Glyma08g04410 - SoyBase

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Report for Sequence Feature Glyma08g04410

Feature Type:	gene_model
Chromosome:	Gm08
Start:	3096918
stop:	3103119
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g04410

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G24460	AT	Annotation by Michelle Graham. TAIR10: Serinc-domain containing serine and sphingolipid biosynthesis protein \| chr3:8886160-8889717 REVERSE LENGTH=409	SoyBase	E_val: 0	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
KOG2592	KOG	Tumor differentially expressed (TDE) protein	JGI		ISS
PTHR10383	Panther	TUMOR DIFFERENTIALLY EXPRESSED PROTEIN-RELATED	JGI		ISS
PTHR10383:SF2	Panther	UNCHARACTERIZED	JGI		ISS
PF03348	PFAM	Serine incorporator (Serinc)	JGI		ISS
UniRef100_G7L8Z3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serine incorporator n=1 Tax=Medicago truncatula RepID=G7L8Z3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002338534	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338534 related cluster n=1 Tax=unknown RepID=UPI0002338534	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g04410

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g04410 not represented in the dataset	Glyma08g04410 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g04410

Paralog	Evidence	Comments
Glyma05g35320	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g04410 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g039500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g04410

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g04410

Limit To All Plant Sequences

>Glyma08g04410.3   sequence type=transcript   gene model=Glyma08g04410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAAATAAAAAAAAGATGAATACCTTGAAAGGAAGACAAAACTGTTGGGGAAGGAAAGAGAAGCTTAACGGCGGGAAATAGAAAAGAAGGAAAAGCAAAGAAAAACCACCAAACCAAAAGCAAACTCTCTCATCATCTTTTAATTTCTATTAAGACCCTAAAGCACGCACTAGAACAAAAAAAGCAAAGCAAGCGCGCATCATTAATCCCTCTCCCTCTCTGTTTTTCTTTTTAAAAGGAGAATGAAACGGAATCTCTACAAGAAACAGTGTTGTGTTGGTTGGTAACTAGATCTTCCTGTCTTATCCATCATTGCTCTGATCTTCATATTCTCCTCTCTCGGAATCTGCTTAATGCATATGCGTGATTGGCGGTTTTGATGTTTGTTAGCCGAGAAAATTAGGCAAAGCTTAGACGCTTACTTCGAGGTAAAGGAAAACGAATCACTCCAGTGCACTCAACTGCTTCAAATAATTTAGCAAAAAGAAAACTCTACCACTGTACAGGGAATGGAATAGAAGATCTTAAGGAAAAGACGCCCATTCATGCTCTGCGTAGCACTGTTGTGTGGAAGAGATGGAAGCAGGGGAAAGCAACAGTGGTAACGAGAGGCGCATTATATCTAAGGATTCTTCATGGTGCAGCCAATTCCGAAATGCATCTAATCCTTGGATGGCAAGATATGCCTATGCCTTGATTTTTCTTGTGGCAAATCTTTTAGCATGGGCTGCACGGGATTATGGTCGTGGTGCTTTAACAGAAATGAAGAGATTTAAAGGATGCAATGGTGGAAAAGATTGTTTGGATGCTGAAGGTGTTTTGCGTGTGAGCTTGGGTTGCTTTATATTTTATATCATAATGTTTTTGTCAACTGCTCGCACTTCTAAACTGAACAATTTGAGAGATACATGGCACTCTGGATGGTGGTCAGTCAAGATTGCTCTCTGGGTGGTCACGACTGCCATTCCATTTCTACTCCCTACTGAATTTATTCAGATTTACGGGGAGGTGGCTCATTTTGGCGCAGGGGTTTTCCTCCTTATTCAATTGATAAGCATAATCAGCTTCATTACATGGCTAAATGAATGTAGTGAGTCAGAAAAATTTGCATCAAGATGCCGAATTCATGTGATGTTTTTCGCAACGACTGCATATGTTGTCTGTCTGATGGGGATCATTTTGATGTACATTTGGTATTCACCAAAGCCATCTTGCCTCCTCAACATTTTCTTCATTACTTGGACGCTAGTACTTCTTCAACTTATGACAAGTGTGTCTCTGCACCCAAAAGTTGATGCTGGCATTCTAACTCCAGGGCTGATGGGGCTTTATGTTGTCTTCCTTTGTTGGTGCGCTATTAGAAGTGAACCTGCTGGAGGAAACTGCATCAGGAAGTCAGACTCTGCAACCAAAACAGACTGGCTAAGCATCATTAGCTTTGTTGTTGCAATACTAGCAATTGTTATTGCGACATTTTCAACAGGCATAGACTCCAAATGCTTTCAGTTCAGGAAGGATGATACAGCACCAGCAGAGGATGATGTACCTTATGGTTATGGCTTCTTCCATTTTGTTTTTGCCACAGGAGCAATGTACTTTGCTATGCTATTGATTGGATGGAATAGTCATCATTCTATGAGAAAATGGACAATTGATGTGGGCTGGACCAGCACCTGGGTCAAAATAGTAAATGAATGGTTGGCAGTTTGTGTATATTTGTGGATGCTGATAGCCCCAATCATATGGAAAAACAGACAAACTGGTTCTACTTAAGAACGCGTCGAAACACAAACCATTCTAGTTTTGATATTTTTTTCAAGGAAAGATCTTCAGATAGTTCCATATCTCAGATGCAGTTAGGAAAAAGAATAGCAATTGAAAAATCAAGGGAATTCTCTGGAAGAAACGGTTCTTCTTCAGTGGACACTAGACAGAAGCAATGGGTCTGCCACAAATGCATATATACTTGTTGGATTTCTATCACCCCCGTAGATATCCGATCCTTTCCCTCCAACCAACCGATCATTTTAAAGAAAAATACACTTTTTACCTGTACATGTGTCAATCAGGGAGCATAATGTATCTAGAATAATTTAATAGATGCTAATTAGATTTTTCATTCATTAATTTTTTAAGTCTCGATGATTGTTTTTTGGTGCTGACACTAATACATACAAGTGGACATGCATTTTTTTTTTGGGGG

