SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G24480 | AT | Annotation by Michelle Graham. TAIR10: Leucine-rich repeat (LRR) family protein | chr3:8901154-8902638 REVERSE LENGTH=494 | SoyBase | E_val: 0 | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
| GO:0009505 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0005199 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: structural constituent of cell wall | SoyBase | N/A | ISS |
| PTHR24420 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24420:SF665 | Panther | JGI | ISS | ||
| PF08263 | PFAM | Leucine rich repeat N-terminal domain | JGI | ISS | |
| UniRef100_Q9LHF1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Leucine-rich repeat extensin-like protein 4 n=1 Tax=Arabidopsis thaliana RepID=LRX4_ARATH | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002338888 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002338888 related cluster n=1 Tax=unknown RepID=UPI0002338888 | SoyBase | E_val: 0 | ISS |
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Glyma08g04390 not represented in the dataset |
Glyma08g04390 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g35330 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g039400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g04390.1 sequence type=CDS gene model=Glyma08g04390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGATGATGATGAAGAAGAAGGACGCAGCATACTCCTCCATTCTCACACTACTCCTCATTGCCACACTACTCTCCCTAACCGTGTCTGCCTCTTCACTCTCCGACGCCGAAGCAATGTACGTCAAACAACGCCAGCTTCTCTACTACCGAGACGAGTTCGGCGACCGAGGTGAGAATGTCATCGTTGACCCTTCTCTTGCTTTCGAAAATGACCGTCTCAGAAACGCTTATATAGCCTTGCAAGCTTGGAAGCAAGCCATTTTGTCTGATCCCCGTAACCAGACAGCCGATTGGGTTGGATCCGATGTGTGCAGTTACACCGGAGTTTACTGTGCTCCCGCTCTGGACATCCCCAAGATCCGTACCGTTGCCGGCATTGATCTCAATCATTGCGACATTGCCGGTTATTTACCCGAAGAGCTTGGCTTGCTTCTGGATCTTGCACTCTTCCACGTCAACTCCAATAGATTCTGCGGCACCGTGCCGCACAAGTTCGAGAGGTTGAAACTGCTCTACGAACTGGATCTCAGTAACAACAGATTCGCAGGGAACTTCCCTGAGGTAGTTCTGCGTCTTCCATCACTCAAGTTCCTGGATCTCAGGTTCAACGAATTCGAAGGAACGGTGCCGAGAGAGTTGTTCGATAAGGATCTGGACGCCATTTTCATCAACGACAACCGTTTCGTATTTGATCTTCCGGACAACTTCGGCAACTCGCCGGTCTCCGTCATCGTCCTCGCCAACAACAGGTTCCACGGCTGCATTCCGGCGAGCTTGGGGAACATGTCCAACTTGAACGAGATCATTTTGATGAACAACGCATTCCGATCGTGCTTGCCTTCGGAGATTGGGCTTTTGAAGAACCTGACGGTGTTCGACGTCAGCTTTAATCAGCTTCTTGGTCCCATACCGAACGCAGTTGGAAACGCCGTTAGCTTGGAGCAGCTCAATGTGGCGCATAACTTGCTCTCTGGTCAAATTCCAGCTAGCATTTGTATGTTGCCTCACCTTCAGAACTTCACTTATTCCTTTAACTTCTTCACCGGTGAGCCTCCCGCATGTCTCGCATTGCCGGCGTTTGATGACAGGGTAAACTGCTTACCGGCGAGGCCTCTGCAGAGGCCTCCGGCGCAATGTAAGTCGTTCTTGTCTAAACCTGTGGACTGTAACTCCTTTAAGTGTAAACATTTTGTTCCTTCACCTCCATCACCTTCACCATTTCCTTCACCTACAGCACCGGTAACACCTTCTCCATCACCTTCTACGCCTTCACCATTTCCTTCACCTACAACACCGGTAACACCACCTTCACCCTCACATTCCCCTCCATCACCTTCTACGCCTTCACCTACAACACCGGTTACACCTTCTCCCTCACATTCACCTCCATCACCTGCTACACCTTCACCATTTCCTTCACCTACAACACCGGTAACACCTTCACCCTCACATTCCCCTCCATCACCTGCTACACCTTCACCATTTCCTTCACCTACAACACCGGTAACACCTTCACCCTCACATTCCCCTCCGTCACCTGCTACACCTACAACACCGGTAACACCTTCACCTTCACATTCCCCTCCGTCACCTGCTACACCTTCACCATTTCCTTCACCTACAACACCGGTAACACCTTCACCTTCACATTCCCCTCCGTCACCTGCTACACCTTCACCATTTCCTTCACCTACAACTCCTGTAACACCTTCACCTCCATCGCCTTCTACTCCTTCACCCTTTCCTTCACCTACGACACCTGTGACACCTTCACCTGTTCATAGTCCTCCTTCTCCAGTGTATTTGCCACCGCCACATTCTTCCCCTACACCACCTGCTCATAATTACGGCTCTCCGCCACCCCATCACTCACCCGCTCAACCTGTTTATCCTTATTTATCACCGCCACCTCCTCCCTCTGTCCATTCTTCACCTCCACCACCACCACCACCACCTTGTATAGAACTTCCTCCACCCCCTCCCCAATCTACACCTTCTCCCACACCTTACCTGCCACCACCATCCCCATCTCCTCCCCCGCCACCGCCACCGGTATACCATTCTCCACCGCCGGCATCACCGCCTCCGTGCGAAACTCCACCTTCAGTTTCTCCGCCTCCACCACCTGCCCCAGTATACGAAGGGCCATTACCACCTATCGTTGGACTCCCATACGCGTCGCCTCCACCACCACCCTTTTATTGA
>Glyma08g04390.1 sequence type=predicted peptide gene model=Glyma08g04390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMMMMKKKDAAYSSILTLLLIATLLSLTVSASSLSDAEAMYVKQRQLLYYRDEFGDRGENVIVDPSLAFENDRLRNAYIALQAWKQAILSDPRNQTADWVGSDVCSYTGVYCAPALDIPKIRTVAGIDLNHCDIAGYLPEELGLLLDLALFHVNSNRFCGTVPHKFERLKLLYELDLSNNRFAGNFPEVVLRLPSLKFLDLRFNEFEGTVPRELFDKDLDAIFINDNRFVFDLPDNFGNSPVSVIVLANNRFHGCIPASLGNMSNLNEIILMNNAFRSCLPSEIGLLKNLTVFDVSFNQLLGPIPNAVGNAVSLEQLNVAHNLLSGQIPASICMLPHLQNFTYSFNFFTGEPPACLALPAFDDRVNCLPARPLQRPPAQCKSFLSKPVDCNSFKCKHFVPSPPSPSPFPSPTAPVTPSPSPSTPSPFPSPTTPVTPPSPSHSPPSPSTPSPTTPVTPSPSHSPPSPATPSPFPSPTTPVTPSPSHSPPSPATPSPFPSPTTPVTPSPSHSPPSPATPTTPVTPSPSHSPPSPATPSPFPSPTTPVTPSPSHSPPSPATPSPFPSPTTPVTPSPPSPSTPSPFPSPTTPVTPSPVHSPPSPVYLPPPHSSPTPPAHNYGSPPPHHSPAQPVYPYLSPPPPPSVHSSPPPPPPPPCIELPPPPPQSTPSPTPYLPPPSPSPPPPPPPVYHSPPPASPPPCETPPSVSPPPPPAPVYEGPLPPIVGLPYASPPPPPFY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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