTCTTCGGTTGCCTCTGCAGTGGGGAATAATGACGGTGGACTATCCACGCTTAGTGGCGTAATGGAAACTGAGTATCGTATTGCCTTGAGGTCTTCACTACGGCATGATTTTTCAGAAGGTGTCCGAGCAGTGCTGGTGGACAAGGATCAGAACCCAAAATGGAAACCATCAAGCTTGGAGGAAATTGATCCGAGTGAAGTGGAAGCCGTCTTTAAACCTTTAGGACCGGAAGTTGGGGAGTTGAGAGTGTAA

Predicted protein sequences of Glyma08g04460

Limit To All Plant Sequences

>Glyma08g04460.1   sequence type=predicted peptide   gene model=Glyma08g04460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLLGAVRVQHFLSSLTFSRFQPSFSLRAFSAMAEEFVKGSVHQNGVAVITLDRPKALNAMNLDMDVKYKSYLDEWESDPRVKCVLVDSSSPRAFCAGMDIKGVVAEIQKDKNTPLVQKVFTAEYSLICKISDYKKPYISFMDGITMGFGIGLSGHGRYRIITERTVLAMPENGIGLFPDVGFAYIAAQSPGEGSVGAYLGLTGKRISTPSDAIYAGLGTHYVPSGKLGSFKDALLATNFSQDPHQDIKVLLARYESNPESEAQLKLLLPQLVSTFGGNKSVTEIIEELKKHQSSTDPNVVEWANEALQGLRKGAPFSLFLTNKYFSSVASAVGNNDGGLSTLSGVMETEYRIALRSSLRHDFSEGVRAVLVDKDQNPKWKPSSLEEIDPSEVEAVFKPLGPEVGELRV*

>Glyma08g04460.2   sequence type=predicted peptide   gene model=Glyma08g04460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIEVFTAEYSLICKISDYKKPYISFMDGITMGFGIGLSGHGRYRIITERTVLAMPENGIGLFPDVGFAYIAAQSPGEGSVGAYLGLTGKRISTPSDAIYAGLGTHYVPSGKLGSFKDALLATNFSQDPHQDIKVLLARYESNPESEAQLKLLLPQLVSTFGGNKSVTEIIEELKKHQSSTDPNVVEWANEALQGLRKGAPFSLFLTNKYFSSVASAVGNNDGGLSTLSGVMETEYRIALRSSLRHDFSEGVRAVLVDKDQNPKWKPSSLEEIDPSEVEAVFKPLGPEVGELRV*

>Glyma08g04460.3   sequence type=predicted peptide   gene model=Glyma08g04460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDGITMGFGIGLSGHGRYRIITERTVLAMPENGIGLFPDVGFAYIAAQSPGEGSVGAYLGLTGKRISTPSDAIYAGLGTHYVPSGKLGSFKDALLATNFSQDPHQDIKVLLARYESNPESEAQLKLLLPQLVSTFGGNKSVTEIIEELKKHQSSTDPNVVEWANEALQGLRKGAPFSLFLTNKYFSSVASAVGNNDGGLSTLSGVMETEYRIALRSSLRHDFSEGVRAVLVDKDQNPKWKPSSLEEIDPSEVEAVFKPLGPEVGELRV*

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