>Glyma08g04410.4   sequence type=transcript   gene model=Glyma08g04410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAACTACCAAAATATTGATTGATGATGTTTCCGAAATTAAAGTGTTATCTCCTTTTTTTTGCGTTTTTTTTGTATATGTTTCATTTTTTTAGAGGGCATTGTCATAATTAATGTATTTTTGTTGAGATAATGAAGCCGGTTATGAGTTCTAACTTCACACGGTTGACGCGTTTTTACGTAAACGCATTCCCATCACAGTTATGATATATGCAAGTGCTTGTAAGTGTTTATGGGACAATGAGTACTGTTTGTGTTAGTATTACTTTCAGGGGGGAGGGAGAGAGAGTTATCTGTACGGTGTCCAATATATTATTGAGAGCTAAAGAGATGAGAAATTGTGTACAGGGAATGGAATAGAAGATCTTAAGGAAAAGACGCCCATTCATGCTCTGCGTAGCACTGTTGTGTGGAAGAGATGGAAGCAGGGGAAAGCAACAGTGGTAACGAGAGGCGCATTATATCTAAGGATTCTTCATGGTGCAGCCAATTCCGAAATGCATCTAATCCTTGGATGGCAAGATATGCCTATGCCTTGATTTTTCTTGTGGCAAATCTTTTAGCATGGGCTGCACGGGATTATGGTCGTGGTGCTTTAACAGAAATGAAGAGATTTAAAGGATGCAATGGTGGAAAAGATTGTTTGGATGCTGAAGGTGTTTTGCGTGTGAGCTTGGGTTGCTTTATATTTTATATCATAATGTTTTTGTCAACTGCTCGCACTTCTAAACTGAACAATTTGAGAGATACATGGCACTCTGGATGGTGGTCAGTCAAGATTGCTCTCTGGGTGGTCACGACTGCCATTCCATTTCTACTCCCTACTGAATTTATTCAGATTTACGGGGAGGTGGCTCATTTTGGCGCAGGGGTTTTCCTCCTTATTCAATTGATAAGCATAATCAGCTTCATTACATGGCTAAATGAATGTAGTGAGTCAGAAAAATTTGCATCAAGATGCCGAATTCATGTGATGTTTTTCGCAACGACTGCATATGTTGTCTGTCTGATGGGGATCATTTTGATGTACATTTGGTATTCACCAAAGCCATCTTGCCTCCTCAACATTTTCTTCATTACTTGGACGCTAGTACTTCTTCAACTTATGACAAGTGTGTCTCTGCACCCAAAAGTTGATGCTGGCATTCTAACTCCAGGGCTGATGGGGCTTTATGTTGTCTTCCTTTGTTGGTGCGCTATTAGAAGTGAACCTGCTGGAGGAAACTGCATCAGGAAGTCAGACTCTGCAACCAAAACAGACTGGCTAAGCATCATTAGCTTTGTTGTTGCAATACTAGCAATTGTTATTGCGACATTTTCAACAGGCATAGACTCCAAATGCTTTCAGTTCAGGAAGGATGATACAGCACCAGCAGAGGATGATGTACCTTATGGTTATGGCTTCTTCCATTTTGTTTTTGCCACAGGAGCAATGTACTTTGCTATGCTATTGATTGGATGGAATAGTCATCATTCTATGAGAAAATGGACAATTGATGTGGGCTGGACCAGCACCTGGGTCAAAATAGTAAATGAATGGTTGGCAGTTTGTGTATATTTGTGGATGCTGATAGCCCCAATCATATGGAAAAACAGACAAACTGGTTCTACTTAAGAACGCGTCGAAACACAAACCATTCTAGTTTTGATATTTTTTTCAAGGAAAGATCTTCAGATAGTTCCATATCTCAGATGCAGTTAGGAAAAAGAATAGCAATTGAAAAATCAAGGGAATTCTCTGGAAGAAACGGTTCTTCTTCAGTGGACACTAGACAGAAGCAATGGGTCTGCCACAAATGCATATATACTTGTTGGATTTCTATCACCCCCGTAGATATCCGATCCTTTCCCTCCAACCAACCGATCATTTTAAAGAAAAATACACTTTTTACCTGTACATGTGTCAATCAGGGAGCATAATGTATCTAGAATAATTTAATAGATGCTAATTAGATTTTTCATTCATTAATTTTTTAAGTCTCGATGATTGTTTTTTGGTGCTGACACTAATACATACAAGTGGACATGCATTTTTTTTTTGGGGG

Coding sequences of Glyma08g04410

Limit To All Plant Sequences

>Glyma08g04410.2   sequence type=CDS   gene model=Glyma08g04410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCAGGGGAAAGCAACAGTGGTAACGAGAGGCGCATTATATCTAAGGATTCTTCATGGTGCAGCCAATTCCGAAATGCATCTAATCCTTGGATGGCAAGATATGCCTATGCCTTGATTTTTCTTGTGGCAAATCTTTTAGCATGGGCTGCACGGGATTATGGTCGTGGTGCTTTAACAGAAATGAAGAGATTTAAAGGATGCAATGGTGGAAAAGATTGTTTGGATGCTGAAGGTGTTTTGCGTGTGAGCTTGGGTTGCTTTATATTTTATATCATAATGTTTTTGTCAACTGCTCGCACTTCTAAACTGAACAATTTGAGAGATACATGGCACTCTGGATGGTGGTCAGTCAAGATTGCTCTCTGGGTGGTCACGACTGCCATTCCATTTCTACTCCCTACTGAATTTATTCAGATTTACGGGGAGGTGGCTCATTTTGGCGCAGGGGTTTTCCTCCTTATTCAATTGATAAGCATAATCAGCTTCATTACATGGCTAAATGAATGTAGTGAGTCAGAAAAATTTGCATCAAGATGCCGAATTCATGTGATGTTTTTCGCAACGACTGCATATGTTGTCTGTCTGATGGGGATCATTTTGATGTACATTTGGTATTCACCAAAGCCATCTTGCCTCCTCAACATTTTCTTCATTACTTGGACGCTAGTACTTCTTCAACTTATGACAAGTGTGTCTCTGCACCCAAAAGTTGATGCTGGCATTCTAACTCCAGGGCTGATGGGGCTTTATGTTGTCTTCCTTTGTTGGTGCGCTATTAGAAGTGAACCTGCTGGAGGAAACTGCATCAGGAAGTCAGACTCTGCAACCAAAACAGACTGGCTAAGCATCATTAGCTTTGTTGTTGCAATACTAGCAATTGTTATTGCGACATTTTCAACAGGCATAGACTCCAAATGCTTTCAGTTCAGGAAGGATGATACAGCACCAGCAGAGGATGATGTACCTTATGGTTATGGCTTCTTCCATTTTGTTTTTGCCACAGGAGCAATGTACTTTGCTATGCTATTGATTGGATGGAATAGTCATCATTCTATGAGAAAATGGACAATTGATGTGGGCTGGACCAGCACCTGGGTCAAAATAGTAAATGAATGGTTGGCAGTTTGTGTATATTTGTGGATGCTGATAGCCCCAATCATATGGAAAAACAGACAAACTGGTTCTACTTAA

>Glyma08g04410.3   sequence type=CDS   gene model=Glyma08g04410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCAGGGGAAAGCAACAGTGGTAACGAGAGGCGCATTATATCTAAGGATTCTTCATGGTGCAGCCAATTCCGAAATGCATCTAATCCTTGGATGGCAAGATATGCCTATGCCTTGATTTTTCTTGTGGCAAATCTTTTAGCATGGGCTGCACGGGATTATGGTCGTGGTGCTTTAACAGAAATGAAGAGATTTAAAGGATGCAATGGTGGAAAAGATTGTTTGGATGCTGAAGGTGTTTTGCGTGTGAGCTTGGGTTGCTTTATATTTTATATCATAATGTTTTTGTCAACTGCTCGCACTTCTAAACTGAACAATTTGAGAGATACATGGCACTCTGGATGGTGGTCAGTCAAGATTGCTCTCTGGGTGGTCACGACTGCCATTCCATTTCTACTCCCTACTGAATTTATTCAGATTTACGGGGAGGTGGCTCATTTTGGCGCAGGGGTTTTCCTCCTTATTCAATTGATAAGCATAATCAGCTTCATTACATGGCTAAATGAATGTAGTGAGTCAGAAAAATTTGCATCAAGATGCCGAATTCATGTGATGTTTTTCGCAACGACTGCATATGTTGTCTGTCTGATGGGGATCATTTTGATGTACATTTGGTATTCACCAAAGCCATCTTGCCTCCTCAACATTTTCTTCATTACTTGGACGCTAGTACTTCTTCAACTTATGACAAGTGTGTCTCTGCACCCAAAAGTTGATGCTGGCATTCTAACTCCAGGGCTGATGGGGCTTTATGTTGTCTTCCTTTGTTGGTGCGCTATTAGAAGTGAACCTGCTGGAGGAAACTGCATCAGGAAGTCAGACTCTGCAACCAAAACAGACTGGCTAAGCATCATTAGCTTTGTTGTTGCAATACTAGCAATTGTTATTGCGACATTTTCAACAGGCATAGACTCCAAATGCTTTCAGTTCAGGAAGGATGATACAGCACCAGCAGAGGATGATGTACCTTATGGTTATGGCTTCTTCCATTTTGTTTTTGCCACAGGAGCAATGTACTTTGCTATGCTATTGATTGGATGGAATAGTCATCATTCTATGAGAAAATGGACAATTGATGTGGGCTGGACCAGCACCTGGGTCAAAATAGTAAATGAATGGTTGGCAGTTTGTGTATATTTGTGGATGCTGATAGCCCCAATCATATGGAAAAACAGACAAACTGGTTCTACTTAA

>Glyma08g04410.4   sequence type=CDS   gene model=Glyma08g04410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCAGGGGAAAGCAACAGTGGTAACGAGAGGCGCATTATATCTAAGGATTCTTCATGGTGCAGCCAATTCCGAAATGCATCTAATCCTTGGATGGCAAGATATGCCTATGCCTTGATTTTTCTTGTGGCAAATCTTTTAGCATGGGCTGCACGGGATTATGGTCGTGGTGCTTTAACAGAAATGAAGAGATTTAAAGGATGCAATGGTGGAAAAGATTGTTTGGATGCTGAAGGTGTTTTGCGTGTGAGCTTGGGTTGCTTTATATTTTATATCATAATGTTTTTGTCAACTGCTCGCACTTCTAAACTGAACAATTTGAGAGATACATGGCACTCTGGATGGTGGTCAGTCAAGATTGCTCTCTGGGTGGTCACGACTGCCATTCCATTTCTACTCCCTACTGAATTTATTCAGATTTACGGGGAGGTGGCTCATTTTGGCGCAGGGGTTTTCCTCCTTATTCAATTGATAAGCATAATCAGCTTCATTACATGGCTAAATGAATGTAGTGAGTCAGAAAAATTTGCATCAAGATGCCGAATTCATGTGATGTTTTTCGCAACGACTGCATATGTTGTCTGTCTGATGGGGATCATTTTGATGTACATTTGGTATTCACCAAAGCCATCTTGCCTCCTCAACATTTTCTTCATTACTTGGACGCTAGTACTTCTTCAACTTATGACAAGTGTGTCTCTGCACCCAAAAGTTGATGCTGGCATTCTAACTCCAGGGCTGATGGGGCTTTATGTTGTCTTCCTTTGTTGGTGCGCTATTAGAAGTGAACCTGCTGGAGGAAACTGCATCAGGAAGTCAGACTCTGCAACCAAAACAGACTGGCTAAGCATCATTAGCTTTGTTGTTGCAATACTAGCAATTGTTATTGCGACATTTTCAACAGGCATAGACTCCAAATGCTTTCAGTTCAGGAAGGATGATACAGCACCAGCAGAGGATGATGTACCTTATGGTTATGGCTTCTTCCATTTTGTTTTTGCCACAGGAGCAATGTACTTTGCTATGCTATTGATTGGATGGAATAGTCATCATTCTATGAGAAAATGGACAATTGATGTGGGCTGGACCAGCACCTGGGTCAAAATAGTAAATGAATGGTTGGCAGTTTGTGTATATTTGTGGATGCTGATAGCCCCAATCATATGGAAAAACAGACAAACTGGTTCTACTTAA

Predicted protein sequences of Glyma08g04410

Limit To All Plant Sequences

>Glyma08g04410.2   sequence type=predicted peptide   gene model=Glyma08g04410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAGESNSGNERRIISKDSSWCSQFRNASNPWMARYAYALIFLVANLLAWAARDYGRGALTEMKRFKGCNGGKDCLDAEGVLRVSLGCFIFYIIMFLSTARTSKLNNLRDTWHSGWWSVKIALWVVTTAIPFLLPTEFIQIYGEVAHFGAGVFLLIQLISIISFITWLNECSESEKFASRCRIHVMFFATTAYVVCLMGIILMYIWYSPKPSCLLNIFFITWTLVLLQLMTSVSLHPKVDAGILTPGLMGLYVVFLCWCAIRSEPAGGNCIRKSDSATKTDWLSIISFVVAILAIVIATFSTGIDSKCFQFRKDDTAPAEDDVPYGYGFFHFVFATGAMYFAMLLIGWNSHHSMRKWTIDVGWTSTWVKIVNEWLAVCVYLWMLIAPIIWKNRQTGST*

>Glyma08g04410.3   sequence type=predicted peptide   gene model=Glyma08g04410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAGESNSGNERRIISKDSSWCSQFRNASNPWMARYAYALIFLVANLLAWAARDYGRGALTEMKRFKGCNGGKDCLDAEGVLRVSLGCFIFYIIMFLSTARTSKLNNLRDTWHSGWWSVKIALWVVTTAIPFLLPTEFIQIYGEVAHFGAGVFLLIQLISIISFITWLNECSESEKFASRCRIHVMFFATTAYVVCLMGIILMYIWYSPKPSCLLNIFFITWTLVLLQLMTSVSLHPKVDAGILTPGLMGLYVVFLCWCAIRSEPAGGNCIRKSDSATKTDWLSIISFVVAILAIVIATFSTGIDSKCFQFRKDDTAPAEDDVPYGYGFFHFVFATGAMYFAMLLIGWNSHHSMRKWTIDVGWTSTWVKIVNEWLAVCVYLWMLIAPIIWKNRQTGST*

>Glyma08g04410.4   sequence type=predicted peptide   gene model=Glyma08g04410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAGESNSGNERRIISKDSSWCSQFRNASNPWMARYAYALIFLVANLLAWAARDYGRGALTEMKRFKGCNGGKDCLDAEGVLRVSLGCFIFYIIMFLSTARTSKLNNLRDTWHSGWWSVKIALWVVTTAIPFLLPTEFIQIYGEVAHFGAGVFLLIQLISIISFITWLNECSESEKFASRCRIHVMFFATTAYVVCLMGIILMYIWYSPKPSCLLNIFFITWTLVLLQLMTSVSLHPKVDAGILTPGLMGLYVVFLCWCAIRSEPAGGNCIRKSDSATKTDWLSIISFVVAILAIVIATFSTGIDSKCFQFRKDDTAPAEDDVPYGYGFFHFVFATGAMYFAMLLIGWNSHHSMRKWTIDVGWTSTWVKIVNEWLAVCVYLWMLIAPIIWKNRQTGST*

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